ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags16i18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188545.1| Oryza sativa (japonica cultivar-group), predic... 135 2e-28
2dbj|AK100398.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 2e-28
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
4dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
5dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic D... 121 3e-24
6gb|AY108382.1| Zea mays PCO065971 mRNA sequence 80 1e-11
7emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segme... 48 0.036
8emb|AJ006532.1|PAB6532 Pyrococcus abyssi DNA ligase gene and 5'a... 48 0.036
9gb|AC183538.4| Pan troglodytes BAC clone CH251-395P17 from chrom... 46 0.14
10gb|AY459388.1| Pan paniscus LDOC1 gene, complete cds 46 0.14
11gb|AY459387.1| Gorilla gorilla LDOC1 gene, complete cds 46 0.14
12emb|AL109799.7|HSBG82I1 Human DNA sequence from clone GS1-82I1 o... 46 0.14
13emb|AL669845.9| Mouse DNA sequence from clone RP23-43C21 on chro... 44 0.56
14gb|AC152978.1| Mus musculus BAC RP23-111A15 (Roswell Park Cance... 42 2.2
15gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, co... 42 2.2
16gb|AC125010.6| Mus musculus chromosome 10, clone RP24-117L12, co... 42 2.2
17ref|XM_749367.1| Aspergillus fumigatus Af293 Taz1-interacting fa... 42 2.2
18gb|AC002287.1|HUAC002287 Homo sapiens Chromosome 16 BAC clone CI... 42 2.2
19gb|AC125111.3| Mus musculus BAC clone RP24-238P2 from chromosome... 42 2.2
20gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete s... 42 2.2
21emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on ch... 42 2.2
22emb|BX324004.6| Zebrafish DNA sequence from clone CH211-284O17 i... 42 2.2
23gb|AC130450.3| Homo sapiens chromosome 16 clone CTA-237H1, compl... 42 2.2
24gb|AY913795.1| Mint virus 2 replicase gene, partial cds; and p24... 42 2.2
25gb|AC130466.2| Homo sapiens chromosome 16 clone CTC-591M7, compl... 42 2.2
26emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 ... 42 2.2
27emb|CR848607.2| Xenopus tropicalis finished cDNA, clone TGas005m21 42 2.2
28gb|AC163626.5| Mus musculus BAC clone RP23-137D2 from chromosome... 42 2.2
29gb|AC101672.11| Mus musculus chromosome 5, clone RP23-115F16, co... 40 8.8
30gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 40 8.8
31gb|AC117275.3| Mus musculus BAC clone RP23-383F11 from chromosom... 40 8.8
32ref|XM_947491.1| Theileria annulata strain Ankara hypothetical p... 40 8.8
33emb|AL135932.7| Human DNA sequence from clone RP4-535H23 on chro... 40 8.8
34gb|BT009429.1| Triticum aestivum clone wlmk1.pk0034.f9:fis, full... 40 8.8
35dbj|AK128035.1| Homo sapiens cDNA FLJ46154 fis, clone TESTI4001348 40 8.8
36gb|AC115224.3| Homo sapiens BAC clone RP11-700N1 from 4, complet... 40 8.8
37gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, com... 40 8.8
38gb|AC025133.6| Homo sapiens chromosome 8, clone RP11-227F6, comp... 40 8.8
39gb|AC105443.3| Homo sapiens chromosome 7 clone RP11-533N5, compl... 40 8.8
40ref|NM_198462.1| Homo sapiens FLJ46154 protein (FLJ46154), mRNA 40 8.8
41gb|AC125611.4| Homo sapiens 12 BAC RP11-161H23 (Roswell Park Can... 40 8.8
42gb|AC018643.3|AC018643 Human Chromosome 7 clone RP11-297N5, comp... 40 8.8
43gb|AC158202.2| Physcomitrella patens clone JGIASYB-1A3, complete... 40 8.8
44gb|AF144789.1|AF144789 Streptococcus mitis strain V10 DNA gyrase... 40 8.8
45gb|AF144788.1|AF144788 Streptococcus sanguinis strain V5 DNA gyr... 40 8.8
46emb|BX647348.1|HSM807492 Homo sapiens mRNA; cDNA DKFZp779D068 (f... 40 8.8
47dbj|AB026645.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 8.8
48gb|AC099719.9| Mus musculus chromosome 7, clone RP23-394F19, com... 40 8.8
49dbj|AK116680.1| Ciona intestinalis cDNA, clone:cieg003g22, full ... 40 8.8
50gb|AC109203.9| Mus musculus chromosome 18, clone RP23-2B18, comp... 40 8.8
51dbj|AP006689.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 8.8
52gb|AC011332.8| Homo sapiens chromosome 5 clone CTC-222D7, comple... 40 8.8
53dbj|AB040926.1| Homo sapiens mRNA for KIAA1493 protein, partial cds 40 8.8 
>ref|NM_188545.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1590

