Clone Information

BLAST Search Result

Clone Name	bags16e18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK099970.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	323	3e-85
2	dbj\|AK068717.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	323	3e-85
3	gb\|AY109821.1\| Zea mays CL36095_1 mRNA sequence	260	4e-66
4	gb\|AC135956.6\| Oryza sativa (japonica cultivar-group) chromosome...	155	2e-34
5	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	155	2e-34
6	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	155	2e-34
7	emb\|CR391994.10\| Zebrafish DNA sequence from clone DKEY-239B22, ...	46	0.10
8	emb\|CR339063.8\| Zebrafish DNA sequence from clone CH211-247J10 i...	46	0.10
9	emb\|AL928723.5\| Zebrafish DNA sequence from clone DKEY-252I9 in ...	46	0.10
10	emb\|BX004994.6\| Zebrafish DNA sequence from clone DKEY-24J15 in ...	46	0.10
11	gb\|AC131921.9\| Mus musculus chromosome 12, clone RP24-231P11, co...	44	0.40
12	emb\|AL160155.19\| Human DNA sequence from clone RP11-461N23 on ch...	44	0.40
13	gb\|AC099525.5\| Papio anubis clone RP41-277O17, complete sequence	44	0.40
14	gb\|AC078863.15\|AC078863 Mus musculus BAC RP23-406N7 (Roswell Pa...	44	0.40
15	emb\|AL929186.7\| Mouse DNA sequence from clone RP23-399K8 on chro...	44	0.40
16	ref\|XM_762032.1\| Giardia lamblia ATCC 50803 heat shock protein 7...	42	1.6
17	gb\|AC142334.1\| Pan troglodytes BAC clone RP43-34J11 from 7, comp...	42	1.6
18	emb\|BX571885.7\| Mouse DNA sequence from clone RP23-17O21 on chro...	42	1.6
19	gb\|AF274582.1\|AF274582 Giardia intestinalis heat shock protein 7...	42	1.6
20	gb\|AC166329.3\| Pan troglodytes BAC clone CH251-143I6 from chromo...	42	1.6
21	dbj\|AB067649.1\| Giardia intestinalis dnaK mRNA for mitochondrial...	42	1.6
22	dbj\|AB056659.1\| Giardia intestinalis gene for mitochondrial type...	42	1.6
23	ref\|XM_474256.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.3
24	gb\|BC072662.1\| Mus musculus cDNA clone IMAGE:30543871, partial cds	40	6.3
25	gb\|AC165177.2\| Zea mays clone ZMMBBb-188L18, complete sequence	40	6.3
26	gb\|AC012626.10\| Homo sapiens chromosome 16 clone CTD-2118O12, co...	40	6.3
27	emb\|AJ853849.1\| Sus scrofa PRSS11 gene (partial), DMBT1 gene, AW...	40	6.3
28	gb\|AC121968.3\| Mus musculus BAC clone RP24-272N4 from chromosome...	40	6.3
29	emb\|AL512633.6\| Human DNA sequence from clone RP11-198M15 on chr...	40	6.3
30	emb\|AL137784.14\| Human DNA sequence from clone RP1-199J3 on chro...	40	6.3
31	emb\|AL008637.1\|HS833B7 Human DNA sequence from clone CTA-833B7 o...	40	6.3
32	gb\|AC104449.3\| Homo sapiens chromosome 3 clone RP11-460N16, comp...	40	6.3
33	gb\|AC161351.3\| Mus musculus chromosome 15, clone RP24-142I15, co...	40	6.3
34	ref\|NM_001016968.2\| Xenopus tropicalis golgi associated, gamma a...	40	6.3
35	emb\|AL606646.3\|OSJN00091 Oryza sativa genomic DNA, chromosome 4,...	40	6.3
36	gb\|AC130650.2\| Homo sapiens chromosome 16 clone CTA-276F8, compl...	40	6.3
37	gb\|AC108050.5\| Homo sapiens BAC clone RP11-331M18 from 4, comple...	40	6.3
38	gb\|AC104639.3\| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Can...	40	6.3
39	gb\|AC103922.2\| Homo sapiens chromosome 3 clone RP11-226E22, comp...	40	6.3
40	gb\|AC165267.2\| Zea mays clone ZMMBBb-151F20, complete sequence	40	6.3
41	gb\|AC026473.7\| Homo sapiens chromosome 16 clone RP11-51O6, compl...	40	6.3
42	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
43	gb\|AC138070.3\| Homo sapiens chromosome 3 clone RP11-263E3, compl...	40	6.3
44	gb\|U91322.1\|HSU91322 Human chromosome 16p13 BAC clone CIT987SK-2...	40	6.3
45	emb\|CR848466.2\| Xenopus tropicalis finished cDNA, clone TEgg087a14	40	6.3
46	dbj\|AB009608.1\| Homo sapiens MITF gene for microphthalmia-associ...	40	6.3
47	emb\|AL663091.13\| Mouse DNA sequence from clone RP23-392P11 on ch...	40	6.3
48	gb\|AC138594.10\| Mus musculus chromosome 7, clone RP24-283N22, co...	40	6.3

