ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16e15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC134341.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0027N19, complete sequence Length = 141368 Score = 212 bits (107), Expect = 1e-51 Identities = 152/167 (91%) Strand = Plus / Plus Query: 87 aatgggcaatagcttgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacct 146 ||||||||| ||| |||| |||||||| |||||||| |||||||||||||| || ||||| Sbjct: 93562 aatgggcaacagcctgagatgctgcctagcttgcgtcctcccctgcggcgccctcgacct 93621 Query: 147 gatcaggatcgtccacctcagcggccgcgtcgaggagtacggccggccggtcgccgccgg 206 |||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| Sbjct: 93622 gatcaggatcgtccacctcaacggccgcgtcgaggagtacgggcgcccggtcgccgccgg 93681 Query: 207 cgagatcctctccgctaacccaaaccacgtgctgagcaagccgtgct 253 |||||||||| |||| ||||| |||||||| || ||||||||||||| Sbjct: 93682 cgagatcctcgccgccaaccccaaccacgtcctcagcaagccgtgct 93728 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 277 ctcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcccggcg 336 ||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||| Sbjct: 93767 ctcatcgtctcgccggactccgagctggagcgcggcgagatctacttcctcatcccggcc 93826 Query: 337 tcctcggtgccgg 349 ||||| ||||||| Sbjct: 93827 tcctccgtgccgg 93839 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 510 gtcgttgcaccggcgacgagtgagcaccggcggccggaccgtcgtgtggaggccacacct 569 ||||||||||||||| || ||||| ||||| ||||||| | | ||||||||||||||| Sbjct: 93991 gtcgttgcaccggcggcgcatgagcgccggcagccggacggcggcgtggaggccacacct 94050 Query: 570 cgagtgcatcgtggagggcacttga 594 |||||||||||| |||| ||||||| Sbjct: 94051 cgagtgcatcgtagaggacacttga 94075
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 212 bits (107), Expect = 1e-51 Identities = 152/167 (91%) Strand = Plus / Plus Query: 87 aatgggcaatagcttgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacct 146 ||||||||| ||| |||| |||||||| |||||||| |||||||||||||| || ||||| Sbjct: 3772632 aatgggcaacagcctgagatgctgcctagcttgcgtcctcccctgcggcgccctcgacct 3772691 Query: 147 gatcaggatcgtccacctcagcggccgcgtcgaggagtacggccggccggtcgccgccgg 206 |||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||| Sbjct: 3772692 gatcaggatcgtccacctcaacggccgcgtcgaggagtacgggcgcccggtcgccgccgg 3772751 Query: 207 cgagatcctctccgctaacccaaaccacgtgctgagcaagccgtgct 253 |||||||||| |||| ||||| |||||||| || ||||||||||||| Sbjct: 3772752 cgagatcctcgccgccaaccccaaccacgtcctcagcaagccgtgct 3772798 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 277 ctcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcccggcg 336 ||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||| Sbjct: 3772837 ctcatcgtctcgccggactccgagctggagcgcggcgagatctacttcctcatcccggcc 3772896 Query: 337 tcctcggtgccgg 349 ||||| ||||||| Sbjct: 3772897 tcctccgtgccgg 3772909 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 510 gtcgttgcaccggcgacgagtgagcaccggcggccggaccgtcgtgtggaggccacacct 569 ||||||||||||||| || ||||| ||||| ||||||| | | ||||||||||||||| Sbjct: 3773061 gtcgttgcaccggcggcgcatgagcgccggcagccggacggcggcgtggaggccacacct 3773120 Query: 570 cgagtgcatcgtggagggcacttga 594 |||||||||||| |||| ||||||| Sbjct: 3773121 cgagtgcatcgtagaggacacttga 3773145 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 106 tgctgcctggcttgcgtgctcccctgcggcgcgctggacctgatcaggatcgtccacctc 165 ||||||||||| ||| |||||||||||||||| || ||| | || | |||| |||||| Sbjct: 23162428 tgctgcctggcctgcatgctcccctgcggcgccctcgacgtcgtccgcgtcgtgcacctc 23162487 Query: 166 agcggccgcgtcgaggagt 184 |||||||||||||| |||| Sbjct: 23162488 agcggccgcgtcgacgagt 23162506 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 278 tcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatccc 332 ||||||| |||||||| |||||||| ||||||||| || |||||||||||||| Sbjct: 23162624 tcatcgtgtccccggactccgagctcaagcgcggccgcatctacttcctcatccc 23162678 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ggccggtcgccgccggcgag 210 |||||||||||||||||||| Sbjct: 23264508 ggccggtcgccgccggcgag 23264489 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 ccgtcggcggcgaaccctgg 425 |||||||||||||||||||| Sbjct: 15458412 ccgtcggcggcgaaccctgg 15458431
