| Clone Name | bags16f16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 372 ccccttcgagagcgaacggct 392 ||||||||||||||||||||| Sbjct: 3328201 ccccttcgagagcgaacggct 3328221
>emb|AL445591.10| Human DNA sequence from clone RP11-314N2 on chromosome 1 Contains a novel processed pseudogene, the GJA8 gene for gap junction protein alpha 8, 50kDa (connexin 50) protein, the 5' end of the gene for putative G-protein coupled receptor (SH120) and a CpG island, complete sequence Length = 140092 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 116 gggattagtggaagcatattt 136 ||||||||||||||||||||| Sbjct: 47774 gggattagtggaagcatattt 47794
>emb|AM180252.1| Lawsonia intracellularis PHE/MN1-00 Length = 1457619 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 tgaaagcataaacgttggaaa 227 ||||||||||||||||||||| Sbjct: 566810 tgaaagcataaacgttggaaa 566790
>gb|AC166364.2| Mus musculus BAC clone RP24-394E6 from chromosome 3, complete sequence Length = 227070 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcccgctgactgggattagt 124 |||||||||||||||||||| Sbjct: 103152 gcccgctgactgggattagt 103171
>gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein gene, exons 1 through 64 and complete cds Length = 153745 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gtagctccgattcagcccct 376 |||||||||||||||||||| Sbjct: 67781 gtagctccgattcagcccct 67762
>gb|AC103605.8| Mus musculus chromosome 3, clone RP23-335H1, complete sequence Length = 222210 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcccgctgactgggattagt 124 |||||||||||||||||||| Sbjct: 81323 gcccgctgactgggattagt 81342
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ccacgtgggcccccatgtca 82 |||||||||||||||||||| Sbjct: 17015304 ccacgtgggcccccatgtca 17015323
>gb|AC120538.4| Oryza sativa chromosome 3 BAC OSJNBb0059G13 genomic sequence, complete sequence Length = 157662 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ccacgtgggcccccatgtca 82 |||||||||||||||||||| Sbjct: 46050 ccacgtgggcccccatgtca 46069
>emb|AJ632303.1| Sus scrofa partial ICAM3 gene, TYK2, CDC37, PDE4A, KEAP1, EDG8 and APG4D genes and partial FLJ12949 gene Length = 185331 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 gtagctccgattcagcccct 376 |||||||||||||||||||| Sbjct: 98852 gtagctccgattcagcccct 98871
>gb|BC026096.1| Homo sapiens glucuronyl C5-epimerase, mRNA (cDNA clone IMAGE:4295078), partial cds Length = 1239 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggctccttctcctttctcag 247 |||||||||||||||||||| Sbjct: 865 ggctccttctcctttctcag 884
>gb|AC006350.2| Homo sapiens PAC clone RP5-998H4 from 7, complete sequence Length = 96958 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 625 taacagaaatgcatgtgttc 644 |||||||||||||||||||| Sbjct: 4665 taacagaaatgcatgtgttc 4684
>gb|AC130801.16| Medicago truncatula clone mth2-12p19, complete sequence Length = 119328 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 659 aatgcacatgcgagagtgat 678 |||||||||||||||||||| Sbjct: 45574 aatgcacatgcgagagtgat 45593
>ref|XM_790854.1| PREDICTED: Strongylocentrotus purpuratus similar to CG2747-PB, isoform B (LOC591286), mRNA Length = 3468 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 645 atgatacttgttgtaatgcacatg 668 |||||||||||||||||| ||||| Sbjct: 3246 atgatacttgttgtaatgaacatg 3269
>emb|AL022146.1|HS780M13 Human DNA sequence from clone RP4-780M13 on chromosome 1q24-25 Contains the 5' end of the SELP gene for selectin P (granule membrane protein 140kDa, antigen CD62) and the 5' end of a variant of a novel gene (FLJ45155), complete sequence Length = 78025 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 634 tgcatgtgttcatgatactt 653 |||||||||||||||||||| Sbjct: 44701 tgcatgtgttcatgatactt 44720
>gb|AF542391.1| Homo sapiens selectin P (granule membrane protein 140kDa, antigen CD62) (SELP) gene, complete cds Length = 44381 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 634 tgcatgtgttcatgatactt 653 |||||||||||||||||||| Sbjct: 5697 tgcatgtgttcatgatactt 5716
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 243433 ggaagcatatttctaaatta 243452
>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7 Length = 347365 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 gctccgattcagccccttcg 379 |||||||||||||||||||| Sbjct: 89028 gctccgattcagccccttcg 89047
>dbj|AB192509.2| Sus scrofa genomic DNA, chromosome 7, BAC clone: L139G16, complete sequence Length = 157870 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 gtagctccgattcagcccct 376 |||||||||||||||||||| Sbjct: 41925 gtagctccgattcagcccct 41906
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 266723 ggaagcatatttctaaatta 266742
>gb|AC112184.2| Homo sapiens chromosome 5 clone RP11-168A11, complete sequence Length = 173346 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggctccttctcctttctcag 247 |||||||||||||||||||| Sbjct: 83354 ggctccttctcctttctcag 83373
>gb|AC026992.12| Homo sapiens chromosome 15, clone RP11-352D13, complete sequence Length = 177902 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggctccttctcctttctcag 247 |||||||||||||||||||| Sbjct: 100836 ggctccttctcctttctcag 100855
