ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16e15 |
|---|---|
| Clone Library Name | barley_pub |
>EVI1_HUMAN (Q03112) Ecotropic virus integration 1 site protein| Length = 1051 Score = 31.6 bits (70), Expect = 1.9 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = +1 Query: 331 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSKPPSD 474 PA+S GS + + GT+ T N GGK S+V S+P SD Sbjct: 577 PATSQDQPLDLSMGSRSRASGTKLTEPRKNHVFGGKKGSNVESRPASD 624
>SLAP1_CLOTM (Q06852) Cell surface glycoprotein 1 precursor (Outer layer protein| B) (S-layer protein 1) Length = 1664 Score = 30.8 bits (68), Expect = 3.2 Identities = 15/56 (26%), Positives = 26/56 (46%) Frame = +1 Query: 328 IPASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSKPPSDHGSGRDV 495 +P S P K T + A ++ + TPS GG+ R+++R P R++ Sbjct: 1414 VPTSPTPTPTSKPTSTPAPTEIEEPTPSDVPGAIGGEHRAYLRGYPDGSFRPERNI 1469
>NDR1A_XENLA (Q641F2) Protein NDRG1-A (xNDRG1-A)| Length = 396 Score = 30.8 bits (68), Expect = 3.2 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +1 Query: 328 IPASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSH 450 +PA+S+ + +TGSAA S S ++ G ++RSH Sbjct: 316 MPAASMTRLMRSRTGSAASSSSQDGNRSRSHTNEGSRSRSH 356
>SF3B1_MOUSE (Q99NB9) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) Length = 1304 Score = 30.8 bits (68), Expect = 3.2 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Frame = +1 Query: 331 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSK----PPSD-----HGS 483 P S + T + A + G TP A PGHGG T S +++ P ++ HGS Sbjct: 249 PGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGS 308 Query: 484 G 486 G Sbjct: 309 G 309
>SF3B1_HUMAN (O75533) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) Length = 1304 Score = 30.8 bits (68), Expect = 3.2 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Frame = +1 Query: 331 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSK----PPSD-----HGS 483 P S + T + A + G TP A PGHGG T S +++ P ++ HGS Sbjct: 249 PGSKIWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSARKNRWDETPKTERDTPGHGS 308 Query: 484 G 486 G Sbjct: 309 G 309
>NDRG1_XENTR (Q66IG4) Protein NDRG1| Length = 395 Score = 30.8 bits (68), Expect = 3.2 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +1 Query: 328 IPASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSH 450 +PA+S+ + +TGSAA S S ++ G ++RSH Sbjct: 315 MPAASMTRLMRSRTGSAASSSSQDGNRSRSHTNEGSRSRSH 355
>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC| 3.1.3.16) (Pleckstrin homology domain-containing family E protein 1) (Suprachiasmatic nucleus circadian oscillatory protein) Length = 1696 Score = 30.8 bits (68), Expect = 3.2 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = +1 Query: 331 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSKPPSDHGSGRDVQSE 504 PA++ PA+R AD G + P+AA GG++ V S G+G + E Sbjct: 3 PAAAAPAQR------LADPTGEDRAPAAAAAAEGGRSPDSVLSAAAPSGGNGGAAREE 54
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 30.8 bits (68), Expect = 3.2 Identities = 20/58 (34%), Positives = 24/58 (41%) Frame = -3 Query: 586 PPRCTRGVASTRRSGRRCSLVAGATTSSPTAHHGHCRDLTAACF*HGYGSCRRGQGSP 413 P CT G R SGRR + A T P + R +A G G+C R G P Sbjct: 46 PCMCTAGRRPNRASGRRRRSCSPAPTWPPLCCYPQSRPTASAA---GPGACMRASGRP 100
>NFIX_HUMAN (Q14938) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 502 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +1 Query: 226 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 405 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLYKS 153 Query: 406 PSAANPG 426 P +NPG Sbjct: 154 PQCSNPG 160
>NFIX_MOUSE (P70257) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 488 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +1 Query: 226 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 405 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLYKS 153 Query: 406 PSAANPG 426 P +NPG Sbjct: 154 PQCSNPG 160
