| Clone Name | bags15p10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102102.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084A01, full insert sequence Length = 2556 Score = 571 bits (288), Expect = e-160 Identities = 501/570 (87%), Gaps = 4/570 (0%) Strand = Plus / Plus Query: 2 gtggatctggtgtacctgggnagtggccatagcacaaggtggtttttggggtacacatgc 61 |||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| Sbjct: 404 gtggatctggtgtacctggg-agtggccatagcacaaggtggtttctgggttacacatgc 462 Query: 62 tgtgatgcttgtgggcggttgtttgtgaaaggaaactactgtccagtttgcttgaaggtt 121 |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||| Sbjct: 463 tgtgatgcttgtggacgattatttgtgaaaggaaactactgtccagtttgcttgaaggtt 522 Query: 122 tatagagattctgaagtgatacctatggtttgctgcgacgtttgtgaaaagtgggtacat 181 ||||||||||||||||||||||| |||||||| || || ||||||||||||||||||||| Sbjct: 523 tatagagattctgaagtgataccaatggtttgttgtgatgtttgtgaaaagtgggtacat 582 Query: 182 attgaatgtgatggcatcagcgaggaaaagtaccagcagttccaagctgaccaaaatctc 241 ||||| ||||||||||||||||||||||| |||||||| || ||| | |||||||| || Sbjct: 583 attgagtgtgatggcatcagcgaggaaaaataccagcaatttcaatcggaccaaaacctt 642 Query: 242 cagtatacgtgcgcatcatgccgtggtgaatgctcccagatcagggatgcagaagatgca 301 ||||| || || | | |||||||||| |||||||||||||| ||||| |||||||||| Sbjct: 643 cagtacacatgtggagcatgccgtggcgaatgctcccagattagggacacagaagatgct 702 Query: 302 gttagggagctttggaagaggaggaacgttgttgatcatgatcttatgattagtttaagg 361 ||||||||||||||||||||| || | || ||||||||||| |||||| |||||||||| Sbjct: 703 gttagggagctttggaagaggcgggatgtagttgatcatgaccttatggctagtttaagg 762 Query: 362 gctgctgctggactgccttctttagaagatgtatcaccttgtc---caaactcggacgat 418 |||||||||| |||||||||||| |||||||| ||||| | || | ||||| || ||| Sbjct: 763 gctgctgctgcactgccttctttggaagatgtctcaccatctcatcctaactcagatgat 822 Query: 419 gaaagactaggtgcattagtattaaaaaatgatggtagaaacacactaaaattctcttta 478 |||| ||| ||||||| ||| | ||||||||||||||||||||||| ||||||||||| Sbjct: 823 gaaaaacttggtgcatatgtaatgaaaaatgatggtagaaacacactcaaattctctttc 882 Query: 479 aaaagtaacagcagtaagcctccattagatcaatgtgaacaagaaaagaatgttcctaag 538 ||||| ||||| | ||||||| |||||||| || ||||||||| ||||||| | ||| Sbjct: 883 aaaagcaacagtactaagcctgcattagattcatctgaacaagagaagaatgctatcaag 942 Query: 539 aactcagggacgaataagaagcattccaag 568 | ||||||| | |||||||||||||||||| Sbjct: 943 agctcagggtcaaataagaagcattccaag 972
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 222 bits (112), Expect = 1e-54 Identities = 249/294 (84%), Gaps = 3/294 (1%) Strand = Plus / Minus Query: 278 cagatcagggatgcagaagatgcagttagggagctttggaagaggaggaacgttgttgat 337 ||||| ||||| |||||||||| ||||||||||||||||||||| || | || |||||| Sbjct: 20845465 cagattagggacacagaagatgctgttagggagctttggaagaggcgggatgtagttgat 20845406 Query: 338 catgatcttatgattagtttaagggctgctgctggactgccttctttagaagatgtatca 397 ||||| |||||| |||||||||||||||||||| |||||||||||| |||||||| ||| Sbjct: 20845405 catgaccttatggctagtttaagggctgctgctgcactgccttctttggaagatgtctca 20845346 Query: 398 ccttgtc---caaactcggacgatgaaagactaggtgcattagtattaaaaaatgatggt 454 || | || | ||||| || ||||||| ||| ||||||| ||| | |||||||||||| Sbjct: 20845345 ccatctcatcctaactcagatgatgaaaaacttggtgcatatgtaatgaaaaatgatggt 20845286 Query: 455 agaaacacactaaaattctctttaaaaagtaacagcagtaagcctccattagatcaatgt 514 ||||||||||| ||||||||||| ||||| ||||| | ||||||| |||||||| || | Sbjct: 20845285 agaaacacactcaaattctctttcaaaagcaacagtactaagcctgcattagattcatct 20845226 Query: 515 gaacaagaaaagaatgttcctaagaactcagggacgaataagaagcattccaag 568 |||||||| ||||||| | |||| ||||||| | |||||||||||||||||| Sbjct: 20845225 gaacaagagaagaatgctatcaagagctcagggtcaaataagaagcattccaag 20845172 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 117 aggtttatagagattctgaagtgatacctatggtttgctgcgacgtttgtgaaaagtggg 176 |||||||||||||||||||||||||||| |||||||| || || |||||||||||||||| Sbjct: 20845867 aggtttatagagattctgaagtgataccaatggtttgttgtgatgtttgtgaaaagtggg 20845808 Query: 177 tacatattgaatgtgatggcatcag 201 |||||||||| |||||||||||||| Sbjct: 20845807 tacatattgagtgtgatggcatcag 20845783 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 38 aggtggtttttggggtacacatgctgtgatgcttgtgggcggttgtttgtgaaaggaaac 97 ||||||||| |||| ||||||||||||||||||||||| || || ||||||||||||||| Sbjct: 20846228 aggtggtttctgggttacacatgctgtgatgcttgtggacgattatttgtgaaaggaaac 20846169 Query: 98 tactgtccagtttgcttgaaggt 120 ||||||||||||||||||||||| Sbjct: 20846168 tactgtccagtttgcttgaaggt 20846146 Score = 63.9 bits (32), Expect = 5e-07 Identities = 39/40 (97%), Gaps = 1/40 (2%) Strand = Plus / Minus Query: 2 gtggatctggtgtacctgggnagtggccatagcacaaggt 41 |||||||||||||||||||| ||||||||||||||||||| Sbjct: 20846368 gtggatctggtgtacctggg-agtggccatagcacaaggt 20846330 Score = 60.0 bits (30), Expect = 9e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 199 cagcgaggaaaagtaccagcagttccaagctgaccaaaatctccagtatacgtgcgcatc 258 |||||||||||| |||||||| || ||| | |||||||| || ||||| || || | | | Sbjct: 20845623 cagcgaggaaaaataccagcaatttcaatcggaccaaaaccttcagtacacatgtggagc 20845564 Query: 259 atgccgtggtgaatgctcccag 280 ||||||||| |||||||||||| Sbjct: 20845563 atgccgtggcgaatgctcccag 20845542
