ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16k06 |
|---|---|
| Clone Library Name | barley_pub |
>RS6B_ARATH (P51430) 40S ribosomal protein S6-2| Length = 249 Score = 89.0 bits (219), Expect = 8e-18 Identities = 47/70 (67%), Positives = 52/70 (74%) Frame = +1 Query: 1 GKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSE 180 GKKVSKAPKIQRLVTPLTLQ S+AA+YQKLLA RLKEQRDRRSE Sbjct: 171 GKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQRDRRSE 230 Query: 181 SMAKRRSKLS 210 S+AK+RS+LS Sbjct: 231 SLAKKRSRLS 240
>RS6A_ARATH (O48549) 40S ribosomal protein S6-1| Length = 250 Score = 87.4 bits (215), Expect = 2e-17 Identities = 46/70 (65%), Positives = 52/70 (74%) Frame = +1 Query: 1 GKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSE 180 GK+VSKAPKIQRLVTPLTLQ S+AA+YQKLLA RLKEQRDRRSE Sbjct: 171 GKEVSKAPKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSE 230 Query: 181 SMAKRRSKLS 210 S+AK+RS+LS Sbjct: 231 SLAKKRSRLS 240
>RS6_ASPOF (Q9M3V8) 40S ribosomal protein S6| Length = 251 Score = 87.0 bits (214), Expect = 3e-17 Identities = 47/70 (67%), Positives = 50/70 (71%) Frame = +1 Query: 1 GKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSE 180 GK SKAPKIQRLVTPLTLQ SEAAEYQKLLA RLKEQRDRRSE Sbjct: 171 GKTCSKAPKIQRLVTPLTLQRKRARIAEKKKRVAKAKSEAAEYQKLLASRLKEQRDRRSE 230 Query: 181 SMAKRRSKLS 210 S+AK+RS+LS Sbjct: 231 SLAKKRSRLS 240
>RS6_TOBAC (P29345) 40S ribosomal protein S6 (Fragment)| Length = 199 Score = 81.6 bits (200), Expect = 1e-15 Identities = 44/68 (64%), Positives = 49/68 (72%) Frame = +1 Query: 7 KVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSESM 186 K SKAPKIQRLVTPLTLQ SEAAEYQKLLA RLKEQR++RSES+ Sbjct: 123 KGSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQREKRSESL 182 Query: 187 AKRRSKLS 210 AK+RS+LS Sbjct: 183 AKKRSRLS 190
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 60.8 bits (146), Expect = 2e-09 Identities = 35/67 (52%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +1 Query: 1 GKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRS 177 GKK +KAPKIQRLVTP LQ EAAEY KLLA+RLKE +++R Sbjct: 166 GKKPRTKAPKIQRLVTPRVLQHKRRRIALKRQRTQKNKDEAAEYAKLLAKRLKEAKEKRQ 225 Query: 178 ESMAKRR 198 E +AKRR Sbjct: 226 EKIAKRR 232
>RS6_RAT (P62755) 40S ribosomal protein S6| Length = 249 Score = 60.1 bits (144), Expect = 4e-09 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +1 Query: 1 GKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRS 177 GKK +KAPKIQRLVTP LQ EAAEY KLLA+R+KE +++R Sbjct: 166 GKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQ 225 Query: 178 ESMAKRR 198 E +AKRR Sbjct: 226 EQIAKRR 232
>RS6_MOUSE (P62754) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 60.1 bits (144), Expect = 4e-09 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +1 Query: 1 GKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRS 177 GKK +KAPKIQRLVTP LQ EAAEY KLLA+R+KE +++R Sbjct: 166 GKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQ 225 Query: 178 ESMAKRR 198 E +AKRR Sbjct: 226 EQIAKRR 232
>RS6_HUMAN (P62753) 40S ribosomal protein S6 (Phosphoprotein NP33)| Length = 249 Score = 60.1 bits (144), Expect = 4e-09 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +1 Query: 1 GKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRS 177 GKK +KAPKIQRLVTP LQ EAAEY KLLA+R+KE +++R Sbjct: 166 GKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQ 225 Query: 178 ESMAKRR 198 E +AKRR Sbjct: 226 EQIAKRR 232