>ref|XM_475657.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 513 Score = 210 bits (106), Expect = 4e-51 Identities = 151/166 (90%) Strand = Plus / Plus Query: 88 atgggcaatagcttgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctg 147 |||||||| ||| |||| |||||||| |||||||| |||||||||||||| || |||||| Sbjct: 1 atgggcaacagcctgagatgctgcctagcttgcgtcctcccctgcggcgccctcgacctg 60 Query: 148 atcaggatcgtccacctcagcggccgcgtcgaggagtacggccggccggtcgccgccggc 207 ||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||| Sbjct: 61 atcaggatcgtccacctcaacggccgcgtcgaggagtacgggcgcccggtcgccgccggc 120 Query: 208 gagatcctctccgctaacccaaaccacgtgctgagcaagccgtgct 253 ||||||||| |||| ||||| |||||||| || ||||||||||||| Sbjct: 121 gagatcctcgccgccaaccccaaccacgtcctcagcaagccgtgct 166 Score = 97.6 bits (49), Expect = 4e-17 Identities = 67/73 (91%) Strand = Plus / Plus Query: 277 ctcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcccggcg 336 ||||||||||| ||||| |||||||||||||||||| |||| ||||||||||||||||| Sbjct: 205 ctcatcgtctcgccggactccgagctggagcgcggcgagatctacttcctcatcccggcc 264 Query: 337 tcctcggtgccgg 349 ||||| ||||||| Sbjct: 265 tcctccgtgccgg 277 Score = 81.8 bits (41), Expect = 2e-12 Identities = 74/85 (87%) Strand = Plus / Plus Query: 510 gtcgttgcaccggcgacgagtgagcaccggcggccggaccgtcgtgtggaggccacacct 569 ||||||||||||||| || ||||| ||||| ||||||| | | ||||||||||||||| Sbjct: 429 gtcgttgcaccggcggcgcatgagcgccggcagccggacggcggcgtggaggccacacct 488 Query: 570 cgagtgcatcgtggagggcacttga 594 |||||||||||| |||| ||||||| Sbjct: 489 cgagtgcatcgtagaggacacttga 513
>ref|NM_184511.1| Oryza sativa (japonica cultivar-group), mRNA Length = 513 Score = 149 bits (75), Expect = 1e-32 Identities = 197/238 (82%), Gaps = 6/238 (2%) Strand = Plus / Plus Query: 101 tgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctgatcaggatcgtcc 160 |||| ||||||||||| |||||||| || |||||||||||||||||| || ||||||| | Sbjct: 14 tgagatgctgcctggcgtgcgtgctgccgtgcggcgcgctggacctggtccggatcgtgc 73 Query: 161 acctcagcggccgcgtcgaggagtacggccggccggtcgccgccggcgagatcctctccg 220 ||||||||||||||||||| ||||||||||| | || ||||||||||| | || | | Sbjct: 74 acctcagcggccgcgtcgacgagtacggccgcgccgtgtccgccggcgaggtgctggcgg 133 Query: 221 ctaacccaaaccacgtgctgagcaagccgtgctc------gcagggcgtcgtgcggagga 274 | |||| |||||||| |||||| ||||||||| |||||| | | | || ||| Sbjct: 134 cgcaccccaaccacgttctgagccggccgtgctcgtcgcagcagggggcggcggggcgga 193 Query: 275 tactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatccc 332 |||||||||| || |||||||| ||||||||||||||| |||| |||||||||||||| Sbjct: 194 tactcatcgtgtcgccggagtcggagctggagcgcggcgagatctacttcctcatccc 251
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 149 bits (75), Expect = 1e-32 Identities = 197/238 (82%), Gaps = 6/238 (2%) Strand = Plus / Plus Query: 101 tgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctgatcaggatcgtcc 160 |||| ||||||||||| |||||||| || |||||||||||||||||| || ||||||| | Sbjct: 3375606 tgagatgctgcctggcgtgcgtgctgccgtgcggcgcgctggacctggtccggatcgtgc 3375665 Query: 161 acctcagcggccgcgtcgaggagtacggccggccggtcgccgccggcgagatcctctccg 220 ||||||||||||||||||| ||||||||||| | || ||||||||||| | || | | Sbjct: 3375666 acctcagcggccgcgtcgacgagtacggccgcgccgtgtccgccggcgaggtgctggcgg 3375725 Query: 221 ctaacccaaaccacgtgctgagcaagccgtgctc------gcagggcgtcgtgcggagga 274 | |||| |||||||| |||||| ||||||||| |||||| | | | || ||| Sbjct: 3375726 cgcaccccaaccacgttctgagccggccgtgctcgtcgcagcagggggcggcggggcgga 