>dbj|AK099970.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013127L17, full
            insert sequence
          Length = 1439

 Score =  323 bits (163), Expect = 3e-85
 Identities = 307/355 (86%)
 Strand = Plus / Plus

                                                                        
Query: 6    aagttatgaaagttggaaggagaatgggcccccaggtggatataattacatcccgcggga 65
            ||||||||||  ||||| ||||||||| || |||||||||||||||||  |||| |||||
Sbjct: 746  aagttatgaagcttggagggagaatggccctccaggtggatataattatgtcccacggga 805

                                                                        
Query: 66   tgactggtattggcagacagatacgcctaactcggaaaataaaaataggcggacatatac 125
             |||||||| ||||||||||||||  |  |||||||| ||||||||||||||||||||||
Sbjct: 806  cgactggtactggcagacagatacatcacactcggaacataaaaataggcggacatatac 865

                                                                        
Query: 126  tccggcaggacctaggggttaccctatgtcacatcattacaccgttcttggtcttgatag 185
            ||| |||||||||||||  ||  ||||||||||||| || || || ||||||||  ||||
Sbjct: 866  tcctgcaggacctagggtgtattctatgtcacatcactatacagtccttggtctcaatag 925

                                                                        
Query: 186  atcacgagggactccatacacagatgcagaagtaaagagtgcttttagaacaaaagcaat 245
             |||||    || |||||||| || |||||||| |||| |||||||||||||||||||||
Sbjct: 926  gtcacggacaacaccatacaccgacgcagaagtcaagaatgcttttagaacaaaagcaat 985

                                                                        
Query: 246  ggaggtccaccctgaccaaaatcaagataatagagagactgctgaagaagagttcaagga 305
            |||||| |||||||| ||||||||||||||||||||| |||| |||||   ||| |||||
Sbjct: 986  ggaggttcaccctgatcaaaatcaagataatagagaggctgcagaagagaggtttaagga 1045

                                                                   
Query: 306  ggttgtcaaatcttacgaggcaataaaactggagaggaaaaataatgcaagttga 360
            |||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 1046 ggttgtcaaatcatacgaagcaataaaactggagagaaaaaatgatgcaagttga 1100

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>dbj|AK068717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163H12, full
            insert sequence
          Length = 1528

 Score =  323 bits (163), Expect = 3e-85
 Identities = 307/355 (86%)
 Strand = Plus / Plus

                                                                        
Query: 6    aagttatgaaagttggaaggagaatgggcccccaggtggatataattacatcccgcggga 65
            ||||||||||  ||||| ||||||||| || |||||||||||||||||  |||| |||||
Sbjct: 782  aagttatgaagcttggagggagaatggccctccaggtggatataattatgtcccacggga 841

                                                                        
Query: 66   tgactggtattggcagacagatacgcctaactcggaaaataaaaataggcggacatatac 125
             |||||||| ||||||||||||||  |  |||||||| ||||||||||||||||||||||
Sbjct: 842  cgactggtactggcagacagatacatcacactcggaacataaaaataggcggacatatac 901

                                                                        
Query: 126  tccggcaggacctaggggttaccctatgtcacatcattacaccgttcttggtcttgatag 185
            ||| |||||||||||||  ||  ||||||||||||| || || || ||||||||  ||||
Sbjct: 902  tcctgcaggacctagggtgtattctatgtcacatcactatacagtccttggtctcaatag 961