 Score =  135 bits (68), Expect = 2e-28
 Identities = 119/136 (87%)
 Strand = Plus / Plus

                                                                        
Query: 505  ctgttcaaaatacctgaacggcgcacatatgagccaagtaaaatggactggaagaaggta 564
            |||||||||||||||||||  ||||||||||| ||||||   ||||||||||||||||||
Sbjct: 973  ctgttcaaaatacctgaacaacgcacatatgaaccaagttccatggactggaagaaggta 1032

                                                                        
Query: 565  gtgaagaagctgcagtcatacaatcatcctatcacagcaagcaatcaagaaagaccaaaa 624
            || |||| ||||||||||| ||||  ||| |||||| | | ||||||||||| |||||||
Sbjct: 1033 gttaagaggctgcagtcattcaattctcccatcacatcgaacaatcaagaaaaaccaaaa 1092

                            
Query: 625  aatggggatgggtatc 640
            |||||| |||||||||
Sbjct: 1093 aatgggaatgggtatc 1108



 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 91/106 (85%)
 Strand = Plus / Plus

                                                                       
Query: 72  tgttgaggaggccgagcagttcctctgctccatgcttggagatcgttctgagctcagcat 131
           |||||| ||||||||||||||||| ||||| ||||| || |||  ||| |||||  ||||
Sbjct: 687 tgttgaagaggccgagcagttcctgtgctctatgctgggggataattcggagcttggcat 746

                                                         
Query: 132 gggtgtggtcagagacgtgctgggtcagtctggatatgatgttgag 177
           ||||||||||||||||||||| ||||| | |||||  |||||||||
Sbjct: 747 gggtgtggtcagagacgtgctcggtcaatatggatgcgatgttgag 792
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>dbj|AK100398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086M16, full
            insert sequence
          Length = 3420

 Score =  135 bits (68), Expect = 2e-28
 Identities = 119/136 (87%)
 Strand = Plus / Plus

                                                                        
Query: 505  ctgttcaaaatacctgaacggcgcacatatgagccaagtaaaatggactggaagaaggta 564
            |||||||||||||||||||  ||||||||||| ||||||   ||||||||||||||||||
Sbjct: 2423 ctgttcaaaatacctgaacaacgcacatatgaaccaagttccatggactggaagaaggta 2482

                                                                        
Query: 565  gtgaagaagctgcagtcatacaatcatcctatcacagcaagcaatcaagaaagaccaaaa 624
            || |||| ||||||||||| ||||  ||| |||||| | | ||||||||||| |||||||
Sbjct: 2483 gttaagaggctgcagtcattcaattctcccatcacatcgaacaatcaagaaaaaccaaaa 2542

                            
Query: 625  aatggggatgggtatc 640
            |||||| |||||||||
Sbjct: 2543 aatgggaatgggtatc 2558



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                       
Query: 72  tgttgaggaggccgagcagttcctctgctccatgcttggagatcgttctgagctcagcat 131
           |||||| ||||||||||||||||| ||||| ||||| || |||  ||| |||||  ||||
Sbjct: 702 tgttgaagaggccgagcagttcctgtgctctatgctgggggataattcggagcttggcat 761

                                
Query: 132 gggtgtggtcagagacgtgct 152
           |||||||||||||||||||||
Sbjct: 762 gggtgtggtcagagacgtgct 782