3375785 Query: 275 tactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatccc 332 |||||||||| || |||||||| ||||||||||||||| |||| |||||||||||||| Sbjct: 3375786 tactcatcgtgtcgccggagtcggagctggagcgcggcgagatctacttcctcatccc 3375843 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Minus Query: 88 atgggcaatagcttgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctg 147 |||||||| ||| || ||||||||||||| ||||| ||||||||||| ||||| ||| | Sbjct: 35372792 atgggcaacagcctgcggtgctgcctggcctgcgtcctcccctgcggagcgctcgacgtc 35372733 Query: 148 atcaggatcgtccacctcagcggccgcgtcgaggagtacggccggccggtcgccgccggc 207 || | ||||||||||||||||||| |||||| |||| | || | |||||| |||||||| Sbjct: 35372732 gtccgcatcgtccacctcagcggccacgtcgacgagttcagctgcccggtcaccgccggc 35372673 Query: 208 gagatcctctccgctaacccaaaccac 234 | ||||| ||||| |||| |||||| Sbjct: 35372672 gccgtcctcgccgctcaccccaaccac 35372646 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 278 tcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatccc 332 |||||||||| || || |||||||| ||||||||| || |||||||||||||| Sbjct: 35372590 tcatcgtctcgcccgactccgagctcaagcgcggccgcatctacttcctcatccc 35372536 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 ccggccggtcgccgccggcga 209 ||||||||||||||||||||| Sbjct: 6395817 ccggccggtcgccgccggcga 6395837 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gccggtcgccgccggcgaga 211 |||||||||||||||||||| Sbjct: 20208902 gccggtcgccgccggcgaga 20208883
>dbj|AP003301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0701D05 Length = 172161 Score = 149 bits (75), Expect = 1e-32 Identities = 197/238 (82%), Gaps = 6/238 (2%) Strand = Plus / Plus Query: 101 tgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctgatcaggatcgtcc 160 |||| ||||||||||| |||||||| || |||||||||||||||||| || ||||||| | Sbjct: 53976 tgagatgctgcctggcgtgcgtgctgccgtgcggcgcgctggacctggtccggatcgtgc 54035 Query: 161 acctcagcggccgcgtcgaggagtacggccggccggtcgccgccggcgagatcctctccg 220 ||||||||||||||||||| ||||||||||| | || ||||||||||| | || | | Sbjct: 54036 acctcagcggccgcgtcgacgagtacggccgcgccgtgtccgccggcgaggtgctggcgg 54095 Query: 221 ctaacccaaaccacgtgctgagcaagccgtgctc------gcagggcgtcgtgcggagga 274 | |||| |||||||| |||||| ||||||||| |||||| | | | || ||| Sbjct: 54096 cgcaccccaaccacgttctgagccggccgtgctcgtcgcagcagggggcggcggggcgga 54155 Query: 275 tactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatccc 332 |||||||||| || |||||||| ||||||||||||||| |||| |||||||||||||| Sbjct: 54156 tactcatcgtgtcgccggagtcggagctggagcgcggcgagatctacttcctcatccc 54213
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 103 bits (52), Expect = 7e-19 Identities = 154/188 (81%) Strand = Plus / Plus Query: 88 atgggcaatagcttgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctg 147 |||||||| ||| |||| ||||||||||| ||||| |||||||||||| | | ||| || Sbjct: 10424236 atgggcaacagcctgagatgctgcctggcctgcgtcctcccctgcggctccttcgacgtg 10424295 Query: 148 atcaggatcgtccacctcagcggccgcgtcgaggagtacggccggccggtcgccgccggc 207 || | ||||||||||||| ||||| | |||||||||||| || |||||| |||||||| Sbjct: 10424296 gtccgcatcgtccacctcaacggccacatcgaggagtacgcgcgcccggtcaccgccggc 10424355 Query: 208 gagatcctctccgctaacccaaaccacgtgctgagcaagccgtgctcgcagggcgtcgtg 267 ||| || || |||| |||| | |||||| |||||| ||||||||| ||||||| || | Sbjct: 10424356 gaggtcgtcgccgcgcacccgagccacgtcctgagccggccgtgctcccagggcggcgcg 10424415 Query: 268 cggaggat 275 ||| |||| Sbjct: 10424416 cggcggat 10424423 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||||||||| |||| ||||||||||||| Sbjct: 18460161 ggatacacatcgtgtcgccggagtcgaagctggagcgcggcgagatctacttcctcatcc 18460220 Query: 332 cggc 335 |||| Sbjct: 18460221 cggc 18460224