>emb|AL928757.3|CNS08CBU Oryza sativa chromosome 12, . BAC OSJNBb0046O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 101075 Score = 222 bits (112), Expect = 1e-54 Identities = 249/294 (84%), Gaps = 3/294 (1%) Strand = Plus / Minus Query: 278 cagatcagggatgcagaagatgcagttagggagctttggaagaggaggaacgttgttgat 337 ||||| ||||| |||||||||| ||||||||||||||||||||| || | || |||||| Sbjct: 47195 cagattagggacacagaagatgctgttagggagctttggaagaggcgggatgtagttgat 47136 Query: 338 catgatcttatgattagtttaagggctgctgctggactgccttctttagaagatgtatca 397 ||||| |||||| |||||||||||||||||||| |||||||||||| |||||||| ||| Sbjct: 47135 catgaccttatggctagtttaagggctgctgctgcactgccttctttggaagatgtctca 47076 Query: 398 ccttgtc---caaactcggacgatgaaagactaggtgcattagtattaaaaaatgatggt 454 || | || | ||||| || ||||||| ||| ||||||| ||| | |||||||||||| Sbjct: 47075 ccatctcatcctaactcagatgatgaaaaacttggtgcatatgtaatgaaaaatgatggt 47016 Query: 455 agaaacacactaaaattctctttaaaaagtaacagcagtaagcctccattagatcaatgt 514 ||||||||||| ||||||||||| ||||| ||||| | ||||||| |||||||| || | Sbjct: 47015 agaaacacactcaaattctctttcaaaagcaacagtactaagcctgcattagattcatct 46956 Query: 515 gaacaagaaaagaatgttcctaagaactcagggacgaataagaagcattccaag 568 |||||||| ||||||| | |||| ||||||| | |||||||||||||||||| Sbjct: 46955 gaacaagagaagaatgctatcaagagctcagggtcaaataagaagcattccaag 46902 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 117 aggtttatagagattctgaagtgatacctatggtttgctgcgacgtttgtgaaaagtggg 176 |||||||||||||||||||||||||||| |||||||| || || |||||||||||||||| Sbjct: 47597 aggtttatagagattctgaagtgataccaatggtttgttgtgatgtttgtgaaaagtggg 47538 Query: 177 tacatattgaatgtgatggcatcag 201 |||||||||| |||||||||||||| Sbjct: 47537 tacatattgagtgtgatggcatcag 47513 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 38 aggtggtttttggggtacacatgctgtgatgcttgtgggcggttgtttgtgaaaggaaac 97 ||||||||| |||| ||||||||||||||||||||||| || || ||||||||||||||| Sbjct: 47958 aggtggtttctgggttacacatgctgtgatgcttgtggacgattatttgtgaaaggaaac 47899 Query: 98 tactgtccagtttgcttgaaggt 120 ||||||||||||||||||||||| Sbjct: 47898 tactgtccagtttgcttgaaggt 47876 Score = 63.9 bits (32), Expect = 5e-07 Identities = 39/40 (97%), Gaps = 1/40 (2%) Strand = Plus / Minus Query: 2 gtggatctggtgtacctgggnagtggccatagcacaaggt 41 |||||||||||||||||||| ||||||||||||||||||| Sbjct: 48098 gtggatctggtgtacctggg-agtggccatagcacaaggt 48060 Score = 60.0 bits (30), Expect = 9e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 199 cagcgaggaaaagtaccagcagttccaagctgaccaaaatctccagtatacgtgcgcatc 258 |||||||||||| |||||||| || ||| | |||||||| || ||||| || || | | | Sbjct: 47353 cagcgaggaaaaataccagcaatttcaatcggaccaaaaccttcagtacacatgtggagc 47294 Query: 259 atgccgtggtgaatgctcccag 280 ||||||||| |||||||||||| Sbjct: 47293 atgccgtggcgaatgctcccag 47272
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 222 bits (112), Expect = 1e-54 Identities = 249/294 (84%), Gaps = 3/294 (1%) Strand = Plus / Minus Query: 278 cagatcagggatgcagaagatgcagttagggagctttggaagaggaggaacgttgttgat 337 ||||| ||||| |||||||||| ||||||||||||||||||||| || | || |||||| Sbjct: 20771679 cagattagggacacagaagatgctgttagggagctttggaagaggcgggatgtagttgat 20771620 Query: 338 catgatcttatgattagtttaagggctgctgctggactgccttctttagaagatgtatca 397 ||||| |||||| |||||||||||||||||||| |||||||||||| |||||||| ||| Sbjct: 20771619 catgaccttatggctagtttaagggctgctgctgcactgccttctttggaagatgtctca 20771560 Query: 398 ccttgtc---caaactcggacgatgaaagactaggtgcattagtattaaaaaatgatggt 454 || | || | ||||| || ||||||| ||| ||||||| ||| | |||||||||||| Sbjct: 20771559 ccatctcatcctaactcagatgatgaaaaacttggtgcatatgtaatgaaaaatgatggt 20771500 Query: 455 agaaacacactaaaattctctttaaaaagtaacagcagtaagcctccattagatcaatgt 514 ||||||||||| ||||||||||| ||||| ||||| | ||||||| |||||||| || | Sbjct: 20771499 agaaacacactcaaattctctttcaaaagcaacagtactaagcctgcattagattcatct 20771440 Query: 515 gaacaagaaaagaatgttcctaagaactcagggacgaataagaagcattccaag 568 |||||||| ||||||| | |||| ||||||| | |||||||||||||||||| Sbjct: 20771439 gaacaagagaagaatgctatcaagagctcagggtcaaataagaagcattccaag 20771386 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 117 aggtttatagagattctgaagtgatacctatggtttgctgcgacgtttgtgaaaagtggg 176 |||||||||||||||||||||||||||| |||||||| || || |||||||||||||||| Sbjct: 20772081 aggtttatagagattctgaagtgataccaatggtttgttgtgatgtttgtgaaaagtggg 20772022 Query: 177 tacatattgaatgtgatggcatcag 201 |||||||||| |||||||||||||| Sbjct: 20772021 tacatattgagtgtgatggcatcag 20771997 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 38 aggtggtttttggggtacacatgctgtgatgcttgtgggcggttgtttgtgaaaggaaac 97 ||||||||| |||| ||||||||||||||||||||||| || || ||||||||||||||| Sbjct: 20772442 aggtggtttctgggttacacatgctgtgatgcttgtggacgattatttgtgaaaggaaac 20772383 Query: 98 tactgtccagtttgcttgaaggt 120 ||||||||||||||||||||||| Sbjct: 20772382 tactgtccagtttgcttgaaggt 20772360 Score = 63.9 bits (32), Expect = 5e-07 Identities = 39/40 (97%), Gaps = 1/40 (2%) Strand = Plus / Minus Query: 2 gtggatctggtgtacctgggnagtggccatagcacaaggt 41 |||||||||||||||||||| ||||||||||||||||||| Sbjct: 20772582 gtggatctggtgtacctggg-agtggccatagcacaaggt 20772544 Score = 60.0 bits (30), Expect = 9e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 199 cagcgaggaaaagtaccagcagttccaagctgaccaaaatctccagtatacgtgcgcatc 258 |||||||||||| |||||||| || ||| | |||||||| || ||||| || || | | | Sbjct: 20771837 cagcgaggaaaaataccagcaatttcaatcggaccaaaaccttcagtacacatgtggagc 20771778 Query: 259 atgccgtggtgaatgctcccag 280 ||||||||| |||||||||||| Sbjct: 20771777 atgccgtggcgaatgctcccag 20771756