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 41/45 (91%)
 Strand = Plus / Plus

                                                         
Query: 169  gatgttgagcaggctctggacgcattgcttgatatctccggtatg 213
            ||||||||| |||||||||| ||||| ||||||||||| ||||||
Sbjct: 2069 gatgttgagaaggctctggatgcattacttgatatctcgggtatg 2113
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  121 bits (61), Expect = 3e-24
 Identities = 109/125 (87%)
 Strand = Plus / Plus

                                                                           
Query: 505     ctgttcaaaatacctgaacggcgcacatatgagccaagtaaaatggactggaagaaggta 564
               |||||||||||||||||||  ||||||||||| ||||||   ||||||||||||||||||
Sbjct: 6893098 ctgttcaaaatacctgaacaacgcacatatgaaccaagttccatggactggaagaaggta 6893157

                                                                           
Query: 565     gtgaagaagctgcagtcatacaatcatcctatcacagcaagcaatcaagaaagaccaaaa 624
               || |||| ||||||||||| ||||  ||| |||||| | | ||||||||||| |||||||
Sbjct: 6893158 gttaagaggctgcagtcattcaattctcccatcacatcgaacaatcaagaaaaaccaaaa 6893217

                    
Query: 625     aatgg 629
               |||||
Sbjct: 6893218 aatgg 6893222



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                           
Query: 72      tgttgaggaggccgagcagttcctctgctccatgcttggagatcgttctgagctcagcat 131
               |||||| ||||||||||||||||| ||||| ||||| || |||  ||| |||||  ||||
Sbjct: 6889145 tgttgaagaggccgagcagttcctgtgctctatgctgggggataattcggagcttggcat 6889204

                                    
Query: 132     gggtgtggtcagagacgtgct 152
               |||||||||||||||||||||
Sbjct: 6889205 gggtgtggtcagagacgtgct 6889225



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                   
Query: 178     caggctctggacgcattgcttgatatctccggtatg 213
               ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 6891676 caggctctggatgcattacttgatatctcgggtatg 6891711
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>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0492F05
          Length = 159242

 Score =  121 bits (61), Expect = 3e-24
 Identities = 109/125 (87%)
 Strand = Plus / Plus

                                                                         
Query: 505   ctgttcaaaatacctgaacggcgcacatatgagccaagtaaaatggactggaagaaggta 564
             |||||||||||||||||||  ||||||||||| ||||||   ||||||||||||||||||
Sbjct: 60822 ctgttcaaaatacctgaacaacgcacatatgaaccaagttccatggactggaagaaggta 60881

                                                                         
Query: 565   gtgaagaagctgcagtcatacaatcatcctatcacagcaagcaatcaagaaagaccaaaa 624
             || |||| ||||||||||| ||||  ||| |||||| | | ||||||||||| |||||||
Sbjct: 60882 gttaagaggctgcagtcattcaattctcccatcacatcgaacaatcaagaaaaaccaaaa 60941

                  
Query: 625   aatgg 629
             |||||
Sbjct: 60942 aatgg 60946



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                         
Query: 72    tgttgaggaggccgagcagttcctctgctccatgcttggagatcgttctgagctcagcat 131
             |||||| ||||||||||||||||| ||||| ||||| || |||  ||| |||||  ||||
Sbjct: 56869 tgttgaagaggccgagcagttcctgtgctctatgctgggggataattcggagcttggcat 56928

                                  
Query: 132   gggtgtggtcagagacgtgct 152
             |||||||||||||||||||||
Sbjct: 56929 gggtgtggtcagagacgtgct 56949



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 178   caggctctggacgcattgcttgatatctccggtatg 213
             ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 59400 caggctctggatgcattacttgatatctcgggtatg 59435
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>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0443E07
          Length = 159440

 Score =  121 bits (61), Expect = 3e-24
 Identities = 109/125 (87%)
 Strand = Plus / Plus

                                                                         
Query: 505   ctgttcaaaatacctgaacggcgcacatatgagccaagtaaaatggactggaagaaggta 564
             |||||||||||||||||||  ||||||||||| ||||||   ||||||||||||||||||
Sbjct: 14916 ctgttcaaaatacctgaacaacgcacatatgaaccaagttccatggactggaagaaggta 14975