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 103 bits (52), Expect = 7e-19 Identities = 154/188 (81%) Strand = Plus / Plus Query: 88 atgggcaatagcttgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctg 147 |||||||| ||| |||| ||||||||||| ||||| |||||||||||| | | ||| || Sbjct: 80789 atgggcaacagcctgagatgctgcctggcctgcgtcctcccctgcggctccttcgacgtg 80848 Query: 148 atcaggatcgtccacctcagcggccgcgtcgaggagtacggccggccggtcgccgccggc 207 || | ||||||||||||| ||||| | |||||||||||| || |||||| |||||||| Sbjct: 80849 gtccgcatcgtccacctcaacggccacatcgaggagtacgcgcgcccggtcaccgccggc 80908 Query: 208 gagatcctctccgctaacccaaaccacgtgctgagcaagccgtgctcgcagggcgtcgtg 267 ||| || || |||| |||| | |||||| |||||| ||||||||| ||||||| || | Sbjct: 80909 gaggtcgtcgccgcgcacccgagccacgtcctgagccggccgtgctcccagggcggcgcg 80968 Query: 268 cggaggat 275 ||| |||| Sbjct: 80969 cggcggat 80976
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 103 bits (52), Expect = 7e-19 Identities = 154/188 (81%) Strand = Plus / Plus Query: 88 atgggcaatagcttgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctg 147 |||||||| ||| |||| ||||||||||| ||||| |||||||||||| | | ||| || Sbjct: 10422337 atgggcaacagcctgagatgctgcctggcctgcgtcctcccctgcggctccttcgacgtg 10422396 Query: 148 atcaggatcgtccacctcagcggccgcgtcgaggagtacggccggccggtcgccgccggc 207 || | ||||||||||||| ||||| | |||||||||||| || |||||| |||||||| Sbjct: 10422397 gtccgcatcgtccacctcaacggccacatcgaggagtacgcgcgcccggtcaccgccggc 10422456 Query: 208 gagatcctctccgctaacccaaaccacgtgctgagcaagccgtgctcgcagggcgtcgtg 267 ||| || || |||| |||| | |||||| |||||| ||||||||| ||||||| || | Sbjct: 10422457 gaggtcgtcgccgcgcacccgagccacgtcctgagccggccgtgctcccagggcggcgcg 10422516 Query: 268 cggaggat 275 ||| |||| Sbjct: 10422517 cggcggat 10422524 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||||||||| |||| ||||||||||||| Sbjct: 18454202 ggatacacatcgtgtcgccggagtcgaagctggagcgcggcgagatctacttcctcatcc 18454261 Query: 332 cggc 335 |||| Sbjct: 18454262 cggc 18454265
>ref|NM_190413.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 516 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Plus Query: 88 atgggcaatagcttgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctg 147 |||||||| ||| || ||||||||||||| ||||| ||||||||||| ||||| ||| | Sbjct: 1 atgggcaacagcctgcggtgctgcctggcctgcgtcctcccctgcggagcgctcgacgtc 60 Query: 148 atcaggatcgtccacctcagcggccgcgtcgaggagtacggccggccggtcgccgccggc 207 || | ||||||||||||||||||| |||||| |||| | || | |||||| |||||||| Sbjct: 61 gtccgcatcgtccacctcagcggccacgtcgacgagttcagctgcccggtcaccgccggc 120 Query: 208 gagatcctctccgctaacccaaaccac 234 | ||||| ||||| |||| |||||| Sbjct: 121 gccgtcctcgccgctcaccccaaccac 147 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 278 tcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatccc 332 |||||||||| || || |||||||| ||||||||| || |||||||||||||| Sbjct: 203 tcatcgtctcgcccgactccgagctcaagcgcggccgcatctacttcctcatccc 257
>dbj|AP003315.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0439E11 Length = 146083 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Minus Query: 88 atgggcaatagcttgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctg 147 |||||||| ||| || ||||||||||||| ||||| ||||||||||| ||||| ||| | Sbjct: 136653 atgggcaacagcctgcggtgctgcctggcctgcgtcctcccctgcggagcgctcgacgtc 136594 Query: 148 atcaggatcgtccacctcagcggccgcgtcgaggagtacggccggccggtcgccgccggc 207 || | ||||||||||||||||||| |||||| |||| | || | |||||| |||||||| Sbjct: 136593 gtccgcatcgtccacctcagcggccacgtcgacgagttcagctgcccggtcaccgccggc 136534 Query: 208 gagatcctctccgctaacccaaaccac 234 | ||||| ||||| |||| |||||| Sbjct: 136533 gccgtcctcgccgctcaccccaaccac 136507 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Minus Query: 278 tcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatccc 332 |||||||||| || || |||||||| ||||||||| || |||||||||||||| Sbjct: 136451 tcatcgtctcgcccgactccgagctcaagcgcggccgcatctacttcctcatccc 136397