>RS6_CHICK (P47838) 40S ribosomal protein S6| Length = 249 Score = 58.9 bits (141), Expect = 8e-09 Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +1 Query: 1 GKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRS 177 GKK +KAPKIQRLVTP LQ EAA+Y KLLA+R+KE +++R Sbjct: 166 GKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEAADYAKLLAKRMKEAKEKRQ 225 Query: 178 ESMAKRR 198 E +AKRR Sbjct: 226 EQIAKRR 232
>RS6_ONCMY (Q9YGF2) 40S ribosomal protein S6| Length = 249 Score = 57.8 bits (138), Expect = 2e-08 Identities = 32/67 (47%), Positives = 41/67 (61%), Gaps = 1/67 (1%) Frame = +1 Query: 1 GKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRS 177 GKK +KAP+IQRLVTP LQ EA+EY KLLA+R+KE +++R Sbjct: 166 GKKPRTKAPRIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRMKEAKEKRQ 225 Query: 178 ESMAKRR 198 E +AKRR Sbjct: 226 EQIAKRR 232
>RS6_XENLA (P39017) 40S ribosomal protein S6| Length = 249 Score = 57.4 bits (137), Expect = 2e-08 Identities = 33/67 (49%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Frame = +1 Query: 1 GKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRS 177 GKK +KAPKIQRLVTP LQ EA+EY KLLA+R KE +++R Sbjct: 166 GKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTQKNKEEASEYAKLLAKRSKEAKEKRQ 225 Query: 178 ESMAKRR 198 E +AKRR Sbjct: 226 EQIAKRR 232
>RS6_DEBHA (Q6BXH8) 40S ribosomal protein S6| Length = 236 Score = 56.2 bits (134), Expect = 5e-08 Identities = 32/68 (47%), Positives = 38/68 (55%) Frame = +1 Query: 4 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 183 KK +KAPKIQRLVTP TLQ AAEY +LLAQRL E++ R+E Sbjct: 167 KKYTKAPKIQRLVTPQTLQRKRALKAQKVKNAQQQRDAAAEYAQLLAQRLHERKAERAEI 226 Query: 184 MAKRRSKL 207 +R S L Sbjct: 227 KKRRASSL 234
>RS6_MANSE (Q94624) 40S ribosomal protein S6| Length = 253 Score = 54.3 bits (129), Expect = 2e-07 Identities = 30/62 (48%), Positives = 35/62 (56%) Frame = +1 Query: 16 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSESMAKR 195 KAPKIQRLVTP+ LQ S A+Y KLLAQR KE + RR E + +R Sbjct: 176 KAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKSAEADYAKLLAQRKKESKVRRQEEIKRR 235 Query: 196 RS 201 RS Sbjct: 236 RS 237
>RS6_APLCA (Q9BMX5) 40S ribosomal protein S6| Length = 247 Score = 53.9 bits (128), Expect = 3e-07 Identities = 33/70 (47%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = +1 Query: 1 GKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRS 177 GKK SKAPKIQRLVTP+ LQ + AEY KLLAQR+KE ++R+ Sbjct: 167 GKKAKSKAPKIQRLVTPVVLQRKRARMALKKKRVTKKREDHAEYTKLLAQRMKEAKERKM 226 Query: 178 E-SMAKRRSK 204 E + RSK Sbjct: 227 ERKRSNSRSK 236
>RS6_SPOFR (Q95V32) 40S ribosomal protein S6| Length = 253 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/62 (45%), Positives = 33/62 (53%) Frame = +1 Query: 16 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSESMAKR 195 KAPKIQRLVTP+ LQ +Y KLLAQR KE + RR E + +R Sbjct: 176 KAPKIQRLVTPVVLQRRRHRLALKKKRLAKRKQSENDYAKLLAQRKKESKVRRQEELKRR 235 Query: 196 RS 201 RS Sbjct: 236 RS 237
