ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16k11 |
|---|---|
| Clone Library Name | barley_pub |
>PAHX_HUMAN (O14832) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 338 Score = 53.5 bits (127), Expect = 4e-07 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 7/128 (5%) Frame = +1 Query: 142 IQSMYIFKQPGIGGEVVPHQDNTFLYTEPLSCTGL----WLALEDATTTNGCLWAIPGSH 309 + +M I K P G + H + L+ P + L W A+E + NGCL +PG+H Sbjct: 154 MHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTH 213 Query: 310 KNGLK-RRMIRDENGTH--FDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPV 480 K LK + E G + F + K V L M+ GD V H L+H S +N + Sbjct: 214 KGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQG 273 Query: 481 SRHALSLH 504 R A+S H Sbjct: 274 FRKAISCH 281
>PAHX_CAEEL (O62515) Probable phytanoyl-CoA dioxygenase (EC 1.14.11.18)| (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 312 Score = 51.2 bits (121), Expect = 2e-06 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Frame = +1 Query: 196 HQDNTFLYTEP---LSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDR 366 HQD + P + C W A+E T NGCL +PG+HK L G Sbjct: 142 HQDLQYFPFRPADFICCA--WTAMEKITRANGCLVVVPGTHKGVLLPHEYPKWEGGVNKA 199 Query: 367 PSPLYDQKEFVP---LEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVDMEGCKWSK 537 + D P +EM+ GD V H L+H S N + R A+S H + + C++ Sbjct: 200 YHGIQDYDTSTPRIHVEMEPGDTVFFHPILIHGSGANRTEGFRKAISCHYANDDLCRYVN 259 Query: 538 DNWIQRKTAPEPL 576 ++T E + Sbjct: 260 VEGTTQETLAEEI 272
>PAHX_RAT (P57093) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 338 Score = 50.4 bits (119), Expect = 4e-06 Identities = 54/201 (26%), Positives = 85/201 (42%), Gaps = 24/201 (11%) Frame = +1 Query: 1 GLRQPKELSINKVGHA-----------LHEHDPVFKKFAFSENISSLFSSLGYKRPAVIQ 147 G+ K+++I K G+A +++ +F+ A + + + G A+ Sbjct: 97 GMTVMKDVAIAKQGYAPSERVVTKIQDFQQNEELFRYCALPQIVKYVECFTGPNIMAM-H 155 Query: 148 SMYIFKQPGIGGEVVPHQDNTFLYTEPLSCTGL----WLALEDATTTNGCLWAIPGSHKN 315 +M I K P G + H + L+ P + L W A+E NGCL +PG+HK Sbjct: 156 TMLINKPPDSGKKTSRHPLHQDLHFFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTHKG 215 Query: 316 GLK-RRMIRDENGTH--------FDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSFEN 468 LK + E G + +D SP V L M+ GD V H L+H S N Sbjct: 216 PLKPHDYPKWEGGVNKMYHGIQDYDPDSPR------VHLVMEKGDTVFFHPLLIHGSGRN 269 Query: 469 LSPVSRHALSLHVVDMEGCKW 531 + R A+S H + CK+ Sbjct: 270 RTQGFRKAISCHYGSSD-CKY 289
>PAHX_MOUSE (O35386) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) (Lupus nephritis-associated peptide 1) Length = 338 Score = 50.4 bits (119), Expect = 4e-06 Identities = 42/134 (31%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Frame = +1 Query: 142 IQSMYIFKQPGIGGEVVPHQDNTFLYTEPLSCTGL----WLALEDATTTNGCLWAIPGSH 309 + M I K P +G + H + L+ P + L W A+E NGCL +PG+H Sbjct: 154 LHGMLINKPPDVGKKTSRHPLHQDLHYFPFRPSNLIVCAWTAMEHIDRNNGCLVVLPGTH 213 Query: 310 KNGLK-RRMIRDENGTH--------FDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSF 462 K LK + E G + +D SP V L M+ GD V H L+H S Sbjct: 214 KGTLKPHDYPKWEGGVNKMYHGIQDYDPNSPR------VHLVMEKGDTVFFHPLLIHGSG 267 Query: 463 ENLSPVSRHALSLH 504 N + R A+S H Sbjct: 268 RNKTQGFRKAISCH 281
>PAHX_BOVIN (O18778) Phytanoyl-CoA dioxygenase, peroxisomal precursor (EC| 1.14.11.18) (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid oxidase) Length = 337 Score = 47.8 bits (112), Expect = 2e-05 Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 4/110 (3%) Frame = +1 Query: 196 HQD-NTFLYTEPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRD-ENGTH--FD 363 HQD + F + S W A+E NGCL +PG+HK L+ E G + F Sbjct: 175 HQDLHYFPFRPSNSIVCAWTAMEHIDRNNGCLVVLPGTHKGPLQPHDYPQWEGGVNIMFH 234 Query: 364 RPSPLYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVD 513 V L M+ GD V H L+H S N S R A+S H D Sbjct: 235 GIQDYDKNNARVHLVMEKGDTVFFHPLLIHGSGRNKSQGFRKAISCHFAD 284