                                                                        
Query: 186  atcacgagggactccatacacagatgcagaagtaaagagtgcttttagaacaaaagcaat 245
             |||||    || |||||||| || |||||||| |||| |||||||||||||||||||||
Sbjct: 962  gtcacggacaacaccatacaccgacgcagaagtcaagaatgcttttagaacaaaagcaat 1021

                                                                        
Query: 246  ggaggtccaccctgaccaaaatcaagataatagagagactgctgaagaagagttcaagga 305
            |||||| |||||||| ||||||||||||||||||||| |||| |||||   ||| |||||
Sbjct: 1022 ggaggttcaccctgatcaaaatcaagataatagagaggctgcagaagagaggtttaagga 1081

                                                                   
Query: 306  ggttgtcaaatcttacgaggcaataaaactggagaggaaaaataatgcaagttga 360
            |||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 1082 ggttgtcaaatcatacgaagcaataaaactggagagaaaaaatgatgcaagttga 1136

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>gb|AY109821.1| Zea mays CL36095_1 mRNA sequence
          Length = 490

 Score =  260 bits (131), Expect = 4e-66
 Identities = 273/322 (84%)
 Strand = Plus / Plus

                                                                       
Query: 8   gttatgaaagttggaaggagaatgggcccccaggtggatataattacatcccgcgggatg 67
           |||||||||| |||| ||||||||| || || ||||| || ||||||||||| |||||||
Sbjct: 100 gttatgaaagctggagggagaatggccctcctggtggctacaattacatccctcgggatg 159

                                                                       
Query: 68  actggtattggcagacagatacgcctaactcggaaaataaaaataggcggacatatactc 127
           | |||||||||||||| |||||  || |||| ||| ||     ||||||||| || || |
Sbjct: 160 attggtattggcagactgatacttctcactcagaacatnnnnntaggcggacgtacacgc 219

                                                                       
Query: 128 cggcaggacctaggggttaccctatgtcacatcattacaccgttcttggtcttgatagat 187
           ||||||||||||||| ||| |||||||| ||||| ||  | ||||| |||||||| ||||
Sbjct: 220 cggcaggacctagggtttatcctatgtcccatcactatgcagttctaggtcttgacagat 279

                                                                       
Query: 188 cacgagggactccatacacagatgcagaagtaaagagtgcttttagaacaaaagcaatgg 247
           |||||| ||| ||||| |||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 280 cacgagcgacaccatatacagatgcagaagtgaagactgcttttagaacaaaagcaatgg 339

                                                                       
Query: 248 aggtccaccctgaccaaaatcaagataatagagagactgctgaagaagagttcaaggagg 307
           | || || ||||||||||||||| || |||||||  |||| |||||  ||||||||||||
Sbjct: 340 aagtgcatcctgaccaaaatcaaaatgatagagatgctgcagaagagaagttcaaggagg 399

                                 
Query: 308 ttgtcaaatcttacgaggcaat 329
           ||||||| |||||||| |||||
Sbjct: 400 ttgtcaagtcttacgaagcaat 421

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>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005H20, complete sequence
          Length = 135560

 Score =  155 bits (78), Expect = 2e-34
 Identities = 150/174 (86%)
 Strand = Plus / Minus

                                                                         
Query: 6     aagttatgaaagttggaaggagaatgggcccccaggtggatataattacatcccgcggga 65
             ||||||||||  ||||| ||||||||| || |||||||||||||||||  |||| |||||
Sbjct: 52504 aagttatgaagcttggagggagaatggccctccaggtggatataattatgtcccacggga 52445

                                                                         
Query: 66    tgactggtattggcagacagatacgcctaactcggaaaataaaaataggcggacatatac 125
              |||||||| ||||||||||||||  |  |||||||| ||||||||||||||||||||||
Sbjct: 52444 cgactggtactggcagacagatacatcacactcggaacataaaaataggcggacatatac 52385

                                                                   
Query: 126   tccggcaggacctaggggttaccctatgtcacatcattacaccgttcttggtct 179
             ||| |||||||||||||  ||  ||||||||||||| || || || ||||||||
Sbjct: 52384 tcctgcaggacctagggtgtattctatgtcacatcactatacagtccttggtct 52331



