ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags16f19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654) 29 2.7
2MK04_MOUSE (Q6P5G0) Mitogen-activated protein kinase 4 (EC 2.7.1... 28 4.6
3COBD_SALTY (P97084) Threonine-phosphate decarboxylase (EC 4.1.1.... 28 4.6
4POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocaps... 28 7.8
5TFG_HUMAN (Q92734) Protein TFG (TRK-fused gene protein) 28 7.8

>ZN142_HUMAN (P52746) Zinc finger protein 142 (HA4654)|
          Length = 1687

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 156  DGDENAGRPDLACPYC 203
            DGD +AG+P L CP+C
Sbjct: 1414 DGDGDAGQPPLHCPFC 1429



to top

>MK04_MOUSE (Q6P5G0) Mitogen-activated protein kinase 4 (EC 2.7.11.24)|
           (Extracellular signal-regulated kinase 4) (ERK-4)
          Length = 583

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 34  IYLSTPAWTRSTGS---RAWPPPSGSTQRSSATPIG 132
           ++L    W +ST S   RA PPP     R SA+P G
Sbjct: 485 LFLEIAQWVKSTQSGSERASPPPDAPEPRLSASPPG 520



to top

>COBD_SALTY (P97084) Threonine-phosphate decarboxylase (EC 4.1.1.81)|
           (L-threonine-O-3-phosphate decarboxylase)
          Length = 364

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 277 GAAWGSKGCSSSRWAIREATSW 212
           G A    GC   RW++REA  W
Sbjct: 112 GRALAQSGCEIRRWSLREADGW 133



to top

>POLS_RUBVM (P08563) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 992

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +1

Query: 46  TPAWTRSTGSRAWPPPSGSTQRSSATP 126
           T AW R   SRA PPP    +  S TP
Sbjct: 65  TGAWQRKDWSRAPPPPEERQESRSQTP 91



to top

>TFG_HUMAN (Q92734) Protein TFG (TRK-fused gene protein)|
          Length = 400

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 37  YLSTPAWTRSTGSRAWPPPSG-STQRSSATPIGRGWT 144
           Y   P +T   GS   PPPSG +    +  P G+G+T
Sbjct: 357 YQPRPGFTSLPGSTMTPPPSGPNPYARNRPPFGQGYT 393


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.131    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,331,695
Number of Sequences: 219361
Number of extensions: 428684
Number of successful extensions: 1402
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
to top