ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9p08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in ch... 30 3.8
2SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu... 29 8.4
3MTP1_ARATH (Q9ZT63) Metal tolerance protein 1 (AtMTP1) (Zinc tra... 29 8.4

>KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in chromosome X|
          Length = 462

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
 Frame = +3

Query: 396 HAHRHHPGRDSXXXXXXXXXXXXXEEHGQSHRDEAHHHG-EADEQV 530
           HAH HH    S             + HG SH D  H HG E+ +QV
Sbjct: 94  HAHDHHG--HSHDEEEDHHHGHAHDHHGHSHEDHGHSHGAESAKQV 137



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>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 13/45 (28%), Positives = 17/45 (37%)
 Frame = +3

Query: 390 RQHAHRHHPGRDSXXXXXXXXXXXXXEEHGQSHRDEAHHHGEADE 524
           R  AHRH   R+               +H Q+HR   H   E +E
Sbjct: 392 RHQAHRHRGHREEEDEDDDDEGDSTESDHHQAHRHRGHREEEDEE 436



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>MTP1_ARATH (Q9ZT63) Metal tolerance protein 1 (AtMTP1) (Zinc transporter|
           ZAT-1) (ZAT1p) [Contains: Metal tolerance protein 1
           short form]
          Length = 398

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
 Frame = +3

Query: 396 HAHRHHPGRDSXXXXXXXXXXXXXEEHGQSH---RDEAHHHGEADEQV 530
           H H HH    S              EHG SH    D+ H HG+  EQ+
Sbjct: 194 HGHDHH--NHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHAHGDVTEQL 239


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,012,601
Number of Sequences: 219361
Number of extensions: 850577
Number of successful extensions: 2482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2464
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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