ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16g03 |
|---|---|
| Clone Library Name | barley_pub |
>SYDC_YEAST (P04802) Aspartyl-tRNA synthetase, cytoplasmic (EC 6.1.1.12)| (Aspartate--tRNA ligase) (AspRS) Length = 556 Score = 74.7 bits (182), Expect = 2e-13 Identities = 53/157 (33%), Positives = 78/157 (49%), Gaps = 8/157 (5%) Frame = +2 Query: 107 ISKKQLKKDARKAEKAGKASXXXXXXXXXAEEADPFAA-------NYGDVPVEEIQSKVI 265 +SKK LKK ++ EK K E + AA NYG +P+ + + Sbjct: 28 LSKKALKKLQKEQEKQRKKEERALQLEAEREAREKKAAAEDTAKDNYGKLPLIQSRDSDR 87 Query: 266 SGRTWTDIGDLDEAA-AGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAG 442 +G+ DLDEA + + VL R R +AF+ LRQ S +Q ++ A+ + Sbjct: 88 TGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGT 147 Query: 443 VSTQMVRFATSLSKESIVDVEGIVTLPKEPLKATTQQ 553 +S MV++A SL+ ESIV V GIV EP+K+ T Q Sbjct: 148 ISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQ 184
>SYD_CAEEL (Q03577) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 531 Score = 67.4 bits (163), Expect = 3e-11 Identities = 51/154 (33%), Positives = 82/154 (53%), Gaps = 5/154 (3%) Frame = +2 Query: 107 ISKKQLKKDARKAEKAGKASXXXXXXXXXA-----EEADPFAANYGDVPVEEIQSKVISG 271 +SKK+L K ARKA+K KA A + + F +YG V +E KV++ Sbjct: 12 LSKKELNKLARKAKKDEKAGEKGGNQQQAAAMDQEDASKDFYGSYGLVNSKE--KKVLN- 68 Query: 272 RTWTDIGDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVST 451 + + +++ + A + V +RG T R K F+VLRQ + TVQ + + +S Sbjct: 69 --FLKVKEINVSNATKDVWVRGRIHTTRSKGKN-CFLVLRQGVYTVQVAMFMNEK--ISK 123 Query: 452 QMVRFATSLSKESIVDVEGIVTLPKEPLKATTQQ 553 QM++F +S+SKESIVDV + P+++ TQ+ Sbjct: 124 QMLKFVSSISKESIVDVYATINKVDNPIESCTQK 157
>SYD_RAT (P15178) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 501 Score = 58.5 bits (140), Expect = 1e-08 Identities = 39/102 (38%), Positives = 54/102 (52%) Frame = +2 Query: 248 IQSKVISGRTWTDIGDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVA 427 IQS+ R + DL A V +R T R K+ F+VLRQ VQ ++ Sbjct: 35 IQSQEKPDRVLVRVKDLTVQKADEVVWVRARVHTSRAKGKQ-CFLVLRQQQFNVQALVAV 93 Query: 428 SPDAGVSTQMVRFATSLSKESIVDVEGIVTLPKEPLKATTQQ 553 A S QMV+FA +++KESI+DVEGIV + + + TQQ Sbjct: 94 GDHA--SKQMVKFAANINKESIIDVEGIVRKVNQKIGSCTQQ 133
>SYD_HUMAN (P14868) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 501 Score = 58.2 bits (139), Expect = 2e-08 Identities = 39/102 (38%), Positives = 54/102 (52%) Frame = +2 Query: 248 IQSKVISGRTWTDIGDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVA 427 IQS+ R + DL A V +R T R K+ F+VLRQ VQ ++ Sbjct: 35 IQSQEKPDRVLVRVRDLTIQKADEVVWVRARVHTSRAKGKQ-CFLVLRQQQFNVQALVAV 93 Query: 428 SPDAGVSTQMVRFATSLSKESIVDVEGIVTLPKEPLKATTQQ 553 A S QMV+FA +++KESIVDVEG+V + + + TQQ Sbjct: 94 GDHA--SKQMVKFAANINKESIVDVEGVVRKVNQKIGSCTQQ 133
>SYD_MOUSE (Q922B2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 501 Score = 57.4 bits (137), Expect = 3e-08 Identities = 38/102 (37%), Positives = 54/102 (52%) Frame = +2 Query: 248 IQSKVISGRTWTDIGDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVA 427 IQS+ R + DL A V +R T R K+ F+VLRQ VQ ++ Sbjct: 35 IQSQEKPDRVLVRVKDLTVQKADDVVWVRARVHTSRAKGKQ-CFLVLRQQQFNVQALVAV 93 Query: 428 SPDAGVSTQMVRFATSLSKESIVDVEGIVTLPKEPLKATTQQ 553 A S QMV+FA +++KESI+DVEG+V + + + TQQ Sbjct: 94 GDHA--SKQMVKFAANINKESIIDVEGVVRKVNQKIGSCTQQ 133
>SYD_METMP (Q6LWU0) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 438 Score = 37.7 bits (86), Expect = 0.022 Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Frame = +2 Query: 314 GRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVSTQMVRFATSLSKESI 493 G+ V + G ++R + K +AFV+LR T+Q V+ P V + A L KE I Sbjct: 22 GQEVTLMGWVHSIRALGK-LAFVILRDRAGTIQAVV---PKQKVDEETFEIAKKLGKEDI 77 Query: 494 VDVEG-IVTLPKEP 532 V ++G +V K P Sbjct: 78 VAIKGKVVANEKAP 91