>emb|AL732377.4|CNS08C90 Oryza sativa chromosome 12, . BAC OSJNBa0036E08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 149022 Score = 222 bits (112), Expect = 1e-54 Identities = 249/294 (84%), Gaps = 3/294 (1%) Strand = Plus / Minus Query: 278 cagatcagggatgcagaagatgcagttagggagctttggaagaggaggaacgttgttgat 337 ||||| ||||| |||||||||| ||||||||||||||||||||| || | || |||||| Sbjct: 143306 cagattagggacacagaagatgctgttagggagctttggaagaggcgggatgtagttgat 143247 Query: 338 catgatcttatgattagtttaagggctgctgctggactgccttctttagaagatgtatca 397 ||||| |||||| |||||||||||||||||||| |||||||||||| |||||||| ||| Sbjct: 143246 catgaccttatggctagtttaagggctgctgctgcactgccttctttggaagatgtctca 143187 Query: 398 ccttgtc---caaactcggacgatgaaagactaggtgcattagtattaaaaaatgatggt 454 || | || | ||||| || ||||||| ||| ||||||| ||| | |||||||||||| Sbjct: 143186 ccatctcatcctaactcagatgatgaaaaacttggtgcatatgtaatgaaaaatgatggt 143127 Query: 455 agaaacacactaaaattctctttaaaaagtaacagcagtaagcctccattagatcaatgt 514 ||||||||||| ||||||||||| ||||| ||||| | ||||||| |||||||| || | Sbjct: 143126 agaaacacactcaaattctctttcaaaagcaacagtactaagcctgcattagattcatct 143067 Query: 515 gaacaagaaaagaatgttcctaagaactcagggacgaataagaagcattccaag 568 |||||||| ||||||| | |||| ||||||| | |||||||||||||||||| Sbjct: 143066 gaacaagagaagaatgctatcaagagctcagggtcaaataagaagcattccaag 143013 Score = 129 bits (65), Expect = 1e-26 Identities = 80/85 (94%) Strand = Plus / Minus Query: 117 aggtttatagagattctgaagtgatacctatggtttgctgcgacgtttgtgaaaagtggg 176 |||||||||||||||||||||||||||| |||||||| || || |||||||||||||||| Sbjct: 143708 aggtttatagagattctgaagtgataccaatggtttgttgtgatgtttgtgaaaagtggg 143649 Query: 177 tacatattgaatgtgatggcatcag 201 |||||||||| |||||||||||||| Sbjct: 143648 tacatattgagtgtgatggcatcag 143624 Score = 125 bits (63), Expect = 2e-25 Identities = 78/83 (93%) Strand = Plus / Minus Query: 38 aggtggtttttggggtacacatgctgtgatgcttgtgggcggttgtttgtgaaaggaaac 97 ||||||||| |||| ||||||||||||||||||||||| || || ||||||||||||||| Sbjct: 144069 aggtggtttctgggttacacatgctgtgatgcttgtggacgattatttgtgaaaggaaac 144010 Query: 98 tactgtccagtttgcttgaaggt 120 ||||||||||||||||||||||| Sbjct: 144009 tactgtccagtttgcttgaaggt 143987 Score = 63.9 bits (32), Expect = 5e-07 Identities = 39/40 (97%), Gaps = 1/40 (2%) Strand = Plus / Minus Query: 2 gtggatctggtgtacctgggnagtggccatagcacaaggt 41 |||||||||||||||||||| ||||||||||||||||||| Sbjct: 144209 gtggatctggtgtacctggg-agtggccatagcacaaggt 144171 Score = 60.0 bits (30), Expect = 9e-06 Identities = 69/82 (84%) Strand = Plus / Minus Query: 199 cagcgaggaaaagtaccagcagttccaagctgaccaaaatctccagtatacgtgcgcatc 258 |||||||||||| |||||||| || ||| | |||||||| || ||||| || || | | | Sbjct: 143464 cagcgaggaaaaataccagcaatttcaatcggaccaaaaccttcagtacacatgtggagc 143405 Query: 259 atgccgtggtgaatgctcccag 280 ||||||||| |||||||||||| Sbjct: 143404 atgccgtggcgaatgctcccag 143383
>dbj|AK106543.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-E12, full insert sequence Length = 1746 Score = 111 bits (56), Expect = 3e-21 Identities = 107/124 (86%) Strand = Plus / Plus Query: 443 aaaaatgatggtagaaacacactaaaattctctttaaaaagtaacagcagtaagcctcca 502 ||||||||||||||||||||||| ||||||||||| ||||| ||||| | ||||||| || Sbjct: 15 aaaaatgatggtagaaacacactcaaattctctttcaaaagcaacagtactaagcctgca 74 Query: 503 ttagatcaatgtgaacaagaaaagaatgttcctaagaactcagggacgaataagaagcat 562 |||||| || ||||||||| ||||||| | |||| ||||||| | |||||||||||| Sbjct: 75 ttagattcatctgaacaagagaagaatgctatcaagagctcagggtcaaataagaagcat 134 Query: 563 tcca 566 |||| Sbjct: 135 tcca 138
>dbj|AP006144.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT23P21, TM0261, complete sequence Length = 121882 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 38 aggtggtttttggggtacacatgctgtgatgcttgtgggcggttgtttgtgaaaggaaac 97 |||||||| |||| ||||| ||||||||||||||||| | || ||||||||||| ||| Sbjct: 33710 aggtggttcctgggatacacctgctgtgatgcttgtggaagattatttgtgaaagggaac 33769 Query: 98 tactgtccagtttgcttgaaggt 120 |||||||| ||||| |||||||| Sbjct: 33770 tactgtcctgtttgtttgaaggt 33792 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 38 aggtggtttttggggtacacatgctgtgatgcttgtgggcggttgtttgtgaaaggaaac 97 |||||||| |||| ||||| ||||||||||||||||| | || ||||||||||| ||| Sbjct: 24314 aggtggttcctgggatacacctgctgtgatgcttgtggaagattatttgtgaaagggaac 24373 Query: 98 tactgtccagtttgcttgaaggt 120 |||||||| ||||| |||||||| Sbjct: 24374 tactgtcctgtttgtttgaaggt 24396