>NFIX_MESAU (P13623) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 441 Score = 30.4 bits (67), Expect = 4.2 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +1 Query: 226 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 405 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLYKS 153 Query: 406 PSAANPG 426 P +NPG Sbjct: 154 PQCSNPG 160
>NEUM_CHICK (P35001) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) Length = 246 Score = 30.4 bits (67), Expect = 4.2 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 8/69 (11%) Frame = +1 Query: 337 SSVPAERKKKTGSAADSQGTQKTPSAA--------NPGHGGKTRSHVRSKPPSDHGSGRD 492 SSVP E KK G AAD+ Q P AA P +T S ++ + D Sbjct: 108 SSVPTEEKKGNG-AADTGSEQPAPQAATPAASSEEKPAAAAETESATKASTDNSPSLKAD 166 Query: 493 VQSEKRSLH 519 KRSL+ Sbjct: 167 EAKTKRSLN 175
>V33P_ADE40 (P11805) 33 kDa phosphoprotein| Length = 211 Score = 30.4 bits (67), Expect = 4.2 Identities = 22/74 (29%), Positives = 34/74 (45%) Frame = +3 Query: 360 EEDRLGCRLARHPEDTVGGEPWPRRQDP*PCQKQAAVRSRQWP*CAVGEEVVAPATSEHR 539 EE+ + A + V +P P+ P P Q + SR+W ++ APA Sbjct: 61 EEETIASDKAPSFKKPVRSQP-PKTIPPLPPQPCSLKASRRWDTVSIAGSPTAPAA---- 115 Query: 540 RPDRRVEATPRVHR 581 P +R+E TPRV + Sbjct: 116 -PTKRLEKTPRVRK 128
>CALX_ASPFU (Q6Q487) Calnexin homolog precursor| Length = 563 Score = 30.0 bits (66), Expect = 5.5 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +1 Query: 331 PASSVPAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRS 459 PA + A++ K+ SAA + ++ SAA+ G T+ + RS Sbjct: 518 PAPAAAAKKGKEAASAAKEKASEAVSSAADTAKGAATKRNTRS 560
>BAG3_HUMAN (O95817) BAG family molecular chaperone regulator 3 (BCL-2-binding| athanogene-3) (BAG-3) (Bcl-2-binding protein Bis) (Docking protein CAIR-1) Length = 575 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/59 (30%), Positives = 24/59 (40%) Frame = -3 Query: 571 RGVASTRRSGRRCSLVAGATTSSPTAHHGHCRDLTAACF*HGYGSCRRGQGSPPTVSSG 395 RG+ T + ++C VA A + P A HG R + A C S SSG Sbjct: 139 RGMPETTQPDKQCGQVAAAAAAQPPASHGPERSQSPAA-----SDCSSSSSSASLPSSG 192
>REF2P_DROSI (Q24629) Protein ref(2)P (Refractory to sigma P)| Length = 599 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +1 Query: 346 PAERKKKTGSAADSQGTQKT-PSAANPGHGGKTRSHVRSKPPSDHGSGRDVQSEKRSLH 519 P E+ + +G +A S +Q PSAA + S +S PS GS D Q E L+ Sbjct: 372 PEEQSQSSGQSAASSASQSAVPSAAPSANQSNVPSANQSATPSISGSISDAQLETEPLN 430
>NFIX_CHICK (Q90932) Nuclear factor 1 X-type (Nuclear factor 1/X) (NF1-X)| (NFI-X) (NF-I/X) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 431 Score = 29.6 bits (65), Expect = 7.2 Identities = 20/67 (29%), Positives = 30/67 (44%) Frame = +1 Query: 226 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 405 P VLS P +G +RRI + ++ R + +I VP E + D + K Sbjct: 101 PCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGVPLE-------STDGERLAKA 153 Query: 406 PSAANPG 426 P A+PG Sbjct: 154 PQCASPG 160
>TIF1G_HUMAN (Q9UPN9) Transcription intermediary factor 1-gamma (TIF1-gamma)| (RET-fused gene 7 protein) (Rfg7 protein) (Tripartite motif protein 33) Length = 1127 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 406 PSAANPGHGGKTRSHVRSKPPSDHGSG 486 PSA +PG G + SH +PPS +G Sbjct: 723 PSALSPGSSGLSNSHTPVRPPSTSSTG 749
>TIF1G_MOUSE (Q99PP7) Transcription intermediary factor 1-gamma (TIF1-gamma)| (Tripartite motif protein 33) Length = 1142 Score = 29.6 bits (65), Expect = 7.2 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 406 PSAANPGHGGKTRSHVRSKPPSDHGSG 486 PSA +PG G + SH +PPS +G Sbjct: 738 PSALSPGSSGLSNSHTPVRPPSTSSTG 764