>dbj|AK111090.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G01, full insert sequence Length = 894 Score = 93.7 bits (47), Expect = 6e-16 Identities = 122/147 (82%) Strand = Plus / Plus Query: 88 atgggcaatagcttgaggtgctgcctggcttgcgtgctcccctgcggcgcgctggacctg 147 |||||||| ||| || ||||||||||||| ||||| ||||||||||| ||||| ||| | Sbjct: 94 atgggcaacagcctgcggtgctgcctggcctgcgtcctcccctgcggagcgctcgacgtc 153 Query: 148 atcaggatcgtccacctcagcggccgcgtcgaggagtacggccggccggtcgccgccggc 207 || | ||||||||||||||||||| |||||| |||| | || | |||||| |||||||| Sbjct: 154 gtccgcatcgtccacctcagcggccacgtcgacgagttcagctgcccggtcaccgccggc 213 Query: 208 gagatcctctccgctaacccaaaccac 234 | ||||| ||||| |||| |||||| Sbjct: 214 gccgtcctcgccgctcaccccaaccac 240 Score = 46.1 bits (23), Expect = 0.13 Identities = 47/55 (85%) Strand = Plus / Plus Query: 278 tcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatccc 332 |||||||||| || || |||||||| ||||||||| || |||||||||||||| Sbjct: 296 tcatcgtctcgcccgactccgagctcaagcgcggccgcatctacttcctcatccc 350
>ref|NM_184654.1| Oryza sativa (japonica cultivar-group), mRNA Length = 438 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||||||||| |||| ||||||||||||| Sbjct: 170 ggatacacatcgtgtcgccggagtcgaagctggagcgcggcgagatctacttcctcatcc 229 Query: 332 cggc 335 |||| Sbjct: 230 cggc 233
>gb|AC097367.3| Oryza sativa chromosome 3 BAC OSJNBa0051C19 genomic sequence, complete sequence Length = 90673 Score = 71.9 bits (36), Expect = 2e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||||||||| |||| ||||||||||||| Sbjct: 21054 ggatacacatcgtgtcgccggagtcgaagctggagcgcggcgagatctacttcctcatcc 20995 Query: 332 cggc 335 |||| Sbjct: 20994 cggc 20991
>ref|XM_474003.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 480 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||| ||||| |||| ||||||||||||| Sbjct: 272 ggatacacatcgtgtcgccggagtcgaagctggagtgcggcgagatctacttcctcatcc 213 Query: 332 cggc 335 |||| Sbjct: 212 cggc 209
>emb|AL606650.5|OSJN00097 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015D13, complete sequence Length = 127135 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||| ||||| |||| ||||||||||||| Sbjct: 13208 ggatacacatcgtgtcgccggagtcgaagctggagtgcggcgagatctacttcctcatcc 13267 Query: 332 cggc 335 |||| Sbjct: 13268 cggc 13271
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||| ||||| |||| ||||||||||||| Sbjct: 32117519 ggatacacatcgtgtcgccggagtcgaagctggagtgcggcgagatctacttcctcatcc 32117578 Query: 332 cggc 335 |||| Sbjct: 32117579 cggc 32117582
>dbj|AK108022.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-136-A04, full insert sequence Length = 702 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||| ||||| |||| ||||||||||||| Sbjct: 320 ggatacacatcgtgtcgccggagtcgaagctggagtgcggcgagatctacttcctcatcc 379 Query: 332 cggc 335 |||| Sbjct: 380 cggc 383
>emb|AL732334.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0323C08, complete sequence Length = 94903 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||| ||||| |||| ||||||||||||| Sbjct: 89155 ggatacacatcgtgtcgccggagtcgaagctggagtgcggcgagatctacttcctcatcc 89214 Query: 332 cggc 335 |||| Sbjct: 89215 cggc 89218
>emb|AL732336.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0105C05, complete sequence Length = 62215 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||| ||||| |||| ||||||||||||| Sbjct: 916 ggatacacatcgtgtcgccggagtcgaagctggagtgcggcgagatctacttcctcatcc 975 Query: 332 cggc 335 |||| Sbjct: 976 cggc 979
>emb|AL662988.4|OSJN00186 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089N06, complete sequence Length = 141752 Score = 63.9 bits (32), Expect = 6e-07 Identities = 56/64 (87%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| |||||||| ||||| |||| ||||||||||||| Sbjct: 138226 ggatacacatcgtgtcgccggagtcgaagctggagtgcggcgagatctacttcctcatcc 138285 Query: 332 cggc 335 |||| Sbjct: 138286 cggc 138289