>SYD_UREPA (Q9PQK5) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 578 Score = 35.8 bits (81), Expect = 0.084 Identities = 24/81 (29%), Positives = 43/81 (53%) Frame = +2 Query: 290 GDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVSTQMVRFA 469 G + E ++V++ G + +R + + FV L+ VQ + A+ GV ++ Sbjct: 6 GYIGEEHLEKNVILNGWVKKVRKMGN-LVFVDLKDRFGIVQ--IFATKSDGVFNEL---- 58 Query: 470 TSLSKESIVDVEGIVTLPKEP 532 T LS+E +++VEG+V L K P Sbjct: 59 TQLSREDVINVEGLVLLRKNP 79
>SYD_BACHD (Q9KDG1) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 595 Score = 33.5 bits (75), Expect = 0.42 Identities = 24/81 (29%), Positives = 40/81 (49%) Frame = +2 Query: 290 GDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVSTQMVRFA 469 G L E V ++G Q R + + + FV LR VQ V ++ +S + + A Sbjct: 9 GQLSEEQVNERVQLKGWVQRRRDLGQ-VIFVDLRDRSGVVQLVF----NSDISQEALETA 63 Query: 470 TSLSKESIVDVEGIVTLPKEP 532 + E ++DVEG+V L ++P Sbjct: 64 EKVRNEYVLDVEGVV-LKRDP 83
>SYNC_YEAST (P38707) Asparaginyl-tRNA synthetase, cytoplasmic (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 554 Score = 33.1 bits (74), Expect = 0.54 Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +2 Query: 314 GRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVSTQMVRFATSLSKESI 493 G+ V + G LR +KK+ FVVLR +QCVL S D ++ Q + L+ ES Sbjct: 129 GQRVKVSGWIHRLRS-NKKVIFVVLRDGSGFIQCVL--SGDLALAQQTL----DLTLEST 181 Query: 494 VDVEG-IVTLPK 526 V + G IV LP+ Sbjct: 182 VTLYGTIVKLPE 193
>SYD_METJA (Q58950) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 438 Score = 32.3 bits (72), Expect = 0.93 Identities = 21/74 (28%), Positives = 36/74 (48%) Frame = +2 Query: 293 DLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVSTQMVRFAT 472 D+ G+ V+I G ++R + K + FV+LR TVQ + +P V ++ Sbjct: 15 DIKPEMDGQEVIIMGWVHSIRALGK-IIFVILRDREGTVQ---IVAPKQKVGDELFSQIK 70 Query: 473 SLSKESIVDVEGIV 514 L E ++ V+G V Sbjct: 71 KLGAEDVIAVKGKV 84
>SYD_THEVO (Q979P6) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 428 Score = 31.6 bits (70), Expect = 1.6 Identities = 22/74 (29%), Positives = 36/74 (48%) Frame = +2 Query: 287 IGDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVSTQMVRF 466 IG L E +V I G Q L+ + K ++F+++R TVQ +PD +V Sbjct: 6 IGSLRELNHNDNVEIYGWLQDLK-LLKNVSFLIMRDRTGTVQVTFKNTPD------IVNL 58 Query: 467 ATSLSKESIVDVEG 508 L +ES++ + G Sbjct: 59 LKELPRESVLKISG 72
>PTP3_ENCCU (Q8MTP3) Polar tube protein 3 precursor| Length = 1256 Score = 30.0 bits (66), Expect = 4.6 Identities = 19/80 (23%), Positives = 35/80 (43%) Frame = +2 Query: 116 KQLKKDARKAEKAGKASXXXXXXXXXAEEADPFAANYGDVPVEEIQSKVISGRTWTDIGD 295 ++++K+A KA+K + + A+ A + + + K + + GD Sbjct: 514 EEMQKEAVKAQKEANENSA-------VKSAEEHLAKAAEQQIINNEGKSVFSKVLESTGD 566 Query: 296 LDEAAAGRSVLIRGSAQTLR 355 + EAA R R A+TLR Sbjct: 567 ISEAAKAREEAERAMAETLR 586
>SYN_THEVO (Q979Y4) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 429 Score = 30.0 bits (66), Expect = 4.6 Identities = 25/81 (30%), Positives = 38/81 (46%) Frame = +2 Query: 302 EAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVSTQMVRFATSLS 481 EA G V +RG +R S + F+V+R S VQC + ++ + +SL Sbjct: 10 EAHVGSEVSVRGWVYRIRS-SGGVTFIVIRDSTGIVQCTAKKNE---LTPEQYDEISSLG 65 Query: 482 KESIVDVEGIVTLPKEPLKAT 544 ES + + G T+ KEP T Sbjct: 66 IESSLSLIG--TMKKEPRSPT 84
>VG72_ICHV1 (Q00103) Hypothetical gene 72 protein| Length = 1350 Score = 29.6 bits (65), Expect = 6.0 Identities = 14/45 (31%), Positives = 28/45 (62%) Frame = +2 Query: 230 DVPVEEIQSKVISGRTWTDIGDLDEAAAGRSVLIRGSAQTLRPVS 364 D+P++ + +++I+GR +GDL+ A R +I+ + + LR S Sbjct: 439 DLPID-LPNQIITGRVIESLGDLEGDIAARKEVIKKAVEALRVYS 482
