ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9p03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 4.2
2R1B19_SOLDE (Q6L406) Putative late blight resistance protein hom... 30 4.2
3STC2_RAT (Q9R0K8) Stanniocalcin-2 precursor (STC-2) 30 7.1
4NINAC_DROME (P10676) Neither inactivation nor afterpotential pro... 30 7.1
5ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disinteg... 29 9.3

>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 182 RAFLSRWRRSWGSPPCSARRSGCSCRGCGKPNKPTYT 292
           +AF +R R   G  PC      CSC  C  P   T T
Sbjct: 149 KAFENRQRSHTGQRPCKECGQACSCLSCQSPPMKTQT 185



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>R1B19_SOLDE (Q6L406) Putative late blight resistance protein homolog R1B-19|
          Length = 1582

 Score = 30.4 bits (67), Expect = 4.2
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = -3

Query: 590  GIDSLSVDMATRKMTVIGMVDPVDVVS--KLRKAWSASI 480
            GI+S+S D   +K+TV G VD    +S  +  KAW A +
Sbjct: 1385 GIESVSTDRKEKKLTVTGDVDAGSSISCGETEKAWHARV 1423



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>STC2_RAT (Q9R0K8) Stanniocalcin-2 precursor (STC-2)|
          Length = 296

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 196 AEKCTA*LCRVRMEQRRCLLSFDVYAVSVQNAVMRKEDIHVENFVVWENY 47
           + KC A    V   QR C L  D+ + + +N V+  E IH ++ ++ E Y
Sbjct: 122 SRKCPAIREMVYQLQRECYLKHDLCSAAQENVVVIVEMIHFKDLLLHEPY 171



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>NINAC_DROME (P10676) Neither inactivation nor afterpotential protein C (EC|
            2.7.11.1)
          Length = 1501

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 335  PPQPTEQQLAELMNQYRSAYSAYHNPYMNNHYVVQSMEENPNS 207
            P Q    Q+   MN Y +AY++Y++ Y N ++ V       NS
Sbjct: 1278 PQQLRRNQMQMNMNAYNNAYNSYNSNYNNQNWGVHRSGSRRNS 1320



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>ADA20_HUMAN (O43506) ADAM 20 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 20)
          Length = 726

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -1

Query: 142 LLSFDVYAVSVQNAVMRKEDIHVENFVVWENYNLNN 35
           L   D++  S         D  +E+F +W+NYNLNN
Sbjct: 254 LTGIDIWTASNPLPTSGDLDNVLEDFSIWKNYNLNN 289


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,880,553
Number of Sequences: 219361
Number of extensions: 1014034
Number of successful extensions: 3357
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3352
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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