ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags16f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CTND1_XENLA (Q8AXM9) Catenin delta-1 (p120 catenin) (p120(ctn)) ... 31 0.68
2RFP2_HUMAN (O60858) Ret finger protein 2 (Leukemia-associated pr... 30 1.2
3NADD_ANASP (Q8YM77) Probable nicotinate-nucleotide adenylyltrans... 29 2.6
4NU120_YEAST (P35729) Nucleoporin NUP120 (Nuclear pore protein NU... 28 7.5
5MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-pro... 28 7.5

>CTND1_XENLA (Q8AXM9) Catenin delta-1 (p120 catenin) (p120(ctn)) (Xp120(ctn))|
          Length = 859

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 83  LWVESIDPPLASVSAVRNKELHKNTLYTTVKVQARSVTVEE 205
           +WV   +PPLA+ S  R ++     LYT  +++A SV  +E
Sbjct: 44  VWVTPQEPPLANGSLTRRQQDGLPFLYTPTRMEAHSVHADE 84



to top

>RFP2_HUMAN (O60858) Ret finger protein 2 (Leukemia-associated protein 5)|
           (B-cell chronic lymphocytic leukemia tumor suppressor
           Leu5) (Putative tumor suppressor RFP2) (Tripartite motif
           protein 13) (RING finger protein 77)
          Length = 407

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
 Frame = -2

Query: 328 Y*KFRSSPWLPVCR-------YLECRTELKLVMGVCFTDG 230
           Y K + SP +PVC+        + C T+++L+ G+C T G
Sbjct: 82  YNKIKISPKMPVCKGHLGQPLNIFCLTDMQLICGICATRG 121



to top

>NADD_ANASP (Q8YM77) Probable nicotinate-nucleotide adenylyltransferase (EC|
           2.7.7.18) (Deamido-NAD(+) pyrophosphorylase)
           (Deamido-NAD(+) diphosphorylase) (Nicotinate
           mononucleotide adenylyltransferase) (NaMN
           adenylyltransferase)
          Length = 208

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)
 Frame = +2

Query: 83  LWVESIDPPLASVSAVRNK------ELHKNTLYTTVKVQARSVTVEEA*LCIASSSVCKT 244
           +WV S++PP    SA R++          N  +T   V+     V  A   +   SVC  
Sbjct: 35  IWVPSLNPPHKKASAFRHRLAMLQLATQDNPAFTVSSVEKNRSGVSYAINTLTDLSVCFP 94

Query: 245 NSH 253
           N+H
Sbjct: 95  NTH 97



to top

>NU120_YEAST (P35729) Nucleoporin NUP120 (Nuclear pore protein NUP120)|
          Length = 1037

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 240 LQTELEAMQS---HASSTVTDLACTFTVVYR 157
           L T LE ++S   H  S   DL CTFTV YR
Sbjct: 790 LPTFLEDLKSENYHGDSIWKDLLCTFTVPYR 820



to top

>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3|
           (EC 2.7.11.1)
          Length = 1309

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 228 VPSVKQTPMTSFSSVLHSRYRHTGSHGDDRN 320
           VP ++    TS+      RYRH GS  D+ N
Sbjct: 656 VPQLEAEDDTSYFDTRSERYRHLGSEDDETN 686


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,125,972
Number of Sequences: 219361
Number of extensions: 650092
Number of successful extensions: 1599
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1599
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top