                                                                         
Query: 565   gtgaagaagctgcagtcatacaatcatcctatcacagcaagcaatcaagaaagaccaaaa 624
             || |||| ||||||||||| ||||  ||| |||||| | | ||||||||||| |||||||
Sbjct: 14976 gttaagaggctgcagtcattcaattctcccatcacatcgaacaatcaagaaaaaccaaaa 15035

                  
Query: 625   aatgg 629
             |||||
Sbjct: 15036 aatgg 15040



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 71/81 (87%)
 Strand = Plus / Plus

                                                                         
Query: 72    tgttgaggaggccgagcagttcctctgctccatgcttggagatcgttctgagctcagcat 131
             |||||| ||||||||||||||||| ||||| ||||| || |||  ||| |||||  ||||
Sbjct: 10963 tgttgaagaggccgagcagttcctgtgctctatgctgggggataattcggagcttggcat 11022

                                  
Query: 132   gggtgtggtcagagacgtgct 152
             |||||||||||||||||||||
Sbjct: 11023 gggtgtggtcagagacgtgct 11043



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 178   caggctctggacgcattgcttgatatctccggtatg 213
             ||||||||||| ||||| ||||||||||| ||||||
Sbjct: 13494 caggctctggatgcattacttgatatctcgggtatg 13529
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>gb|AY108382.1| Zea mays PCO065971 mRNA sequence
          Length = 885

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 67/76 (88%)
 Strand = Plus / Plus

                                                                       
Query: 128 gcatgggtgtggtcagagacgtgctgggtcagtctggatatgatgttgagcaggctctgg 187
           |||||||||| |||||||||||||| || |||| ||| || ||||||||| ||||| |||
Sbjct: 24  gcatgggtgttgtcagagacgtgctaggccagtatgggtacgatgttgagaaggctttgg 83

                           
Query: 188 acgcattgcttgatat 203
           | ||||||||||||||
Sbjct: 84  atgcattgcttgatat 99



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                       
Query: 492 agtcttggagtcgctgttcaaaatacctgaacggcgcacatatgagccaagtaaaatgga 551
           |||| |||| || ||||| ||||| ||||||   ||||| ||||||||||||   |||||
Sbjct: 400 agtcctggattcactgtttaaaattcctgaaacacgcacgtatgagccaagttctatgga 459

                                      
Query: 552 ctggaagaaggtagtgaagaagctgca 578
           |||||| |||||||| ||||| |||||
Sbjct: 460 ctggaaaaaggtagtaaagaaactgca 486
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>emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6
          Length = 293250

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 70     aatgttgaggaggccgagcagttc 93
              ||||||||||||||||||||||||
Sbjct: 207442 aatgttgaggaggccgagcagttc 207419
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>emb|AJ006532.1|PAB6532 Pyrococcus abyssi DNA ligase gene and 5'and 3' UTRs
          Length = 2056

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 70   aatgttgaggaggccgagcagttc 93
            ||||||||||||||||||||||||
Sbjct: 1153 aatgttgaggaggccgagcagttc 1176
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>gb|AC183538.4| Pan troglodytes BAC clone CH251-395P17 from chromosome x, complete
              sequence
          Length = 186120

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 269    caggaaatggattatttgaagaa 291
              |||||||||||||||||||||||
Sbjct: 176961 caggaaatggattatttgaagaa 176983
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>gb|AY459388.1| Pan paniscus LDOC1 gene, complete cds
          Length = 57900

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 269   caggaaatggattatttgaagaa 291
             |||||||||||||||||||||||
Sbjct: 42597 caggaaatggattatttgaagaa 42575
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>gb|AY459387.1| Gorilla gorilla LDOC1 gene, complete cds
          Length = 61316