>ref|NM_115069.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc ion binding AT3G52100 mRNA, complete cds Length = 2091 Score = 58.0 bits (29), Expect = 3e-05 Identities = 71/85 (83%) Strand = Plus / Plus Query: 39 ggtggtttttggggtacacatgctgtgatgcttgtgggcggttgtttgtgaaaggaaact 98 |||||||||||||| | || || |||||||||||||| |||||||||| || || || | Sbjct: 833 ggtggtttttggggcatacttgttgtgatgcttgtggaaggttgtttgttaaggggaatt 892 Query: 99 actgtccagtttgcttgaaggttta 123 | ||||| || || ||||||||||| Sbjct: 893 attgtcctgtatgtttgaaggttta 917
>emb|AL049711.3|ATF4F15 Arabidopsis thaliana DNA chromosome 3, BAC clone F4F15 Length = 123209 Score = 54.0 bits (27), Expect = 5e-04 Identities = 69/83 (83%) Strand = Plus / Plus Query: 38 aggtggtttttggggtacacatgctgtgatgcttgtgggcggttgtttgtgaaaggaaac 97 ||||||||||||||| | || || |||||||||||||| |||||||||| || || || Sbjct: 69892 aggtggtttttggggcatacttgttgtgatgcttgtggaaggttgtttgttaaggggaat 69951 Query: 98 tactgtccagtttgcttgaaggt 120 || ||||| || || |||||||| Sbjct: 69952 tattgtcctgtatgtttgaaggt 69974
>ref|NM_111681.1| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/ zinc ion binding AT3G08020 mRNA, complete cds Length = 2295 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 59 tgctgtgatgcttgtgggcggttgtttgtgaaaggaaactactgtccagtttgcttgaag 118 ||||||||||||||||| | |||||||| || ||||| || || || || ||||||||| Sbjct: 814 tgctgtgatgcttgtggcagattgtttgttaagggaaattattgccctgtatgcttgaag 873 Query: 119 gtttatagagattc 132 || ||||| ||||| Sbjct: 874 gtgtatagggattc 887 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 tagtttaagggctgctgctg 371 |||||||||||||||||||| Sbjct: 1107 tagtttaagggctgctgctg 1126
>gb|AC125399.3| Mus musculus BAC clone RP24-245C15 from chromosome 14, complete sequence Length = 195425 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Plus Query: 441 taaaaaatgatggtagaaacaca 463 ||||||||||||||||||||||| Sbjct: 103911 taaaaaatgatggtagaaacaca 103933
>gb|AC013483.7|ATAC013483 Arabidopsis thaliana chromosome III BAC F17A17 genomic sequence, complete sequence Length = 121054 Score = 44.1 bits (22), Expect = 0.51 Identities = 52/62 (83%) Strand = Plus / Minus Query: 59 tgctgtgatgcttgtgggcggttgtttgtgaaaggaaactactgtccagtttgcttgaag 118 ||||||||||||||||| | |||||||| || ||||| || || || || ||||||||| Sbjct: 111048 tgctgtgatgcttgtggcagattgtttgttaagggaaattattgccctgtatgcttgaag 110989 Query: 119 gt 120 || Sbjct: 110988 gt 110987 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 tagtttaagggctgctgctgg 372 ||||||||||||||||||||| Sbjct: 110260 tagtttaagggctgctgctgg 110240
>emb|AL138835.9| Human DNA sequence from clone RP11-554F20 on chromosome 9 Contains part of a novel gene, complete sequence Length = 95615 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 467 aaattctctttaaaaagtaaca 488 |||||||||||||||||||||| Sbjct: 31579 aaattctctttaaaaagtaaca 31558
>gb|AY810998.1| Schistosoma japonicum SJCHGC00965 protein mRNA, partial cds Length = 1313 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 ggtacatattgaatgtgatgg 195 ||||||||||||||||||||| Sbjct: 1236 ggtacatattgaatgtgatgg 1256
>gb|AC026720.6| Homo sapiens chromosome 5 clone CTD-2193G21, complete sequence Length = 151090 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 464 ctaaaattctctttaaaaagtaaca 488 |||||||||| |||||||||||||| Sbjct: 94223 ctaaaattctatttaaaaagtaaca 94199
>gb|AC008693.9| Homo sapiens chromosome 5 clone CTB-69A13, complete sequence Length = 203568 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 464 ctaaaattctctttaaaaagtaaca 488 |||||||||| |||||||||||||| Sbjct: 67661 ctaaaattctatttaaaaagtaaca 67637
>emb|AJ507091.1|HVU507091 Hordeum vulgare partial mRNA for NBS-LRR disease resistance protein homologue (rga S-226 gene) Length = 5451 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 188 tgtgatggcatcagcgaggaa 208 ||||||||||||||||||||| Sbjct: 4952 tgtgatggcatcagcgaggaa 4972
>gb|AY810933.1| Schistosoma japonicum clone SJCHGC00966 unknown mRNA Length = 1075 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 ggtacatattgaatgtgatgg 195 ||||||||||||||||||||| Sbjct: 891 ggtacatattgaatgtgatgg 911
>emb|CR855307.18| Zebrafish DNA sequence from clone DKEYP-121D2 in linkage group 14, complete sequence Length = 167962 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 161 gtttgtgaaaagtgggtacat 181 ||||||||||||||||||||| Sbjct: 122060 gtttgtgaaaagtgggtacat 122080
>emb|CR954185.2| Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE Length = 210708 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 461 acactaaaattctctttaaaa 481 ||||||||||||||||||||| Sbjct: 169238 acactaaaattctctttaaaa 169258
>emb|AL935325.14| Mouse DNA sequence from clone RP23-101O16 on chromosome 4, complete sequence Length = 133845 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 468 aattctctttaaaaagtaacagcag 492 |||||||||||||| |||||||||| Sbjct: 98209 aattctctttaaaatgtaacagcag 98233
