ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9p05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TNR6_MOUSE (P25446) Tumor necrosis factor receptor superfamily m... 30 1.8
2PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior... 28 6.9
3CHEA_ENTAE (P21813) Chemotaxis protein cheA (EC 2.7.13.3) (Fragm... 28 9.0

>TNR6_MOUSE (P25446) Tumor necrosis factor receptor superfamily member 6|
           precursor (FASLG receptor) (Apoptosis-mediating surface
           antigen FAS) (Apo-1 antigen) (CD95 antigen)
          Length = 327

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 86  PTTEGKEYSTPNNPA--IRRCILCSE 157
           P TEGKEY   N+ A   RRC LC E
Sbjct: 80  PCTEGKEYMDKNHYADKCRRCTLCDE 105



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>PSC_DROME (P35820) Polycomb group protein Psc (Protein posterior sex combs)|
          Length = 1601

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 66  EQGLIMTLQQKGRNTVHLIIQPSGDAS 146
           E+  + T +Q+G +T HLI  PS D S
Sbjct: 346 EEAALATPEQRGDDTEHLIFSPSDDMS 372



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>CHEA_ENTAE (P21813) Chemotaxis protein cheA (EC 2.7.13.3) (Fragment)|
          Length = 226

 Score = 27.7 bits (60), Expect = 9.0
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 27  YKV*HWAGHNTSLEQGLIMTLQQKGRNTVHLIIQPSG 137
           Y+V   AG  T   QG+++ LQ  GR    L+ Q  G
Sbjct: 138 YRVFECAGAKTEATQGIVVILQSAGRRNALLVDQLIG 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,848,552
Number of Sequences: 219361
Number of extensions: 402411
Number of successful extensions: 1031
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1031
length of database: 80,573,946
effective HSP length: 28
effective length of database: 74,431,838
effective search space used: 1786364112
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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