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Minus

                                                                     
Query: 225   tgcttttagaacaaaagcaatggaggtccaccctgaccaaaatcaagataatagag 280
             ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 50338 tgcttttagaacaaaagcaatggaggttcaccctgatcaaaatcaagataatagag 50283



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Minus

                                                                         
Query: 301   aaggaggttgtcaaatcttacgaggcaataaaactggagaggaaaaataatgcaagttga 360
             ||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 50163 aaggaggttgtcaaatcatacgaagcaataaaactggagagaaaaaatgatgcaagttga 50104

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  155 bits (78), Expect = 2e-34
 Identities = 150/174 (86%)
 Strand = Plus / Plus

                                                                            
Query: 6        aagttatgaaagttggaaggagaatgggcccccaggtggatataattacatcccgcggga 65
                ||||||||||  ||||| ||||||||| || |||||||||||||||||  |||| |||||
Sbjct: 29433466 aagttatgaagcttggagggagaatggccctccaggtggatataattatgtcccacggga 29433525

                                                                            
Query: 66       tgactggtattggcagacagatacgcctaactcggaaaataaaaataggcggacatatac 125
                 |||||||| ||||||||||||||  |  |||||||| ||||||||||||||||||||||
Sbjct: 29433526 cgactggtactggcagacagatacatcacactcggaacataaaaataggcggacatatac 29433585

                                                                      
Query: 126      tccggcaggacctaggggttaccctatgtcacatcattacaccgttcttggtct 179
                ||| |||||||||||||  ||  ||||||||||||| || || || ||||||||
Sbjct: 29433586 tcctgcaggacctagggtgtattctatgtcacatcactatacagtccttggtct 29433639



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Plus

                                                                        
Query: 225      tgcttttagaacaaaagcaatggaggtccaccctgaccaaaatcaagataatagag 280
                ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 29435632 tgcttttagaacaaaagcaatggaggttcaccctgatcaaaatcaagataatagag 29435687



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                            
Query: 301      aaggaggttgtcaaatcttacgaggcaataaaactggagaggaaaaataatgcaagttga 360
                ||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 29435807 aaggaggttgtcaaatcatacgaagcaataaaactggagagaaaaaatgatgcaagttga 29435866

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  155 bits (78), Expect = 2e-34
 Identities = 150/174 (86%)
 Strand = Plus / Plus

                                                                            
Query: 6        aagttatgaaagttggaaggagaatgggcccccaggtggatataattacatcccgcggga 65
                ||||||||||  ||||| ||||||||| || |||||||||||||||||  |||| |||||
Sbjct: 29524888 aagttatgaagcttggagggagaatggccctccaggtggatataattatgtcccacggga 29524947

                                                                            
Query: 66       tgactggtattggcagacagatacgcctaactcggaaaataaaaataggcggacatatac 125
                 |||||||| ||||||||||||||  |  |||||||| ||||||||||||||||||||||
Sbjct: 29524948 cgactggtactggcagacagatacatcacactcggaacataaaaataggcggacatatac 29525007

                                                                      
Query: 126      tccggcaggacctaggggttaccctatgtcacatcattacaccgttcttggtct 179
                ||| |||||||||||||  ||  ||||||||||||| || || || ||||||||
Sbjct: 29525008 tcctgcaggacctagggtgtattctatgtcacatcactatacagtccttggtct 29525061



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 54/56 (96%)
 Strand = Plus / Plus

                                                                        
Query: 225      tgcttttagaacaaaagcaatggaggtccaccctgaccaaaatcaagataatagag 280
                ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct: 29527054 tgcttttagaacaaaagcaatggaggttcaccctgatcaaaatcaagataatagag 29527109



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 56/60 (93%)
 Strand = Plus / Plus

                                                                            
Query: 301      aaggaggttgtcaaatcttacgaggcaataaaactggagaggaaaaataatgcaagttga 360
                ||||||||||||||||| ||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 29527229 aaggaggttgtcaaatcatacgaagcaataaaactggagagaaaaaatgatgcaagttga 29527288

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>emb|CR391994.10| Zebrafish DNA sequence from clone DKEY-239B22, complete sequence
          Length = 157765