>gb|AC115789.9| Mus musculus chromosome 18, clone RP23-398N2, complete sequence Length = 206108 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gccgtggtgaatgctcccag 280 |||||||||||||||||||| Sbjct: 96823 gccgtggtgaatgctcccag 96842
>gb|AC140447.3| Mus musculus BAC clone RP23-53E23 from chromosome 9, complete sequence Length = 158157 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 353 agtttaagggctgctgctgg 372 |||||||||||||||||||| Sbjct: 13210 agtttaagggctgctgctgg 13191
>emb|CR450685.13| Zebrafish DNA sequence from clone DKEY-83K24 in linkage group 8, complete sequence Length = 195473 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 6116 tttgtgaaaagtgggtacat 6097
>emb|CR352251.11| Zebrafish DNA sequence from clone CH211-138M21 in linkage group 10, complete sequence Length = 175847 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 173337 tttgtgaaaagtgggtacat 173356
>emb|CR376787.10| Zebrafish DNA sequence from clone DKEY-33C9 in linkage group 7, complete sequence Length = 217684 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 139556 tttgtgaaaagtgggtacat 139537
>emb|CR788310.10| Zebrafish DNA sequence from clone DKEY-74F15 in linkage group 2, complete sequence Length = 244700 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 36470 tttgtgaaaagtgggtacat 36489
>emb|CR847802.11| Zebrafish DNA sequence from clone DKEY-48N1 in linkage group 18, complete sequence Length = 172545 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 118654 tttgtgaaaagtgggtacat 118673 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 118288 tttgtgaaaagtgggtacat 118307
>emb|CR394568.7| Zebrafish DNA sequence from clone CH211-253D5 in linkage group 21, complete sequence Length = 131341 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 99620 tttgtgaaaagtgggtacat 99639
>emb|BX927105.10| Zebrafish DNA sequence from clone DKEY-40F3 in linkage group 23, complete sequence Length = 52600 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 38471 tttgtgaaaagtgggtacat 38452
>emb|CR361563.10| Zebrafish DNA sequence from clone CH211-254L20 in linkage group 25, complete sequence Length = 150089 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 85267 tttgtgaaaagtgggtacat 85286
>emb|CR812474.6| Zebrafish DNA sequence from clone DKEY-179C7 in linkage group 14, complete sequence Length = 138313 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 93428 tttgtgaaaagtgggtacat 93409
>emb|BX664618.12| Zebrafish DNA sequence from clone DKEYP-82A1 in linkage group 8, complete sequence Length = 135532 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tggtagaaacacactaaaat 470 |||||||||||||||||||| Sbjct: 39124 tggtagaaacacactaaaat 39143
>emb|BX004991.18| Zebrafish DNA sequence from clone CH211-222F23 in linkage group 9, complete sequence Length = 202138 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 16395 tttgtgaaaagtgggtacat 16414
>emb|BX927314.11| Zebrafish DNA sequence from clone DKEYP-88H4 in linkage group 14, complete sequence Length = 79737 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 54679 tttgtgaaaagtgggtacat 54698
>emb|AL157827.17| Human DNA sequence from clone RP11-19J3 on chromosome 9q21.33-22.31 Contains the 5' end of the ASPN gene for asporin (LRR class 1), the ECM2 gene for female organ and adipocyte specific extracellular matrix protein 2, a pseudogene similar to part of cytochrome c oxidase I (MTCO1), the 3' end of a novel gene, the 3' end of the C9orf12 gene and a CpG island, complete sequence Length = 167734 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 463 actaaaattctctttaaaaa 482 |||||||||||||||||||| Sbjct: 83263 actaaaattctctttaaaaa 83244
>emb|BX465853.12| Zebrafish DNA sequence from clone DKEY-18F23 in linkage group 23, complete sequence Length = 220945 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 118745 tttgtgaaaagtgggtacat 118726
>emb|BX927315.10| Zebrafish DNA sequence from clone CH211-215B16 in linkage group 2, complete sequence Length = 172122 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 atggtagaaacacactaaaa 469 |||||||||||||||||||| Sbjct: 113192 atggtagaaacacactaaaa 113173
>emb|BX548246.17| Zebrafish DNA sequence from clone CH211-274P15 in linkage group 14, complete sequence Length = 155919 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 aatgtgaacaagaaaagaat 529 |||||||||||||||||||| Sbjct: 154954 aatgtgaacaagaaaagaat 154973
>emb|BX649198.6| Zebrafish DNA sequence from clone DKEY-18L1 in linkage group 9, complete sequence Length = 139896 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 59841 tttgtgaaaagtgggtacat 59822
>emb|CR391995.4| Zebrafish DNA sequence from clone CH211-229I10, complete sequence Length = 134975 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 46193 tttgtgaaaagtgggtacat 46212