>SYD_SULTO (Q976I3) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 429 Score = 29.6 bits (65), Expect = 6.0 Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Frame = +2 Query: 287 IGDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDA-GVSTQMVR 463 I D+ G+ V+ G LR + K F++LR Q V+ + A G+S + Sbjct: 7 IADVTPEYDGKEVIWAGWVHLLRDLGGKK-FIILRDKTGLGQVVVDKNSSAFGISQE--- 62 Query: 464 FATSLSKESIVDVEGIVTLPK 526 L++ES++ V GIV K Sbjct: 63 ----LTQESVIQVRGIVKADK 79
>HIS4_GEOKA (Q5KVC9) 1-(5-phosphoribosyl)-5-[(5-| phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (EC 5.3.1.16) (Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase) Length = 245 Score = 29.6 bits (65), Expect = 6.0 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = +2 Query: 224 YGDVPVEEIQSKVISGRTWTDIGDLDEAAAGRSVLIRGSAQTLRPVS 364 YGD PV + G W + DLD A GR V R + R +S Sbjct: 31 YGDSPVAMAEQFAAQGAEWIHMVDLDGAKEGRRVNDRFVIEAARRLS 77
>SYNC_HUMAN (O43776) Asparaginyl-tRNA synthetase, cytoplasmic (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 548 Score = 29.3 bits (64), Expect = 7.9 Identities = 25/73 (34%), Positives = 32/73 (43%) Frame = +2 Query: 302 EAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVSTQMVRFATSLS 481 E G+ V + G LR K + F+VLR +QCVL A Q LS Sbjct: 121 EGYRGQRVKVFGWVHRLRRQGKNLMFLVLRDGTGYLQCVL-----ADELCQCYN-GVLLS 174 Query: 482 KESIVDVEGIVTL 520 ES V V G++ L Sbjct: 175 TESSVAVYGMLNL 187
>SECA_GUITH (O78441) Preprotein translocase secA subunit| Length = 877 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +2 Query: 233 VPVEEIQSKVISGRTWTDIGDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVV 385 V V+E +++SGR W+D G A SV I+ QTL ++ + F++ Sbjct: 311 VIVDEFTGRIMSGRRWSD-GLHQAIEAKESVPIQSETQTLASITYQNFFLL 360
>CARB_METMA (P58944) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1073 Score = 29.3 bits (64), Expect = 7.9 Identities = 17/54 (31%), Positives = 26/54 (48%) Frame = +2 Query: 143 AEKAGKASXXXXXXXXXAEEADPFAANYGDVPVEEIQSKVISGRTWTDIGDLDE 304 AEK GK + PF + +P+ +I +KVI+G + D+G DE Sbjct: 824 AEKGGKV--FVLEANPRSSRTIPFVSKAVGIPLAKIAAKVIAGHSLKDLGYTDE 875
>SYD_STAES (Q8CS99) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 588 Score = 29.3 bits (64), Expect = 7.9 Identities = 24/79 (30%), Positives = 39/79 (49%) Frame = +2 Query: 281 TDIGDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVSTQMV 460 T G + E V ++G R + + FV LR VQ +V +PD S + + Sbjct: 6 TYCGLVTEEFLNEKVTLKGWVHNRRDLGG-LIFVDLRDREGIVQ--IVFNPD--FSEEAL 60 Query: 461 RFATSLSKESIVDVEGIVT 517 + A ++ E +V+VEG+VT Sbjct: 61 QVAETVRSEYVVEVEGVVT 79
>SYD_STAEQ (Q5HNS2) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA| ligase) (AspRS) Length = 588 Score = 29.3 bits (64), Expect = 7.9 Identities = 24/79 (30%), Positives = 39/79 (49%) Frame = +2 Query: 281 TDIGDLDEAAAGRSVLIRGSAQTLRPVSKKMAFVVLRQSMSTVQCVLVASPDAGVSTQMV 460 T G + E V ++G R + + FV LR VQ +V +PD S + + Sbjct: 6 TYCGLVTEEFLNEKVTLKGWVHNRRDLGG-LIFVDLRDREGIVQ--IVFNPD--FSEEAL 60 Query: 461 RFATSLSKESIVDVEGIVT 517 + A ++ E +V+VEG+VT Sbjct: 61 QVAETVRSEYVVEVEGVVT 79 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,953,976 Number of Sequences: 219361 Number of extensions: 548062 Number of successful extensions: 2330 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 2261 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2327 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4545742239 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