>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01, complete sequence Length = 146432 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 106 tgctgcctggcttgcgtgctcccctgcggcgcgctggacctgatcaggatcgtccacctc 165 ||||||||||| ||| |||||||||||||||| || ||| | || | |||| |||||| Sbjct: 94203 tgctgcctggcctgcatgctcccctgcggcgccctcgacgtcgtccgcgtcgtgcacctc 94262 Query: 166 agcggccgcgtcgaggagt 184 |||||||||||||| |||| Sbjct: 94263 agcggccgcgtcgacgagt 94281 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 278 tcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatccc 332 ||||||| |||||||| |||||||| ||||||||| || |||||||||||||| Sbjct: 94399 tcatcgtgtccccggactccgagctcaagcgcggccgcatctacttcctcatccc 94453
>dbj|AK109305.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-E04, full insert sequence Length = 744 Score = 61.9 bits (31), Expect = 2e-06 Identities = 67/79 (84%) Strand = Plus / Plus Query: 106 tgctgcctggcttgcgtgctcccctgcggcgcgctggacctgatcaggatcgtccacctc 165 ||||||||||| ||| |||||||||||||||| || ||| | || | |||| |||||| Sbjct: 128 tgctgcctggcctgcatgctcccctgcggcgccctcgacgtcgtccgcgtcgtgcacctc 187 Query: 166 agcggccgcgtcgaggagt 184 |||||||||||||| |||| Sbjct: 188 agcggccgcgtcgacgagt 206 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 278 tcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatccc 332 ||||||| |||||||| |||||||| ||||||||| || |||||||||||||| Sbjct: 324 tcatcgtgtccccggactccgagctcaagcgcggccgcatctacttcctcatccc 378
>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0078F08, complete sequence Length = 165440 Score = 56.0 bits (28), Expect = 1e-04 Identities = 56/64 (87%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| ||||||||| |||| |||| ||||||||||||| Sbjct: 70065 ggatacacatcgtgtcgccggagtcgaagctggagc-cggcgagatctacttcctcatcc 70123 Query: 332 cggc 335 |||| Sbjct: 70124 cggc 70127
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 56.0 bits (28), Expect = 1e-04 Identities = 56/64 (87%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| ||||||||| |||| |||| ||||||||||||| Sbjct: 18490750 ggatacacatcgtgtcgccggagtcgaagctggagc-cggcgagatctacttcctcatcc 18490808 Query: 332 cggc 335 |||| Sbjct: 18490809 cggc 18490812 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gccggtcgccgccggcgaga 211 |||||||||||||||||||| Sbjct: 27146890 gccggtcgccgccggcgaga 27146909 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gccggtcgccgccggcgaga 211 |||||||||||||||||||| Sbjct: 12115044 gccggtcgccgccggcgaga 12115025
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 56.0 bits (28), Expect = 1e-04 Identities = 56/64 (87%), Gaps = 1/64 (1%) Strand = Plus / Plus Query: 272 ggatactcatcgtctccccggagtccgagctggagcgcggccagatatacttcctcatcc 331 |||||| |||||| || |||||||| ||||||||| |||| |||| ||||||||||||| Sbjct: 18650151 ggatacacatcgtgtcgccggagtcgaagctggagc-cggcgagatctacttcctcatcc 18650209 Query: 332 cggc 335 |||| Sbjct: 18650210 cggc 18650213 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gccggtcgccgccggcgaga 211 |||||||||||||||||||| Sbjct: 27473943 gccggtcgccgccggcgaga 27473962 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gccggtcgccgccggcgaga 211 |||||||||||||||||||| Sbjct: 12194351 gccggtcgccgccggcgaga 12194332
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 239 tgagcaagccgtgctcgcagggcgtc 264 ||||||||||||||||| |||||||| Sbjct: 3978625 tgagcaagccgtgctcgaagggcgtc 3978650
>gb|DQ397625.1| Cenarchaeum symbiosum clone C20B06, complete sequence Length = 45713 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 111 cctggcttgcgtgctcccctgcggc 135 |||||||||||||||||||| |||| Sbjct: 5398 cctggcttgcgtgctcccctccggc 5422