>emb|BX547996.10| Zebrafish DNA sequence from clone CH211-212H16 in linkage group 1, complete sequence Length = 213398 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 58540 tttgtgaaaagtgggtacat 58559
>gb|AC099673.2| Homo sapiens chromosome 1 clone RP11-109H10, complete sequence Length = 193749 Score = 40.1 bits (20), Expect = 8.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 455 agaaacacactaaaattctctttaaaaa 482 ||||||||||||||| ||||||| |||| Sbjct: 41327 agaaacacactaaaaatctctttgaaaa 41300
>emb|BX088708.14| Zebrafish DNA sequence from clone CH211-196B14 in linkage group 3, complete sequence Length = 193659 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 116945 tttgtgaaaagtgggtacat 116964
>emb|BX324130.5| Zebrafish DNA sequence from clone DKEY-30J16 in linkage group 11, complete sequence Length = 209188 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 41110 tttgtgaaaagtgggtacat 41129
>emb|CR626922.13| Zebrafish DNA sequence from clone DKEY-33K14 in linkage group 18, complete sequence Length = 122627 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 74832 tttgtgaaaagtgggtacat 74813 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 74506 tttgtgaaaagtgggtacat 74487
>emb|BX957270.8| Zebrafish DNA sequence from clone DKEYP-14F10 in linkage group 4 Contains four CpG islands, complete sequence Length = 143792 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 31896 tttgtgaaaagtgggtacat 31915
>emb|BX247901.12| Zebrafish DNA sequence from clone CH211-206H4 in linkage group 4 Contains four CpG islands, complete sequence Length = 101223 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 85797 tttgtgaaaagtgggtacat 85778
>emb|BX649501.24| Zebrafish DNA sequence from clone DKEY-123F20 in linkage group 5, complete sequence Length = 194220 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 70877 tttgtgaaaagtgggtacat 70858
>emb|CR361558.6| Zebrafish DNA sequence from clone DKEY-22K11 in linkage group 13, complete sequence Length = 204631 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 22886 tttgtgaaaagtgggtacat 22867
>emb|BX088705.18| Zebrafish DNA sequence from clone DKEY-21G19, complete sequence Length = 204103 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 107433 tttgtgaaaagtgggtacat 107452
>emb|BX649550.6| Zebrafish DNA sequence from clone CH211-120K2 in linkage group 6, complete sequence Length = 170472 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 31876 tttgtgaaaagtgggtacat 31895
>emb|BX322661.17| Zebrafish DNA sequence from clone RP71-78H1 in linkage group 9, complete sequence Length = 146527 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 4637 tttgtgaaaagtgggtacat 4656
>emb|BX663615.15| Zebrafish DNA sequence from clone DKEY-14B2 in linkage group 7, complete sequence Length = 212543 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 100213 tttgtgaaaagtgggtacat 100232
>emb|BX548008.7| Zebrafish DNA sequence from clone DKEY-220G10 in linkage group 23, complete sequence Length = 186246 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 10261 tttgtgaaaagtgggtacat 10280
>emb|BX004828.21| Zebrafish DNA sequence from clone DKEY-185M8, complete sequence Length = 161870 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 aatgtgaacaagaaaagaat 529 |||||||||||||||||||| Sbjct: 64523 aatgtgaacaagaaaagaat 64504
>emb|BX914204.20| Zebrafish DNA sequence from clone CH211-113E18 in linkage group 18, complete sequence Length = 169369 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 88469 tttgtgaaaagtgggtacat 88488
>emb|BX248494.25| Zebrafish DNA sequence from clone XXyac-67H7_L, complete sequence Length = 125031 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 89730 tttgtgaaaagtgggtacat 89749
>emb|AL953886.9| Zebrafish DNA sequence from clone CH211-241A17 in linkage group 6, complete sequence Length = 154152 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 112348 tttgtgaaaagtgggtacat 112367
>emb|BX323992.9| Zebrafish DNA sequence from clone DKEY-185B14 in linkage group 12, complete sequence Length = 153572 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 11726 tttgtgaaaagtgggtacat 11707
>emb|BX936456.6| Zebrafish DNA sequence from clone DKEY-266J9 in linkage group 18, complete sequence Length = 173079 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 61494 tttgtgaaaagtgggtacat 61513
>gb|AC021193.7| Homo sapiens BAC clone RP11-774G5 from 4, complete sequence Length = 217985 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 465 taaaattctctttaaaaagtaaca 488 |||||| ||||||||||||||||| Sbjct: 36690 taaaatactctttaaaaagtaaca 36667
>emb|BX649412.8| Zebrafish DNA sequence from clone DKEY-116G10 in linkage group 1, complete sequence Length = 78932 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 39332 tttgtgaaaagtgggtacat 39351
>emb|BX663520.9| Zebrafish DNA sequence from clone DKEY-105H12 in linkage group 15, complete sequence Length = 248279 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 164 tttgtgaaaagtgggtacat 145