>RS6_DROME (P29327) 40S ribosomal protein S6| Length = 248 Score = 51.2 bits (121), Expect = 2e-06 Identities = 26/68 (38%), Positives = 36/68 (52%) Frame = +1 Query: 4 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 183 K SKAPKIQRL+TP+ LQ +A+Y KLL QR KE + +R E+ Sbjct: 169 KATSKAPKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKAKREEA 228 Query: 184 MAKRRSKL 207 +R + + Sbjct: 229 KRRRSASI 236
>RS6A_SCHPO (P05752) 40S ribosomal protein S6-A| Length = 239 Score = 50.4 bits (119), Expect = 3e-06 Identities = 28/68 (41%), Positives = 37/68 (54%) Frame = +1 Query: 4 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 183 K +KAPKIQRLVTP TLQ EAAE+ +L+A+R+ E + +R Sbjct: 170 KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKREVV 229 Query: 184 MAKRRSKL 207 A+R S L Sbjct: 230 KARRASSL 237
>RS6_KLULA (Q6CM04) 40S ribosomal protein S6| Length = 236 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/68 (41%), Positives = 36/68 (52%) Frame = +1 Query: 4 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 183 K +KAPKIQRLVTP LQ AAEY +LLA+RL E++ ++E Sbjct: 167 KSYTKAPKIQRLVTPQRLQRKRQQKSLKIKNAQAQREAAAEYAQLLAKRLSERKAEKAEV 226 Query: 184 MAKRRSKL 207 +R S L Sbjct: 227 RKRRASSL 234
>RS6_CANGA (Q6FJH3) 40S ribosomal protein S6| Length = 236 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/68 (41%), Positives = 37/68 (54%) Frame = +1 Query: 4 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 183 K +KAPKIQRLVTP LQ AAEY +LLA+RL E++ ++E+ Sbjct: 167 KTYTKAPKIQRLVTPQRLQRKRYQRNLKVRNAQAQREAAAEYAQLLAKRLAERKAEKAET 226 Query: 184 MAKRRSKL 207 +R S L Sbjct: 227 RKRRASSL 234
>RS6_ASHGO (Q74ZK3) 40S ribosomal protein S6| Length = 236 Score = 49.7 bits (117), Expect = 5e-06 Identities = 28/68 (41%), Positives = 36/68 (52%) Frame = +1 Query: 4 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 183 K +KAPKIQRLVTP LQ AAEY +LLA+RL E++ ++E Sbjct: 167 KTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLTEKKAEKAEE 226 Query: 184 MAKRRSKL 207 +R S L Sbjct: 227 RKRRASSL 234
>RS6_YARLI (Q6C169) 40S ribosomal protein S6| Length = 242 Score = 49.3 bits (116), Expect = 7e-06 Identities = 26/69 (37%), Positives = 36/69 (52%) Frame = +1 Query: 1 GKKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSE 180 GK +KAPKIQRL+TP L AAEY +LLA+R+ E++ ++E Sbjct: 167 GKTYTKAPKIQRLITPRRLAHKAQLREKKVKAIQASKDAAAEYAQLLAKRVAEKKSEKAE 226 Query: 181 SMAKRRSKL 207 +R S L Sbjct: 227 EKKRRASSL 235
>RS6_YEAST (P02365) 40S ribosomal protein S6 (S10) (YS4) (RP9)| Length = 236 Score = 49.3 bits (116), Expect = 7e-06 Identities = 28/68 (41%), Positives = 36/68 (52%) Frame = +1 Query: 4 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 183 K +KAPKIQRLVTP LQ AAEY +LLA+RL E++ ++E Sbjct: 167 KTYTKAPKIQRLVTPQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEI 226 Query: 184 MAKRRSKL 207 +R S L Sbjct: 227 RKRRASSL 234
>RS6B_SCHPO (Q9C0Z7) 40S ribosomal protein S6-B| Length = 239 Score = 48.5 bits (114), Expect = 1e-05 Identities = 26/68 (38%), Positives = 37/68 (54%) Frame = +1 Query: 4 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 183 K +KAPKIQRLVTP TLQ EAAE+ +L+A+R+ E + ++ Sbjct: 170 KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAEAKQKKEVV 229 Query: 184 MAKRRSKL 207 A+R S + Sbjct: 230 KARRASSM 237