>LTB1S_MOUSE (Q8CG18) Latent transforming growth factor beta-binding protein,| isoform 1S precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta1-BP-1) Length = 1389 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Frame = -3 Query: 586 PPRCTRGVASTRRSGRRCSLVAGATTSSPTAHHGHCRDLTAA-----CF*HGYGSCRRGQ 422 P CT G + CS G SPT H HC+D+ C G CR Sbjct: 714 PKVCTNGSCTNLEGSYMCSCHRGY---SPTPDHRHCQDIDECQQGNLCM---NGQCRNTD 767 Query: 421 GS 416 GS Sbjct: 768 GS 769
>DHN1_MAIZE (P12950) Dehydrin DHN1 (M3) (RAB-17 protein)| Length = 168 Score = 29.3 bits (64), Expect = 9.4 Identities = 22/99 (22%), Positives = 38/99 (38%) Frame = +1 Query: 166 SGRVEEYGRPVAAGEILSANPNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSV 345 +G V++YG PV E + H G + + + GQ Sbjct: 14 TGHVDQYGNPVGGVEHGTGGMRHGTGTTGGMGQLGE----HGGAGMGGGQFQ-------- 61 Query: 346 PAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSK 462 PA + KTG G+ + S+ + G GG+ + ++ K Sbjct: 62 PAREEHKTGGILHRSGSSSSSSSEDDGMGGRRKKGIKEK 100
>NFIA_MOUSE (Q02780) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 532 Score = 29.3 bits (64), Expect = 9.4 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +1 Query: 226 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 405 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 124 PCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLVKS 176 Query: 406 PSAANPG 426 P +NPG Sbjct: 177 PQCSNPG 183
>NFIA_CHICK (P17923) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 522 Score = 29.3 bits (64), Expect = 9.4 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +1 Query: 226 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 405 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLVKS 153 Query: 406 PSAANPG 426 P +NPG Sbjct: 154 PQCSNPG 160
>SH2P1_XENTR (Q6DEU9) SH2 domain-binding protein 1| Length = 1172 Score = 29.3 bits (64), Expect = 9.4 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = +1 Query: 346 PAERKKKTGSAADSQGTQKTPSAANPGHGGKTRSHVRSKPPSDHGSGRD 492 P ++K+K G + G ++ G GG+ + R K P G G D Sbjct: 935 PRKKKRKKGGGSSGSGGEQG-EGGEEGEGGEKKKKKRRKRPQKGGDGSD 982
>NFIA_RAT (P09414) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 509 Score = 29.3 bits (64), Expect = 9.4 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +1 Query: 226 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 405 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLVKS 153 Query: 406 PSAANPG 426 P +NPG Sbjct: 154 PQCSNPG 160
>NFIA_HUMAN (Q12857) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)| (NFI-A) (NF-I/A) (CCAAT-box-binding transcription factor) (CTF) (TGGCA-binding protein) Length = 509 Score = 29.3 bits (64), Expect = 9.4 Identities = 19/67 (28%), Positives = 31/67 (46%) Frame = +1 Query: 226 PNHVLSKPCSQGVVRRILIVSPESELERGQIYFLIPASSVPAERKKKTGSAADSQGTQKT 405 P VLS P +G +RRI + ++ R + +I +P E + D + K+ Sbjct: 101 PCCVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLE-------STDGERLVKS 153 Query: 406 PSAANPG 426 P +NPG Sbjct: 154 PQCSNPG 160
>LTB1L_MOUSE (Q8CG19) Latent transforming growth factor beta-binding protein,| isoform 1L precursor (LTBP-1) (Transforming growth factor beta-1-binding protein 1) (TGF-beta1-BP-1) Length = 1713 Score = 29.3 bits (64), Expect = 9.4 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Frame = -3 Query: 586 PPRCTRGVASTRRSGRRCSLVAGATTSSPTAHHGHCRDLTAA-----CF*HGYGSCRRGQ 422 P CT G + CS G SPT H HC+D+ C G CR Sbjct: 1038 PKVCTNGSCTNLEGSYMCSCHRGY---SPTPDHRHCQDIDECQQGNLCM---NGQCRNTD 1091 Query: 421 GS 416 GS Sbjct: 1092 GS 1093 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,925,499 Number of Sequences: 219361 Number of extensions: 1493601 Number of successful extensions: 5841 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 5428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5832 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