>gb|AC163760.3| Pan troglodytes BAC clone CH251-180O13 from chromosome unknown, complete sequence Length = 174147 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 ctaggctagctctgagcctag 61 ||||||||||||||||||||| Sbjct: 59400 ctaggctagctctgagcctag 59380
>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665D10 Length = 134967 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 ccggccggtcgccgccggcga 209 ||||||||||||||||||||| Sbjct: 18212 ccggccggtcgccgccggcga 18232
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0515G01 Length = 175072 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 189 ccggccggtcgccgccggcga 209 ||||||||||||||||||||| Sbjct: 166883 ccggccggtcgccgccggcga 166903
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 tggccacggcggcaagacccg 443 ||||||||||||||||||||| Sbjct: 2288532 tggccacggcggcaagacccg 2288552
>ref|XM_482849.1| Oryza sativa (japonica cultivar-group), mRNA Length = 888 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gccggccggtcgccgccggc 207 |||||||||||||||||||| Sbjct: 803 gccggccggtcgccgccggc 784
>gb|AC117264.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1005_D04, complete sequence Length = 168424 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 ccgtcggcggcgaaccctgg 425 |||||||||||||||||||| Sbjct: 113433 ccgtcggcggcgaaccctgg 113452
>gb|AC148235.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone P0036H01, complete sequence Length = 182504 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gccggtcgccgccggcgaga 211 |||||||||||||||||||| Sbjct: 53028 gccggtcgccgccggcgaga 53047
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 503 agaagaggtcgttgcaccgg 522 |||||||||||||||||||| Sbjct: 2641614 agaagaggtcgttgcaccgg 2641633
>gb|AC144743.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0009H09, complete sequence Length = 148740 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 ggccggtcgccgccggcgag 210 |||||||||||||||||||| Sbjct: 88565 ggccggtcgccgccggcgag 88546
>gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0047M04, complete sequence Length = 109523 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gccggtcgccgccggcgaga 211 |||||||||||||||||||| Sbjct: 97943 gccggtcgccgccggcgaga 97962
>gb|AC074196.14| Oryza sativa chromosome 10 BAC OSJNBa0040D23 genomic sequence, complete sequence Length = 134102 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccggtcgccgccggcgagat 212 |||||||||||||||||||| Sbjct: 55540 ccggtcgccgccggcgagat 55521
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 agacaccgtcggcggcgaac 420 |||||||||||||||||||| Sbjct: 332645 agacaccgtcggcggcgaac 332664
>tpg|BK000940.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M332, complete sequence Length = 14546 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gccggtcgccgccggcgaga 211 |||||||||||||||||||| Sbjct: 8651 gccggtcgccgccggcgaga 8632
>gb|AC151987.4| Mus musculus BAC clone RP23-356C20 from chromosome 17, complete sequence Length = 245262 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 agaggaagaagaagaccggc 372 |||||||||||||||||||| Sbjct: 104693 agaggaagaagaagaccggc 104712
>emb|AL929602.3|CNS08CCH Human chromosome 14 DNA sequence BAC C-2314B22 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 137135 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 427 cacggcggcaagacccgtag 446 |||||||||||||||||||| Sbjct: 131396 cacggcggcaagacccgtag 131377
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 ccggccggtcgccgccggcg 208 |||||||||||||||||||| Sbjct: 950668 ccggccggtcgccgccggcg 950649
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cagcggccgcgtcgaggagt 184 |||||||||||||||||||| Sbjct: 9579585 cagcggccgcgtcgaggagt 9579566
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccggtcgccgccggcgagat 212 |||||||||||||||||||| Sbjct: 20415392 ccggtcgccgccggcgagat 20415373