>emb|BX649559.12| Zebrafish DNA sequence from clone DKEY-33C3 in linkage group 3, complete sequence Length = 143056 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 475 tttaaaaagtaacagcagta 494 |||||||||||||||||||| Sbjct: 59736 tttaaaaagtaacagcagta 59717
>emb|BX248329.10| Zebrafish DNA sequence from clone CH211-206P14, complete sequence Length = 151789 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 aatgtgaacaagaaaagaat 529 |||||||||||||||||||| Sbjct: 142244 aatgtgaacaagaaaagaat 142263
>emb|BX569778.15| Zebrafish DNA sequence from clone DKEY-21J8 in linkage group 1, complete sequence Length = 255895 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 122457 tttgtgaaaagtgggtacat 122438
>emb|BX511085.16| Zebrafish DNA sequence from clone DKEY-273I10 in linkage group 22, complete sequence Length = 117103 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 57008 tttgtgaaaagtgggtacat 56989
>emb|BX248239.12| Zebrafish DNA sequence from clone CH211-213I9 in linkage group 2, complete sequence Length = 200856 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 82141 tttgtgaaaagtgggtacat 82160
>dbj|AK034977.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430069G01 product:unclassifiable, full insert sequence Length = 4014 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 agtttaagggctgctgctgg 372 |||||||||||||||||||| Sbjct: 1580 agtttaagggctgctgctgg 1599
>emb|BX005388.20| Zebrafish DNA sequence from clone DKEY-164M7, complete sequence Length = 220740 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 163217 tttgtgaaaagtgggtacat 163236
>emb|BX571960.6| Zebrafish DNA sequence from clone DKEY-165I8 in linkage group 3, complete sequence Length = 192501 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 162 tttgtgaaaagtgggtacat 143
>emb|BX005282.24| Zebrafish DNA sequence from clone DKEY-37M22 in linkage group 11, complete sequence Length = 153270 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 96331 tttgtgaaaagtgggtacat 96312
>gb|AC124730.5| Mus musculus chromosome 5 clone RP23-286M3, complete sequence Length = 194040 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 474 ctttaaaaagtaacagcagt 493 |||||||||||||||||||| Sbjct: 155935 ctttaaaaagtaacagcagt 155916
>emb|BX248399.5| Zebrafish DNA sequence from clone CH211-233A1 in linkage group 10, complete sequence Length = 158884 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 144069 tttgtgaaaagtgggtacat 144050
>emb|BX004814.8| Zebrafish DNA sequence from clone CH211-103I6 in linkage group 1, complete sequence Length = 171710 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 168665 tttgtgaaaagtgggtacat 168646
>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12, complete sequence Length = 177468 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 147657 tttgtgaaaagtgggtacat 147676
>emb|AL954740.9| Zebrafish DNA sequence from clone DKEY-120P15 in linkage group 8, complete sequence Length = 151947 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 451 tggtagaaacacactaaaat 470 |||||||||||||||||||| Sbjct: 117715 tggtagaaacacactaaaat 117734
>emb|AL935299.11| Zebrafish DNA sequence from clone DKEY-38M5, complete sequence Length = 229574 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 aatgtgaacaagaaaagaat 529 |||||||||||||||||||| Sbjct: 141114 aatgtgaacaagaaaagaat 141133
>emb|BX248228.3| Zebrafish DNA sequence from clone RP71-40J23 in linkage group 23, complete sequence Length = 141134 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 116535 tttgtgaaaagtgggtacat 116516
>emb|BX005406.8| Zebrafish DNA sequence from clone CH211-169P10 in linkage group 8, complete sequence Length = 132872 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 77704 tttgtgaaaagtgggtacat 77685
>emb|AL845493.5| Zebrafish DNA sequence from clone DKEYP-77C8 in linkage group 20, complete sequence Length = 176916 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 20112 tttgtgaaaagtgggtacat 20093
>emb|AL935046.6| Zebrafish DNA sequence from clone CH211-171K3, complete sequence Length = 162239 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 2404 tttgtgaaaagtgggtacat 2423
>emb|BX255911.8| Zebrafish DNA sequence from clone DKEY-274C14 in linkage group 20, complete sequence Length = 206480 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 165606 tttgtgaaaagtgggtacat 165587
>emb|BX649295.46| Zebrafish DNA sequence from clone CH211-207C7 in linkage group 22, complete sequence Length = 129991 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 60936 tttgtgaaaagtgggtacat 60955
>emb|BX927276.23| Zebrafish DNA sequence from clone CH211-124A3 in linkage group 22, complete sequence Length = 166844 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 78760 tttgtgaaaagtgggtacat 78741