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 243   aatggaggtccaccctgaccaaa 265
             |||||||||||||||||||||||
Sbjct: 99624 aatggaggtccaccctgaccaaa 99646

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>emb|CR339063.8| Zebrafish DNA sequence from clone CH211-247J10 in linkage group 20,
              complete sequence
          Length = 176083

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 243    aatggaggtccaccctgaccaaa 265
              |||||||||||||||||||||||
Sbjct: 167630 aatggaggtccaccctgaccaaa 167608

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>emb|AL928723.5| Zebrafish DNA sequence from clone DKEY-252I9 in linkage group 17,
              complete sequence
          Length = 211720

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 243    aatggaggtccaccctgaccaaa 265
              |||||||||||||||||||||||
Sbjct: 119126 aatggaggtccaccctgaccaaa 119148

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>emb|BX004994.6| Zebrafish DNA sequence from clone DKEY-24J15 in linkage group 22,
              complete sequence
          Length = 211945

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 243    aatggaggtccaccctgaccaaa 265
              |||||||||||||||||||||||
Sbjct: 141026 aatggaggtccaccctgaccaaa 141004

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>gb|AC131921.9| Mus musculus chromosome 12, clone RP24-231P11, complete sequence
          Length = 163117

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 289   gaagaagagttcaaggaggttg 310
             ||||||||||||||||||||||
Sbjct: 66166 gaagaagagttcaaggaggttg 66145

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>emb|AL160155.19| Human DNA sequence from clone RP11-461N23 on chromosome 13 Contains
             part of a novel gene (FLJ30001), a H2A histone family,
             pseudogene, the GPR18 gene for G protein-coupled receptor
             18, the EBI2 gene for Epstein-Barr virus induced gene 2
             (lymphocyte-specific G protein-coupled receptor), two
             novel genes and a CpG island, complete sequence
          Length = 149478

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 428   agcaggccatgccatcaggtgg 449
             ||||||||||||||||||||||
Sbjct: 57459 agcaggccatgccatcaggtgg 57438

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>gb|AC099525.5| Papio anubis clone RP41-277O17, complete sequence
          Length = 163567

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 283   actgctgaagaagagttcaagg 304
             ||||||||||||||||||||||
Sbjct: 82039 actgctgaagaagagttcaagg 82018

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>gb|AC078863.15|AC078863 Mus musculus  BAC RP23-406N7 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 188008

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 322    gaggcaataaaactggagagga 343
              ||||||||||||||||||||||
Sbjct: 173228 gaggcaataaaactggagagga 173249

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>emb|AL929186.7| Mouse DNA sequence from clone RP23-399K8 on chromosome 2, complete
             sequence
          Length = 198573

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 322   gaggcaataaaactggagagga 343
             ||||||||||||||||||||||
Sbjct: 34018 gaggcaataaaactggagagga 33997

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>ref|XM_762032.1| Giardia lamblia ATCC 50803 heat shock protein 70 (hsp70) partial
           mRNA
          Length = 1923

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 204 cacagatgcagaagtaaagagtgct 228
           ||||||||||||||||||| |||||
Sbjct: 252 cacagatgcagaagtaaagcgtgct 276

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>gb|AC142334.1| Pan troglodytes BAC clone RP43-34J11 from 7, complete sequence
          Length = 168008

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   tacacagatgcagaagtaaag 222
             |||||||||||||||||||||
Sbjct: 10744 tacacagatgcagaagtaaag 10724

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>emb|BX571885.7| Mouse DNA sequence from clone RP23-17O21 on chromosome 4 Contains a
             glyceraldehyde-3-phosphate dehydrogenase (Gapd)
             pseudogene, a novel gene and the 3' end of a novel gene,
             complete sequence
          Length = 218922

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 253   caccctgaccaaaatcaagat 273
             |||||||||||||||||||||
Sbjct: 91560 caccctgaccaaaatcaagat 91540

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>gb|AF274582.1|AF274582 Giardia intestinalis heat shock protein 70 gene, complete cds
          Length = 2037

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 204 cacagatgcagaagtaaagagtgct 228
           ||||||||||||||||||| |||||
Sbjct: 312 cacagatgcagaagtaaagcgtgct 336

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>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete
              sequence
          Length = 173896