>Y3657_MYCBO (P67773) Hypothetical protein Mb3657| Length = 291 Score = 45.8 bits (107), Expect = 9e-05 Identities = 30/94 (31%), Positives = 48/94 (51%) Frame = +1 Query: 223 EPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVP 402 +PL C L +AL D T NG +PGSH+ +RPSP Y + + P Sbjct: 141 QPLLCNAL-IALCDFTADNGATQVVPGSHRWP--------------ERPSPPYPEGK--P 183 Query: 403 LEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLH 504 +E+ +GD ++ +G L H + N + R AL+++ Sbjct: 184 VEINAGDALIWNGSLWHTAAANRTDAPRPALTIN 217
>Y3633_MYCTU (P67772) Hypothetical protein Rv3633/MT3735| Length = 291 Score = 45.8 bits (107), Expect = 9e-05 Identities = 30/94 (31%), Positives = 48/94 (51%) Frame = +1 Query: 223 EPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVP 402 +PL C L +AL D T NG +PGSH+ +RPSP Y + + P Sbjct: 141 QPLLCNAL-IALCDFTADNGATQVVPGSHRWP--------------ERPSPPYPEGK--P 183 Query: 403 LEMKSGDFVVIHGDLVHQSFENLSPVSRHALSLH 504 +E+ +GD ++ +G L H + N + R AL+++ Sbjct: 184 VEINAGDALIWNGSLWHTAAANRTDAPRPALTIN 217
>Y1539_MYCBO (P67771) Hypothetical protein Mb1539| Length = 273 Score = 33.9 bits (76), Expect = 0.37 Identities = 22/101 (21%), Positives = 40/101 (39%) Frame = +1 Query: 196 HQDNTFLYTEPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSP 375 HQD + + ++ + A++ T G +PGSH+ ++P Sbjct: 126 HQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQ--------------RIEKPDH 171 Query: 376 LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALS 498 Y + VP++ +G V L H + N S R A++ Sbjct: 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAIN 212
>Y1501_MYCTU (P67770) Hypothetical protein Rv1501/MT1550| Length = 273 Score = 33.9 bits (76), Expect = 0.37 Identities = 22/101 (21%), Positives = 40/101 (39%) Frame = +1 Query: 196 HQDNTFLYTEPLSCTGLWLALEDATTTNGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSP 375 HQD + + ++ + A++ T G +PGSH+ ++P Sbjct: 126 HQDFPRVLSGYIASVNIMFAIDPFTRDTGATLVVPGSHQ--------------RIEKPDH 171 Query: 376 LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSRHALS 498 Y + VP++ +G V L H + N S R A++ Sbjct: 172 TYLARNAVPVQCAAGSLFVFDSTLWHAAGRNTSGKDRLAIN 212
>CC45L_HUMAN (O75419) CDC45-related protein (PORC-PI-1) (Cdc45)| Length = 566 Score = 32.3 bits (72), Expect = 1.1 Identities = 16/34 (47%), Positives = 23/34 (67%) Frame = +2 Query: 65 LCSKSLLSRRIFLACSLL*GTRDLQLFNLCTSLS 166 LC+ ++S+ FL CSL+ GT D+ LF+ SLS Sbjct: 434 LCTNLVISQGPFLYCSLMEGTPDVMLFSRPASLS 467
>ECTD_BORBR (Q7WHJ0) Ectoine hydroxylase (EC 1.17.-.-)| Length = 308 Score = 31.6 bits (70), Expect = 1.8 Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 16/102 (15%) Frame = +1 Query: 229 LSCTGLWLALEDATTTNGCLWAIPGSHKNGL-----------KRRMIRDENGTHFDRPSP 375 LSC+ L L D TNG L +PGSH+ + K+ + + E G P P Sbjct: 166 LSCSVL---LTDNNETNGPLMLVPGSHRQFISCVGETPRDHYKQSLKKQEYGV----PDP 218 Query: 376 -----LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSR 486 L +Q + K+G V + +H S N+SP R Sbjct: 219 VSLQLLAEQGGISTMTGKAGSVVFFDCNTMHGSNSNISPWPR 260
