ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16j07 |
|---|---|
| Clone Library Name | barley_pub |
>YEZ3_YEAST (P32656) Hypothetical 26.3 kDa protein in RAD4-CHD1 intergenic| region Length = 232 Score = 34.7 bits (78), Expect = 0.089 Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 43/151 (28%) Frame = +2 Query: 89 DHRGTPQHPARTCTL-------------------------ESEDEAICWGIAYCVKGGLE 193 DHRGTP +P R TL + D+ + G+ Y + E Sbjct: 45 DHRGTPANPGRVATLIPYEDIIRQTAFLKNVNLYSESAPIQDPDDLVTIGVVYYIPP--E 102 Query: 194 KEREAMQYLERRECE----YDQKISVDFYKD-----GNSLE---------PAVTDVLVFV 319 +E +YL RE ++ ++ ++ ++ G +LE V V++ Sbjct: 103 HAQEVREYLNVREQNGYTLHEVEVHLETNREHEAELGEALEQLPRHNKSGKRVLLTSVYI 162 Query: 320 STPDPVGNKYYLGPAALEDMARQIATASGPN 412 T D N+ ++GP +++ A+ IA + GP+ Sbjct: 163 GTID---NEAFVGPETVDETAKVIAVSHGPS 190
>YAIC_ECOLI (P0AAP1) Hypothetical protein yaiC| Length = 371 Score = 32.3 bits (72), Expect = 0.44 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = +3 Query: 12 PASISTTXILGIHQGLQADLQFSLALTIEARRSIRPGLAPLNPKMKPY 155 PA + T +L +H+GL L T + I G+APLNP+M Y Sbjct: 301 PAESAITAMLRVHEGLNT---LRLPNTPQVTLRISVGVAPLNPQMSHY 345
>YAIC_ECOL6 (P0AAP2) Hypothetical protein yaiC| Length = 371 Score = 32.3 bits (72), Expect = 0.44 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = +3 Query: 12 PASISTTXILGIHQGLQADLQFSLALTIEARRSIRPGLAPLNPKMKPY 155 PA + T +L +H+GL L T + I G+APLNP+M Y Sbjct: 301 PAESAITAMLRVHEGLNT---LRLPNTPQVTLRISVGVAPLNPQMSHY 345
>ILVC_CHLTE (Q8KER7) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 330 Score = 29.6 bits (65), Expect = 2.9 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Frame = +2 Query: 131 LESEDEAICWGIAYCVKGGLEKEREAMQYLERR--ECEYDQKISVDFYKDG 277 L E +C G A +K G E EA E EC ++ K+ VD Y +G Sbjct: 191 LFGEQAVLCGGSAELIKAGFETLTEAGYPAELAYFECMHELKLIVDLYYEG 241
>ILVC_CHLCH (Q3APC3) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) Length = 330 Score = 29.6 bits (65), Expect = 2.9 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%) Frame = +2 Query: 131 LESEDEAICWGIAYCVKGGLEKEREA--MQYLERRECEYDQKISVDFYKDG 277 L E +C G A +K G E EA + L EC ++ K+ VD Y +G Sbjct: 191 LFGEQAVLCGGSAELIKAGFETLVEAGYPEELAYFECMHELKLIVDLYYEG 241
>RLUF_SALTY (Q8ZKL1) Ribosomal large subunit pseudouridine synthase F (EC| 5.4.99.-) (rRNA-uridine isomerase F) (rRNA pseudouridylate synthase F) Length = 289 Score = 29.3 bits (64), Expect = 3.7 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%) Frame = +2 Query: 170 YCVKGGLEKEREAMQYLE--------RRECEYDQKISVDFYK-DGNSLEPAVTDVLVFVS 322 Y + G+ REA +++E +R DQ ++ D K +G +EP D LV ++ Sbjct: 12 YISESGICSRREADRFIEQGNVFINGKRAAIGDQVVAGDIVKVNGRLIEPREADDLVLIA 71 Query: 323 TPDPVG 340 PVG Sbjct: 72 LNKPVG 77
>LYTA_STAAU (P24556) Autolysin (EC 3.5.1.28) (N-acetylmuramoyl-L-alanine| amidase) Length = 481 Score = 29.3 bits (64), Expect = 3.7 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 266 YKDGNSLEPAVTDVLVFVSTPDPVGNKYYLGPAALEDMARQIAT 397 Y GN++ A+ + V T + +GNKYY G + M AT Sbjct: 239 YVSGNTVWQALDESQVGWHTANQIGNKYYYGIEVCQSMGADNAT 282
>RLUF_SALTI (Q8Z1V3) Ribosomal large subunit pseudouridine synthase F (EC| 5.4.99.-) (rRNA-uridine isomerase F) (rRNA pseudouridylate synthase F) Length = 289 Score = 28.9 bits (63), Expect = 4.9 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 9/66 (13%) Frame = +2 Query: 170 YCVKGGLEKEREAMQYLE--------RRECEYDQKISVDFYK-DGNSLEPAVTDVLVFVS 322 Y + G+ REA +++E +R DQ ++ D K +G +EP D LV ++ Sbjct: 12 YISESGICSRREADRFIEQGNVFINGKRAAIGDQVVAGDVVKVNGRLIEPREADDLVLIA 71 Query: 323 TPDPVG 340 PVG Sbjct: 72 LNKPVG 77