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 203    acacagatgcagaagtaaaga 223
              |||||||||||||||||||||
Sbjct: 135692 acacagatgcagaagtaaaga 135672

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>dbj|AB067649.1| Giardia intestinalis dnaK mRNA for mitochondrial type 70kDa heat
           shock protein, complete cds
          Length = 1934

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 204 cacagatgcagaagtaaagagtgct 228
           ||||||||||||||||||| |||||
Sbjct: 259 cacagatgcagaagtaaagcgtgct 283

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>dbj|AB056659.1| Giardia intestinalis gene for mitochondrial type heat shock protein
            70, complete cds
          Length = 4426

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 204  cacagatgcagaagtaaagagtgct 228
            ||||||||||||||||||| |||||
Sbjct: 1402 cacagatgcagaagtaaagcgtgct 1426

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>ref|XM_474256.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 885

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 gaagagttcaaggaggttgt 311
           ||||||||||||||||||||
Sbjct: 595 gaagagttcaaggaggttgt 614

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>gb|BC072662.1| Mus musculus cDNA clone IMAGE:30543871, partial cds
          Length = 5401

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  gtggatgacaaacaaaaaat 465
            ||||||||||||||||||||
Sbjct: 2231 gtggatgacaaacaaaaaat 2212

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>gb|AC165177.2| Zea mays clone ZMMBBb-188L18, complete sequence
          Length = 137852

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   accaaaatcaagataataga 279
             ||||||||||||||||||||
Sbjct: 20985 accaaaatcaagataataga 20966

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>gb|AC012626.10| Homo sapiens chromosome 16 clone CTD-2118O12, complete sequence
          Length = 149370

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    agagtgcttttagaacaaaa 240
              ||||||||||||||||||||
Sbjct: 134807 agagtgcttttagaacaaaa 134826

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>emb|AJ853849.1| Sus scrofa PRSS11 gene (partial), DMBT1 gene, AWN gene, AQN-1 gene,
              PSP-II gene, PSP-I gene, AQN-3 gene and C10ORF120 gene
          Length = 270148

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    ataaaactggagaggaaaaa 347
              ||||||||||||||||||||
Sbjct: 188590 ataaaactggagaggaaaaa 188609

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>gb|AC121968.3| Mus musculus BAC clone RP24-272N4 from chromosome 6, complete sequence
          Length = 193207

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    gaaagttggaaggagaatgg 32
             ||||||||||||||||||||
Sbjct: 46141 gaaagttggaaggagaatgg 46122

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>emb|AL512633.6| Human DNA sequence from clone RP11-198M15 on chromosome X Contains a
             novel pseudogene (HSPC177), complete sequence
          Length = 41356

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 260   accaaaatcaagataataga 279
             ||||||||||||||||||||
Sbjct: 19962 accaaaatcaagataataga 19943

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>emb|AL137784.14| Human DNA sequence from clone RP1-199J3 on chromosome 6 Contains the 5'
             end of the USP45 gene for ubiquitin specific protease 45,
             a novel gene, the CCNC gene for cyclin C, a 40S ribosomal
             protein RPS3 pseudogene, the 5' end of the PRDM13 gene for
             PR-domain zinc-finger protein 13 and 5 CpG islands,
             complete sequence
          Length = 127413

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   aaatcttacgaggcaataaa 332
             ||||||||||||||||||||
Sbjct: 76893 aaatcttacgaggcaataaa 76874

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>emb|AL008637.1|HS833B7 Human DNA sequence from clone CTA-833B7 on chromosome 22q12.3-13.2
             Contains the NCF4 gene for cytosolic neutrophil factor 4
             (40kD), the 5' part of the CSF2RB gene for
             granulocyte-macrophage low-affinity colony stimulating
             factor 2 receptor beta, ESTs, STSs and GSSs, complete
             sequence
          Length = 86574

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 263   aaaatcaagataatagagagactg 286
             |||||||||| |||||||||||||
Sbjct: 39835 aaaatcaagagaatagagagactg 39858

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>gb|AC104449.3| Homo sapiens chromosome 3 clone RP11-460N16, complete sequence
          Length = 174531

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   aaaaataatgcaagttgatg 362
             ||||||||||||||||||||
Sbjct: 77642 aaaaataatgcaagttgatg 77623