>RS6_BRAFL (O01727) 40S ribosomal protein S6| Length = 244 Score = 45.4 bits (106), Expect = 1e-04 Identities = 29/66 (43%), Positives = 34/66 (51%) Frame = +1 Query: 4 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 183 K+ K PKIQRL+TP LQ E A Y KLLA+R KE+R E+ Sbjct: 169 KQKFKTPKIQRLITPQRLQRKRHMRAVKRRRYAKQREEEATYAKLLAKRKKEER----EA 224 Query: 184 MAKRRS 201 AKRRS Sbjct: 225 HAKRRS 230
>RS6_KLUMA (P41798) 40S ribosomal protein S6 (Ribosomal protein S10)| Length = 235 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/68 (42%), Positives = 35/68 (51%) Frame = +1 Query: 4 KKVSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSES 183 K +KAPKIQRLVTP LQ AAEY +LLA+RL E R++E Sbjct: 167 KTYTKAPKIQRLVTPQRLQRKRQQKALKIKNAQAQREAAAEYAQLLAKRLAE---RKAEV 223 Query: 184 MAKRRSKL 207 +R S L Sbjct: 224 RKRRASSL 231
>RS6_AEDAE (Q9U761) 40S ribosomal protein S6| Length = 346 Score = 44.3 bits (103), Expect = 2e-04 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = +1 Query: 1 GKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRS 177 GKK +KAPKIQRL+TP+ LQ AEY K+L R +++R RR Sbjct: 167 GKKARTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRR 226 Query: 178 ESMAKRRSKLS 210 ++ R S Sbjct: 227 SRLSSMRDSRS 237
>RS6_AEDAL (Q9U762) 40S ribosomal protein S6| Length = 349 Score = 43.5 bits (101), Expect = 4e-04 Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = +1 Query: 1 GKKV-SKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRS 177 GKK +KAPKIQRL+TP+ LQ AEY K+L R +++R RR Sbjct: 167 GKKPRTKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQERIRRR 226 Query: 178 ESMAKRRSKLS 210 ++ R S Sbjct: 227 SRLSSMRDSRS 237
>RS6_CAEEL (Q9NEN6) 40S ribosomal protein S6| Length = 246 Score = 39.3 bits (90), Expect = 0.007 Identities = 24/64 (37%), Positives = 32/64 (50%) Frame = +1 Query: 19 APKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLAQRLKEQRDRRSESMAKRR 198 APKIQRL+TP + +AA Y KLLA+ KE+ D + +A+RR Sbjct: 173 APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLAKYSKEEHDAK---IARRR 229 Query: 199 SKLS 210 S S Sbjct: 230 SSAS 233
>RS6_LEIMA (Q9NE83) 40S ribosomal protein S6| Length = 249 Score = 32.7 bits (73), Expect = 0.64 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Frame = +1 Query: 16 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLA--QRLKEQRDRRSESMA 189 KAPKIQRL+TP +E EY +L+A +R QRD + Sbjct: 175 KAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQRDHSKKHTR 234 Query: 190 K 192 K Sbjct: 235 K 235
>RS6_LEIIN (O44012) 40S ribosomal protein S6| Length = 249 Score = 32.7 bits (73), Expect = 0.64 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Frame = +1 Query: 16 KAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXSEAAEYQKLLA--QRLKEQRDRRSESMA 189 KAPKIQRL+TP +E EY +L+A +R QRD + Sbjct: 175 KAPKIQRLITPRVKARRAKKAKDAIAKVRASAAERREYLRLIASNRRALRQRDHSKKHTQ 234 Query: 190 K 192 K Sbjct: 235 K 235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,096,485 Number of Sequences: 219361 Number of extensions: 936976 Number of successful extensions: 2554 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 2484 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2551 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4085413911 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