>emb|CR381630.12| Zebrafish DNA sequence from clone CH211-234G24 in linkage group 18, complete sequence Length = 152854 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 96324 tttgtgaaaagtgggtacat 96305
>emb|CR847788.7| Zebrafish DNA sequence from clone CH211-249H16 in linkage group 10, complete sequence Length = 176964 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 139243 tttgtgaaaagtgggtacat 139262
>emb|CR354540.12| Zebrafish DNA sequence from clone DKEY-235K4 in linkage group 7, complete sequence Length = 165122 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 75764 tttgtgaaaagtgggtacat 75783
>emb|BX901926.19| Zebrafish DNA sequence from clone CH211-195N20 in linkage group 1, complete sequence Length = 204799 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 21965 tttgtgaaaagtgggtacat 21984
>emb|AL807829.21| Zebrafish DNA sequence from clone CH211-246M4 in linkage group 9, complete sequence Length = 166114 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 45362 tttgtgaaaagtgggtacat 45343
>emb|BX927343.16| Zebrafish DNA sequence from clone CH211-57L21 in linkage group 16, complete sequence Length = 166820 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 111845 tttgtgaaaagtgggtacat 111864
>emb|BX119925.7| Zebrafish DNA sequence from clone CH211-197K21 in linkage group 2, complete sequence Length = 151581 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 510 aatgtgaacaagaaaagaat 529 |||||||||||||||||||| Sbjct: 1719 aatgtgaacaagaaaagaat 1738
>gb|AC087416.18| Mus musculus strain C57BL/6J chromosome 2 clone rp23-224l16, complete sequence Length = 183349 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cttgaaggtttatagagatt 131 |||||||||||||||||||| Sbjct: 166450 cttgaaggtttatagagatt 166469
>dbj|AB041522.1| Lymnaea stagnalis mRNA for cAMP responsive element binding protein, complete cds Length = 2938 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 aaaattctctttaaaaagta 485 |||||||||||||||||||| Sbjct: 1468 aaaattctctttaaaaagta 1487
>emb|AL732628.18| Zebrafish DNA sequence from clone CH211-144F18 in linkage group 19, complete sequence Length = 174130 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 94827 tttgtgaaaagtgggtacat 94846
>emb|AL935303.7| Zebrafish DNA sequence from clone CH211-197A2, complete sequence Length = 185410 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 154441 tttgtgaaaagtgggtacat 154460
>emb|AL929457.12| Zebrafish DNA sequence from clone CH211-153I8 in linkage group 14, complete sequence Length = 164299 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 149877 tttgtgaaaagtgggtacat 149896
>emb|CR388224.11| Zebrafish DNA sequence from clone CH211-23L10 in linkage group 3, complete sequence Length = 130988 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 128289 tttgtgaaaagtgggtacat 128308
>gb|AC125063.4| Mus musculus BAC clone RP23-425N17 from 5, complete sequence Length = 194931 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 ctttaaaaagtaacagcagt 493 |||||||||||||||||||| Sbjct: 191185 ctttaaaaagtaacagcagt 191204
>emb|CR391944.10| Zebrafish DNA sequence from clone CH211-95K19 in linkage group 3, complete sequence Length = 172806 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 22742 tttgtgaaaagtgggtacat 22761
>emb|BX510330.20| Zebrafish DNA sequence from clone DKEYP-82B3 in linkage group 13, complete sequence Length = 96887 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 51024 tttgtgaaaagtgggtacat 51043
>emb|AL935188.7| Zebrafish DNA sequence from clone CH211-243G6, complete sequence Length = 160946 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tttgtgaaaagtgggtacat 181 |||||||||||||||||||| Sbjct: 39741 tttgtgaaaagtgggtacat 39760
>gb|CP000030.1| Anaplasma marginale str. St. Maries, complete genome Length = 1197687 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 gaagaggaggaacgttgttg 335 |||||||||||||||||||| Sbjct: 820978 gaagaggaggaacgttgttg 820959
>emb|AL670544.7| Mouse DNA sequence from clone RP23-16G8 on chromosome X, complete sequence Length = 236946 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 466 aaaattctctttaaaaagta 485 |||||||||||||||||||| Sbjct: 98020 aaaattctctttaaaaagta 98001
>emb|AL805918.5| Mouse DNA sequence from clone RP23-191L7 on chromosome 2, complete sequence Length = 213625 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 cttgaaggtttatagagatt 131 |||||||||||||||||||| Sbjct: 206550 cttgaaggtttatagagatt 206569 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,937,649 Number of Sequences: 3902068 Number of extensions: 5937649 Number of successful extensions: 130882 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 130526 Number of HSP's gapped (non-prelim): 351 length of query: 585 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 562 effective length of database: 17,143,297,704 effective search space: 9634533309648 effective search space used: 9634533309648 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)