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 gccggccggtcgccgccggc 207 |||||||||||||||||||| Sbjct: 22920448 gccggccggtcgccgccggc 22920467
>gb|AC128656.9| Homo sapiens 3 BAC RP13-651H24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 80993 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 cttgatagttcactacctag 609 |||||||||||||||||||| Sbjct: 38470 cttgatagttcactacctag 38451
>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0051H17 Length = 187471 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gccggtcgccgccggcgaga 211 |||||||||||||||||||| Sbjct: 115280 gccggtcgccgccggcgaga 115261
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 186 cggccggccggtcgccgccg 205 |||||||||||||||||||| Sbjct: 21660 cggccggccggtcgccgccg 21679
>gb|AC128653.5| Homo sapiens 3 BAC RP11-154P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160788 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 cttgatagttcactacctag 609 |||||||||||||||||||| Sbjct: 5477 cttgatagttcactacctag 5458
>dbj|AP006461.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0104B02 Length = 169588 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 gccggccggtcgccgccggc 207 |||||||||||||||||||| Sbjct: 94286 gccggccggtcgccgccggc 94305
>dbj|AK121788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094F11, full insert sequence Length = 1930 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cagcggccgcgtcgaggagt 184 |||||||||||||||||||| Sbjct: 483 cagcggccgcgtcgaggagt 464
>dbj|AK108155.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-139-G06, full insert sequence Length = 924 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 ccgtcggcggcgaaccctgg 425 |||||||||||||||||||| Sbjct: 101 ccgtcggcggcgaaccctgg 82
>dbj|AK073548.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C05, full insert sequence Length = 1078 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 191 ggccggtcgccgccggcgag 210 |||||||||||||||||||| Sbjct: 777 ggccggtcgccgccggcgag 796
>dbj|AK071599.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023107I12, full insert sequence Length = 1906 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cagcggccgcgtcgaggagt 184 |||||||||||||||||||| Sbjct: 1111 cagcggccgcgtcgaggagt 1130
>dbj|AK068850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169H09, full insert sequence Length = 3543 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccggtcgccgccggcgagat 212 |||||||||||||||||||| Sbjct: 18 ccggtcgccgccggcgagat 37
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 401 agacaccgtcggcggcgaac 420 |||||||||||||||||||| Sbjct: 344722 agacaccgtcggcggcgaac 344741
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccggtcgccgccggcgagat 212 |||||||||||||||||||| Sbjct: 20426664 ccggtcgccgccggcgagat 20426645
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cagcggccgcgtcgaggagt 184 |||||||||||||||||||| Sbjct: 9579470 cagcggccgcgtcgaggagt 9579451
>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165137 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 165 cagcggccgcgtcgaggagt 184 |||||||||||||||||||| Sbjct: 42896 cagcggccgcgtcgaggagt 42877 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,397,105 Number of Sequences: 3902068 Number of extensions: 4397105 Number of successful extensions: 102258 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 69 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 100291 Number of HSP's gapped (non-prelim): 1964 length of query: 609 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 586 effective length of database: 17,143,297,704 effective search space: 10045972454544 effective search space used: 10045972454544 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