>Y691_BACLD (Q65MT6) UPF0316 protein BLi00691/BL01474| Length = 184 Score = 28.5 bits (62), Expect = 6.4 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 3/38 (7%) Frame = +2 Query: 158 WGIAYCVKGGLEKEREAMQYLERRECE---YDQKISVD 262 +G+ + V GGLE +R AMQ L R+ E Y+ S+D Sbjct: 118 YGVTHWVVGGLEGDRTAMQILTPRKYELQLYETIKSID 155
>TNR5_MOUSE (P27512) Tumor necrosis factor receptor superfamily member 5| precursor (CD40L receptor) (B-cell surface antigen CD40) (BP50) (CDw40) Length = 289 Score = 28.5 bits (62), Expect = 6.4 Identities = 15/45 (33%), Positives = 20/45 (44%) Frame = -1 Query: 368 KQQGQDSTCCQLDQEWIRILIHPSQLVPENFHPCRNPQRSSGHTR 234 KQ D CC L Q R+ H + L HPC + + S+ R Sbjct: 29 KQYLHDGQCCDLCQPGSRLTSHCTALEKTQCHPCDSGEFSAQWNR 73
>PT1_CHLPN (Q9Z9E3) Phosphoenolpyruvate-protein phosphotransferase (EC| 2.7.3.9) (Phosphotransferase system, enzyme I) Length = 571 Score = 28.5 bits (62), Expect = 6.4 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -3 Query: 96 LWSMQARIEGPLVALDEXRGXLSSKSKPAS 7 LW++ R G LV +D RG L KPA+ Sbjct: 223 LWNIAKRYNGKLVLIDGYRGELIFNPKPAT 252
>CISH_CHICK (Q9PW70) Cytokine-inducible SH2-containing protein (CIS) (CIS-1)| (Suppressor of cytokine signaling) (SOCS) Length = 249 Score = 28.5 bits (62), Expect = 6.4 Identities = 17/44 (38%), Positives = 21/44 (47%) Frame = +2 Query: 20 DFDDKXPRXSSRATSGPSILACIDHRGTPQHPARTCTLESEDEA 151 ++ D R S S P ILA D QH +CT ES+ EA Sbjct: 134 EYADSKFRLDSNYLSKPRILAFPDVVSLIQHYVTSCTTESKSEA 177
>Y208_ENCCU (Q8SWH4) Hypothetical protein ECU02_0080| Length = 579 Score = 28.1 bits (61), Expect = 8.3 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +2 Query: 179 KGGLEKERE-AMQYLERRECEYDQKISVDFYKDGNSLEPAVTDVLVFVSTPDPVGN 343 KGG E++R A+ LER E + + V +KD S P V ++ V+ + +GN Sbjct: 454 KGGSERQRMVAIGVLERGEKKMTGVVEVGMFKDSPSGCPVVYHLMFRVTGIEEMGN 509
>FPRP_RAT (Q62786) Prostaglandin F2 receptor negative regulator precursor| (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor-associated protein) (CD315 antigen) Length = 879 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +3 Query: 216 TWREENASMTRRSLWISTRMEILWNQL*RMY*YSYPLLIQLATSTILALL 365 +W+ E A + R ++I+ +M++L + YPLLI + ST++ LL Sbjct: 805 SWQRE-AEIHSRPIFITVKMDVLNA-------FKYPLLIGVGLSTVIGLL 846
>FPRP_MOUSE (Q9WV91) Prostaglandin F2 receptor negative regulator precursor| (Prostaglandin F2-alpha receptor regulatory protein) (Prostaglandin F2-alpha receptor-associated protein) (CD315 antigen) Length = 879 Score = 28.1 bits (61), Expect = 8.3 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +3 Query: 216 TWREENASMTRRSLWISTRMEILWNQL*RMY*YSYPLLIQLATSTILALL 365 +W+ E A + R ++I+ +M++L + YPLLI + ST++ LL Sbjct: 805 SWQRE-AEIHSRPIFITVKMDVLNA-------FKYPLLIGVGLSTVIGLL 846
>PE2R2_CANFA (Q9XT82) Prostaglandin E2 receptor, EP2 subtype (Prostanoid EP2| receptor) (PGE receptor, EP2 subtype) Length = 361 Score = 28.1 bits (61), Expect = 8.3 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = +2 Query: 41 RXSSRATSGPSILACIDHRGTPQHPARTCTLESEDEAICWGI 166 R S R+ GPS+ +C D GT + R E D I I Sbjct: 227 RRSGRSRCGPSLGSCRDGSGTRRRGERVSVAEETDHLILLAI 268
>ATP6_ALBCO (P48893) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 214 Score = 28.1 bits (61), Expect = 8.3 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +3 Query: 213 STWREENASMTRRSLWISTRMEILWNQL*RMY*YSYPLLIQLATSTILALLLW 371 S W ++T+ L I + I++N L M ++Y + L + LALLLW Sbjct: 48 SNWNNSTYNLTKSLLTIMMVL-IIFNNLLGMAPFTYGITTSLWVNMTLALLLW 99 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,637,893 Number of Sequences: 219361 Number of extensions: 1287006 Number of successful extensions: 3647 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3646 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2169600302 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