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 247666 ggaagcatatttctaaatta 247685
>gb|AC158676.12| Mus musculus 6 BAC RP23-146N13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 204560 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 447 cccaggttcacataaggatc 466 |||||||||||||||||||| Sbjct: 190370 cccaggttcacataaggatc 190389
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 213753 ggaagcatatttctaaatta 213772
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 268343 ggaagcatatttctaaatta 268362
>gb|AC012636.5|AC012636 Homo sapiens chromosome 5 clone CTD-2201I18, complete sequence Length = 175561 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggctccttctcctttctcag 247 |||||||||||||||||||| Sbjct: 2231 ggctccttctcctttctcag 2250
>gb|AY033081.1| Staphylococcus aureus putative fatty acid degradation operon, complete sequence Length = 10173 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 9677 ggaagcatatttctaaatta 9658
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 ccacgtgggcccccatgtca 82 |||||||||||||||||||| Sbjct: 17008873 ccacgtgggcccccatgtca 17008892
>gb|AC093159.3| Homo sapiens BAC clone RP11-642D6 from 2, complete sequence Length = 186561 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 gcttttggttactgaaagca 214 |||||||||||||||||||| Sbjct: 91561 gcttttggttactgaaagca 91542
>dbj|AB158555.1| Staphylococcus aureus genes for hypothetical proteins, staphylocoagulase, acetyl-CoA acetyltransferase homologue, complete cds, strain:19 Length = 6164 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 4508 ggaagcatatttctaaatta 4527
>dbj|AB158553.1| Staphylococcus aureus genes for hypothetical proteins, staphylocoagulase, acetyl-CoA acetyltransferase homologue, complete cds, strain:Ku Length = 6510 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 4852 ggaagcatatttctaaatta 4871
>dbj|AB158552.1| Staphylococcus aureus genes for hypothetical proteins, staphylocoagulase, acetyl-CoA acetyltransferase homologue, complete cds, strain:Stp-12 Length = 6221 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 4561 ggaagcatatttctaaatta 4580
>dbj|AB158550.1| Staphylococcus aureus genes for hypothetical proteins, staphylocoagulase, acetyl-CoA acetyltransferase homologue, complete cds, strain:Stp-28 Length = 6224 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 4564 ggaagcatatttctaaatta 4583
>dbj|AB158549.1| Staphylococcus aureus genes for hypothetical proteins, staphylocoagulase, acetyl-CoA acetyltransferase homologue, complete cds, strain:104 Length = 6289 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 4633 ggaagcatatttctaaatta 4652
>gb|AC025591.8| Staphylococcus aureus clone sabac-134, complete sequence Length = 58431 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 56268 ggaagcatatttctaaatta 56287
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 244733 ggaagcatatttctaaatta 244752
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 266763 ggaagcatatttctaaatta 266782
>emb|X16457.1|SASTPHLC Staphylococcus aureus gene for staphylocoagulase Length = 2906 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 2181 ggaagcatatttctaaatta 2200
>emb|CT025895.11| Zebrafish DNA sequence from clone DKEY-273E13 in linkage group 13, complete sequence Length = 56618 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 648 atacttgttgtaatgcacat 667 |||||||||||||||||||| Sbjct: 29793 atacttgttgtaatgcacat 29774
>ref|NM_015554.1| Homo sapiens glucuronyl C5-epimerase (GLCE), mRNA Length = 5043 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggctccttctcctttctcag 247 |||||||||||||||||||| Sbjct: 4699 ggctccttctcctttctcag 4718
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 260326 ggaagcatatttctaaatta 260345
>gb|AC104327.6| Mus musculus strain C57BL/6J clone rp23-295a4 map 3, complete sequence Length = 193174 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 105 gcccgctgactgggattagt 124 |||||||||||||||||||| Sbjct: 93473 gcccgctgactgggattagt 93492
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggaagcatatttctaaatta 144 |||||||||||||||||||| Sbjct: 211123 ggaagcatatttctaaatta 211142
>dbj|AB020643.1| Homo sapiens mRNA for KIAA0836 protein, partial cds Length = 4791 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ggctccttctcctttctcag 247 |||||||||||||||||||| Sbjct: 4447 ggctccttctcctttctcag 4466 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 9,155,561 Number of Sequences: 3902068 Number of extensions: 9155561 Number of successful extensions: 119477 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119075 Number of HSP's gapped (non-prelim): 402 length of query: 682 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 659 effective length of database: 17,143,297,704 effective search space: 11297433186936 effective search space used: 11297433186936 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)