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>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   ggagaggaaaaataatgcaa 355
             ||||||||||||||||||||
Sbjct: 50452 ggagaggaaaaataatgcaa 50471

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>ref|NM_001016968.2| Xenopus tropicalis golgi associated, gamma adaptin ear containing,
            ARF binding protein 1 (gga1), mRNA
          Length = 2306

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  agagactgctgaagaagagt 298
            ||||||||||||||||||||
Sbjct: 1308 agagactgctgaagaagagt 1289

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>emb|AL606646.3|OSJN00091 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087O24,
              complete sequence
          Length = 146168

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 292    gaagagttcaaggaggttgt 311
              ||||||||||||||||||||
Sbjct: 100160 gaagagttcaaggaggttgt 100179

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>gb|AC130650.2| Homo sapiens chromosome 16 clone CTA-276F8, complete sequence
          Length = 215286

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   agagtgcttttagaacaaaa 240
             ||||||||||||||||||||
Sbjct: 15668 agagtgcttttagaacaaaa 15687

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>gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, complete sequence
          Length = 214250

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   ggagcttccagtgaagactt 394
             ||||||||||||||||||||
Sbjct: 82038 ggagcttccagtgaagactt 82057

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>gb|AC104639.3| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 187942

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   aaaactggagaggaaaaata 349
             ||||||||||||||||||||
Sbjct: 39910 aaaactggagaggaaaaata 39891

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>gb|AC103922.2| Homo sapiens chromosome 3 clone RP11-226E22, complete sequence
          Length = 164479

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   aataaaactggagaggaaaa 346
             ||||||||||||||||||||
Sbjct: 39845 aataaaactggagaggaaaa 39864

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>gb|AC165267.2| Zea mays clone ZMMBBb-151F20, complete sequence
          Length = 115478

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  accaaaatcaagataataga 279
            ||||||||||||||||||||
Sbjct: 4815 accaaaatcaagataataga 4834

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>gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, complete sequence
          Length = 170393

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 330    aaaactggagaggaaaaata 349
              ||||||||||||||||||||
Sbjct: 132078 aaaactggagaggaaaaata 132097

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 292      gaagagttcaaggaggttgt 311
                ||||||||||||||||||||
Sbjct: 34049264 gaagagttcaaggaggttgt 34049283

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>gb|AC138070.3| Homo sapiens chromosome 3 clone RP11-263E3, complete sequence
          Length = 169834

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 327   aataaaactggagaggaaaa 346
             ||||||||||||||||||||
Sbjct: 93187 aataaaactggagaggaaaa 93168

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>gb|U91322.1|HSU91322 Human chromosome 16p13 BAC clone CIT987SK-276F8 complete sequence
          Length = 215286

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    agagtgcttttagaacaaaa 240
              ||||||||||||||||||||
Sbjct: 199619 agagtgcttttagaacaaaa 199600

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>emb|CR848466.2| Xenopus tropicalis finished cDNA, clone TEgg087a14
          Length = 2306

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 279  agagactgctgaagaagagt 298
            ||||||||||||||||||||
Sbjct: 1308 agagactgctgaagaagagt 1289

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>dbj|AB009608.1| Homo sapiens MITF gene for microphthalmia-associated transcription
            factor, partial cds
          Length = 7184

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  aaaaataatgcaagttgatg 362
            ||||||||||||||||||||
Sbjct: 5658 aaaaataatgcaagttgatg 5639

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>emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete
              sequence
          Length = 196078

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 446    gtggatgacaaacaaaaaat 465
              ||||||||||||||||||||
Sbjct: 114662 gtggatgacaaacaaaaaat 114681

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>gb|AC138594.10| Mus musculus chromosome 7, clone RP24-283N22, complete sequence
          Length = 167184

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   tggatgacaaacaaaaaatt 466
             ||||||||||||||||||||
Sbjct: 48799 tggatgacaaacaaaaaatt 48818


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,593,558
Number of Sequences: 3902068
Number of extensions: 5593558
Number of successful extensions: 93934
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93770
Number of HSP's gapped (non-prelim): 161
length of query: 468
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 446
effective length of database: 17,147,199,772
effective search space: 7647651098312
effective search space used: 7647651098312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result