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 269   caggaaatggattatttgaagaa 291
             |||||||||||||||||||||||
Sbjct: 46033 caggaaatggattatttgaagaa 46011
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>emb|AL109799.7|HSBG82I1 Human DNA sequence from clone GS1-82I1 on chromosome Xq26.3-27.3 Contains
              a CGI-79 protein (CGI-79) pseudogene, the SPANXC gene for
              SPANX family, member C, the LDOC1 gene for leucine zipper
              down-regulated in cancer 1 and a CpG island, complete
              sequence
          Length = 127046

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 269    caggaaatggattatttgaagaa 291
              |||||||||||||||||||||||
Sbjct: 107626 caggaaatggattatttgaagaa 107604
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>emb|AL669845.9| Mouse DNA sequence from clone RP23-43C21 on chromosome 11, complete
              sequence
          Length = 243954

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 251    cctctccaaatatcttcccagg 272
              ||||||||||||||||||||||
Sbjct: 218985 cctctccaaatatcttcccagg 218964
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>gb|AC152978.1| Mus musculus  BAC RP23-111A15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 180393

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 261   tatcttcccaggaaatggatt 281
             |||||||||||||||||||||
Sbjct: 38733 tatcttcccaggaaatggatt 38753
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>gb|AC124830.8| Mus musculus chromosome 17, clone RP24-165B21, complete sequence
          Length = 176889

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 36    ggacagagaaagtggaggtgg 56
             |||||||||||||||||||||
Sbjct: 73787 ggacagagaaagtggaggtgg 73767
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>gb|AC125010.6| Mus musculus chromosome 10, clone RP24-117L12, complete sequence
          Length = 223541

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 261   tatcttcccaggaaatggatt 281
             |||||||||||||||||||||
Sbjct: 17872 tatcttcccaggaaatggatt 17852
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>ref|XM_749367.1| Aspergillus fumigatus Af293 Taz1-interacting factor 1 TAF1
           (Afu3g11590) partial mRNA
          Length = 3795

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 ccatgcttggagatcgttctg 121
           |||||||||||||||||||||
Sbjct: 186 ccatgcttggagatcgttctg 166
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>gb|AC002287.1|HUAC002287 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-237H1  ~complete genomic
              sequence, complete sequence
          Length = 188636

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     ctggaatgatgagagaaatgg 35
              |||||||||||||||||||||
Sbjct: 188462 ctggaatgatgagagaaatgg 188482
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>gb|AC125111.3| Mus musculus BAC clone RP24-238P2 from chromosome 1, complete sequence
          Length = 170703

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   tatgatgttgagcaggctctg 186
             |||||||||||||||||||||
Sbjct: 20396 tatgatgttgagcaggctctg 20416
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>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence
          Length = 131563

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 285    tgaagaagaatctgctgcaag 305
              |||||||||||||||||||||
Sbjct: 104685 tgaagaagaatctgctgcaag 104705
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>emb|AL450386.17| Human DNA sequence from clone RP11-466B20 on chromosome 10 Contains a
             novel gene and a CpG island, complete sequence
          Length = 91331

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 317   gtccatgccagttcccagaag 337
             |||||||||||||||||||||
Sbjct: 53569 gtccatgccagttcccagaag 53549
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>emb|BX324004.6| Zebrafish DNA sequence from clone CH211-284O17 in linkage group 12,
             complete sequence
          Length = 136645

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 401   agagcagctacatgaaggctg 421
             |||||||||||||||||||||
Sbjct: 99192 agagcagctacatgaaggctg 99212
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>gb|AC130450.3| Homo sapiens chromosome 16 clone CTA-237H1, complete sequence
          Length = 183842

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 15     ctggaatgatgagagaaatgg 35
              |||||||||||||||||||||
Sbjct: 183668 ctggaatgatgagagaaatgg 183688
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>gb|AY913795.1| Mint virus 2 replicase gene, partial cds; and p24, movement protein,
            coat protein, and RNA binding protein genes, complete cds
          Length = 3897

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 566  tgaagaagctgcagtcatacaatca 590
            ||||||||||||||| |||||||||
Sbjct: 3365 tgaagaagctgcagtgatacaatca 3389
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>gb|AC130466.2| Homo sapiens chromosome 16 clone CTC-591M7, complete sequence
          Length = 106998