>NQO3_THET8 (Q56223) NADH-quinone oxidoreductase subunit 3 (EC 1.6.99.5) (NADH| dehydrogenase I chain 3) (NDH-1 subunit 3) Length = 783 Score = 31.2 bits (69), Expect = 2.4 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 8/83 (9%) Frame = +1 Query: 298 PGSHKNGLKRR-MIRDENGTHFDRPSPLYDQKEFVPLE--MKSGDFVVIHGDLVHQSFEN 468 P ++ GL+ ++ G +D P LY FVP E +K FVV+H +H E Sbjct: 537 PAANARGLEAMGVLPGAKGASWDEPGALYAYYGFVPPEEALKGKRFVVMHLSHLHPLAER 596 Query: 469 LSPVSRHALSL-----HVVDMEG 522 + V A + H+V++EG Sbjct: 597 YAHVVLPAPTFYEKRGHLVNLEG 619
>GLGB_SYNPX (Q7U646) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen| branching enzyme) (BE) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase) Length = 775 Score = 30.8 bits (68), Expect = 3.1 Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 2/101 (1%) Frame = +1 Query: 280 GCLWA--IPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMKSGDFVVIHGDLVH 453 G +W IPG + L + IR ++G + + P Q E P Sbjct: 172 GGIWELFIPGLAEGSLYKYEIRTQDGHCYQKADPYGFQHEVRP----------------- 214 Query: 454 QSFENLSPVSRHALSLHVVDMEGCKWSKDNWIQRKTAPEPL 576 +N S V+R ++G +WS +W+QR+ + PL Sbjct: 215 ---DNSSVVAR---------LDGFQWSDGSWMQRRDSSNPL 243
>SYV_HELHP (Q7VHN2) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 899 Score = 30.8 bits (68), Expect = 3.1 Identities = 15/56 (26%), Positives = 27/56 (48%) Frame = -3 Query: 369 GTIKMSAIFIPDHSPFQTIFM*SGNCP*ATIGCCCIFKRKPQSCAGQRLCIKKCII 202 G+ + IF+ ++PF+ + C A + CI ++KP+ C G +C I Sbjct: 770 GSTNIECIFVKLNAPFEHSLLEQFVCKLAKVKTLCITQQKPKDCVGDVSKYCECYI 825
>CC45L_MOUSE (Q9Z1X9) CDC45-related protein (PORC-PI-1)| Length = 566 Score = 30.8 bits (68), Expect = 3.1 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = +2 Query: 65 LCSKSLLSRRIFLACSLL*GTRDLQLFNLCTSLS 166 LC+ + S+ FL CSL+ GT D+ LF+ SLS Sbjct: 434 LCTNLVTSQGPFLYCSLMEGTPDVTLFSKPASLS 467
>OTUD3_HUMAN (Q5T2D3) OTU domain-containing protein 3| Length = 398 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +1 Query: 277 NGCLWAIPGSHKNGLKRRMIRDENGTHFDRPSPLYDQKEFVPLEMKSGDFVVIHGD 444 N LW I G+ K+ ++ I G H+D + D E P +++ DF ++H D Sbjct: 156 NAPLWQIRGTEKSSVRELHIAYRYGEHYDSVRRINDNSE-APAHLQT-DFQMLHQD 209
>MRE11_METTH (O26641) DNA double-strand break repair protein mre11| Length = 587 Score = 30.4 bits (67), Expect = 4.0 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = +1 Query: 412 KSGDFVVIHGDLVHQSFENLSPVSRHALSLHVVDMEG 522 K DF++I GDL H + N+ V R L L V G Sbjct: 207 KDVDFMIIAGDLFHSNIPNMETVKRATLELRRVREAG 243
>MQO1_PSEAE (Q9HYF4) Probable malate:quinone oxidoreductase 1 (EC 1.1.99.16)| (Malate dehydrogenase [acceptor] 1) (MQO 1) Length = 523 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/43 (32%), Positives = 20/43 (46%) Frame = +1 Query: 190 VPHQDNTFLYTEPLSCTGLWLALEDATTTNGCLWAIPGSHKNG 318 VPH D + +P+ G + NG LW +PGS +G Sbjct: 321 VPHLDTRMIDGKPVLLFGPFATFSTKFLKNGSLWDLPGSVTSG 363
>ECTD_BORPA (Q7W977) Ectoine hydroxylase (EC 1.17.-.-)| Length = 308 Score = 29.6 bits (65), Expect = 6.9 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 16/102 (15%) Frame = +1 Query: 229 LSCTGLWLALEDATTTNGCLWAIPGSHKNGL-----------KRRMIRDENGTHFDRPSP 375 LSC+ L L D NG L +PGSH+ + K+ + + E G P P Sbjct: 166 LSCSVL---LTDNNEANGPLMLVPGSHRQFISCVGETPRDHYKQSLKKQEYGV----PDP 218 Query: 376 -----LYDQKEFVPLEMKSGDFVVIHGDLVHQSFENLSPVSR 486 L +Q + K+G V + +H S N+SP R Sbjct: 219 VSLQLLAEQGGISTMTGKAGSVVFFDCNTMHGSNSNISPWPR 260 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,904,782 Number of Sequences: 219361 Number of extensions: 2016575 Number of successful extensions: 4961 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 4823 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4953 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