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    ctggaatgatgagagaaatgg 35
             |||||||||||||||||||||
Sbjct: 10350 ctggaatgatgagagaaatgg 10370
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>emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 in linkage group 12,
              complete sequence
          Length = 203958

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 401    agagcagctacatgaaggctg 421
              |||||||||||||||||||||
Sbjct: 106061 agagcagctacatgaaggctg 106041
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>emb|CR848607.2| Xenopus tropicalis finished cDNA, clone TGas005m21
          Length = 2336

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 92   tcctctgctccatgcttggag 112
            |||||||||||||||||||||
Sbjct: 2048 tcctctgctccatgcttggag 2028
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>gb|AC163626.5| Mus musculus BAC clone RP23-137D2 from chromosome 1, complete sequence
          Length = 219189

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 166    tatgatgttgagcaggctctg 186
              |||||||||||||||||||||
Sbjct: 106030 tatgatgttgagcaggctctg 106050
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>gb|AC101672.11| Mus musculus chromosome 5, clone RP23-115F16, complete sequence
          Length = 204025

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    aagagtccatgccagttccc 332
              ||||||||||||||||||||
Sbjct: 173709 aagagtccatgccagttccc 173728
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 258     aaatatcttcccaggaaatg 277
               ||||||||||||||||||||
Sbjct: 2053445 aaatatcttcccaggaaatg 2053426
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>gb|AC117275.3| Mus musculus BAC clone RP23-383F11 from chromosome 18, complete sequence
          Length = 209162

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    tcaaaagagtccatgccagt 328
              ||||||||||||||||||||
Sbjct: 185709 tcaaaagagtccatgccagt 185728
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>ref|XM_947491.1| Theileria annulata strain Ankara hypothetical protein (TA11500)
           partial mRNA
          Length = 1809

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 471 ggattccaagatgccacagc 490
           ||||||||||||||||||||
Sbjct: 876 ggattccaagatgccacagc 857
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>emb|AL135932.7| Human DNA sequence from clone RP4-535H23 on chromosome 11p12-14.1
             Contains STSs, complete sequence
          Length = 143321

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 622   aaaaatggggatgggtatcg 641
             ||||||||||||||||||||
Sbjct: 72383 aaaaatggggatgggtatcg 72402
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>gb|BT009429.1| Triticum aestivum clone wlmk1.pk0034.f9:fis, full insert mRNA
           sequence
          Length = 1021

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 494 tcttggagtcgctgttcaaa 513
           ||||||||||||||||||||
Sbjct: 373 tcttggagtcgctgttcaaa 392
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>dbj|AK128035.1| Homo sapiens cDNA FLJ46154 fis, clone TESTI4001348
          Length = 4842

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 622  aaaaatggggatgggtatcg 641
            ||||||||||||||||||||
Sbjct: 3024 aaaaatggggatgggtatcg 3043
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>gb|AC115224.3| Homo sapiens BAC clone RP11-700N1 from 4, complete sequence
          Length = 63459

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     agcaatggctggaatgatgagaga 30
             |||||||||||||| |||||||||
Sbjct: 54504 agcaatggctggaaagatgagaga 54481
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>gb|AC013543.16| Homo sapiens chromosome 8, clone RP11-317H6, complete sequence
          Length = 177777

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    tcctctgctccatgcttgga 111
             ||||||||||||||||||||
Sbjct: 74526 tcctctgctccatgcttgga 74545
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>gb|AC025133.6| Homo sapiens chromosome 8, clone RP11-227F6, complete sequence
          Length = 161644

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 92   tcctctgctccatgcttgga 111
            ||||||||||||||||||||
Sbjct: 8626 tcctctgctccatgcttgga 8607
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>gb|AC105443.3| Homo sapiens chromosome 7 clone RP11-533N5, complete sequence
          Length = 185272

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 239    tgaatggctcatcctctcca 258
              ||||||||||||||||||||
Sbjct: 183740 tgaatggctcatcctctcca 183759
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>ref|NM_198462.1| Homo sapiens FLJ46154 protein (FLJ46154), mRNA
          Length = 4741

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 622  aaaaatggggatgggtatcg 641
            ||||||||||||||||||||
Sbjct: 2929 aaaaatggggatgggtatcg 2948
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>gb|AC125611.4| Homo sapiens 12 BAC RP11-161H23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 194578

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 560   aggtagtgaagaagctgcag 579
             ||||||||||||||||||||
Sbjct: 44390 aggtagtgaagaagctgcag 44371
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>gb|AC018643.3|AC018643 Human Chromosome 7 clone RP11-297N5, complete sequence
          Length = 198470

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   tgaatggctcatcctctcca 258
             ||||||||||||||||||||
Sbjct: 61116 tgaatggctcatcctctcca 61135
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>gb|AC158202.2| Physcomitrella patens clone JGIASYB-1A3, complete sequence
          Length = 40238

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 608  atcaagaaagaccaaaaaat 627
            ||||||||||||||||||||
Sbjct: 8026 atcaagaaagaccaaaaaat 8007
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>gb|AF144789.1|AF144789 Streptococcus mitis strain V10 DNA gyrase subunit B (gyrB) gene,
           partial cds
          Length = 311

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 277 ggattatttgaagaagaatctgct 300
           ||||||||||||||| ||||||||
Sbjct: 81  ggattatttgaagaacaatctgct 58
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>gb|AF144788.1|AF144788 Streptococcus sanguinis strain V5 DNA gyrase subunit B (gyrB) gene,
           partial cds
          Length = 311

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 277 ggattatttgaagaagaatctgct 300
           ||||||||||||||| ||||||||
Sbjct: 81  ggattatttgaagaacaatctgct 58
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>emb|BX647348.1|HSM807492 Homo sapiens mRNA; cDNA DKFZp779D068 (from clone DKFZp779D068)
          Length = 4818

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 622  aaaaatggggatgggtatcg 641
            ||||||||||||||||||||
Sbjct: 1889 aaaaatggggatgggtatcg 1908
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>dbj|AB026645.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6
          Length = 81020

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 236   aaatgaatggctcatcctctccaa 259
             ||||||||||||| ||||||||||
Sbjct: 17882 aaatgaatggctcttcctctccaa 17905
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>gb|AC099719.9| Mus musculus chromosome 7, clone RP23-394F19, complete sequence
          Length = 215718

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 601    gcaagcaatcaagaaagacc 620
              ||||||||||||||||||||
Sbjct: 141047 gcaagcaatcaagaaagacc 141028
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>dbj|AK116680.1| Ciona intestinalis cDNA, clone:cieg003g22, full insert sequence
          Length = 3174

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    agcgtcagcaatggctggaa 20
            ||||||||||||||||||||
Sbjct: 1900 agcgtcagcaatggctggaa 1881
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>gb|AC109203.9| Mus musculus chromosome 18, clone RP23-2B18, complete sequence
          Length = 216783

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    tcaaaagagtccatgccagt 328
              ||||||||||||||||||||
Sbjct: 193417 tcaaaagagtccatgccagt 193398
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>dbj|AP006689.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT27F14, TM0387,
             complete sequence
          Length = 96031

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 608   atcaagaaagaccaaaaaat 627
             ||||||||||||||||||||
Sbjct: 52854 atcaagaaagaccaaaaaat 52835
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>gb|AC011332.8| Homo sapiens chromosome 5 clone CTC-222D7, complete sequence
          Length = 144820

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 150   gctgggtcagtctggatatgatgt 173
             ||||||| ||||||||||||||||
Sbjct: 77551 gctgggtaagtctggatatgatgt 77528
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>dbj|AB040926.1| Homo sapiens mRNA for KIAA1493 protein, partial cds
          Length = 4768

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 622 aaaaatggggatgggtatcg 641
           ||||||||||||||||||||
Sbjct: 415 aaaaatggggatgggtatcg 434


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,194,135
Number of Sequences: 3902068
Number of extensions: 6194135
Number of successful extensions: 128404
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 128245
Number of HSP's gapped (non-prelim): 159
length of query: 645
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 622
effective length of database: 17,143,297,704
effective search space: 10663131171888
effective search space used: 10663131171888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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