ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16e11 |
|---|---|
| Clone Library Name | barley_pub |
>K1043_HUMAN (Q96AY4) TPR repeat-containing protein KIAA1043| Length = 1716 Score = 37.4 bits (85), Expect = 0.034 Identities = 27/101 (26%), Positives = 45/101 (44%) Frame = +1 Query: 232 EDVSKPMMPPARLISAGQRSEPSSQSHLHYIKTTEREGGALSSSQMPARPTQRHGSCSSA 411 ++ S P + P L Q+ +QSHL ++ +R GG +S S P Q S + Sbjct: 1385 QEESNPKLDPQEL---AQKILEETQSHLIAVERLQRSGGQVSKSNNPEDGVQAPSSTAVF 1441 Query: 412 SAKISYGENDSVNSHSFQGQRDPASQMPRPKEQPGSVMDIS 534 A + + V SH + Q P + P+P + S+ +S Sbjct: 1442 RASETSAFSRPVLSHQ-KSQPSPVTVKPKPPARSSSLPKVS 1481
>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting| gene 1) (Rig-1) Length = 1366 Score = 32.7 bits (73), Expect = 0.84 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 6/90 (6%) Frame = +1 Query: 334 EREGGALSSSQMPARPTQRH--GSCSSASAKISYGENDSVNSHSFQGQRDPASQMPRPKE 507 E +G + P P + H GS SS + ++ D+ + S GQ+ A+ P P + Sbjct: 1103 ELKGSSDLEEWCPPVPEKSHLVGSSSSGACMVAPAPRDTPSPTSSYGQQSTATLTPSPPD 1162 Query: 508 QPGSVMDISFPPGHPRSIFL----PLSLKQ 585 P DI PR + L PLS+ Q Sbjct: 1163 PPQPPTDIPHLHQMPRRVPLGPSSPLSVSQ 1192
>CCNT1_MOUSE (Q9QWV9) Cyclin-T1 (Cyclin-T) (CycT1)| Length = 724 Score = 32.7 bits (73), Expect = 0.84 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 1/120 (0%) Frame = +1 Query: 205 LKQHWSGSLEDVSKPMMPPARLISAGQRSEPSSQSHLHYIKTTEREGGALSSSQMPARPT 384 +K H +G + + + +R QR+ PS+ H H + L + + RP+ Sbjct: 483 IKVHSAGDKHNSIEDSVTKSREHKEKQRTHPSNHHHHHNHHSHRHSHLQLPAGPVSKRPS 542 Query: 385 Q-RHGSCSSASAKISYGENDSVNSHSFQGQRDPASQMPRPKEQPGSVMDISFPPGHPRSI 561 +H S +S A +Y + +++S S +R P P+E +V D HP I Sbjct: 543 DPKHSSQTSTLAHKTYSLSSTLSSSSSTRKRGP------PEETGAAVFD------HPAKI 590
>CHD2_HUMAN (O14647) Chromodomain-helicase-DNA-binding protein 2 (EC 3.6.1.-)| (ATP-dependent helicase CHD2) (CHD-2) Length = 1739 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/74 (28%), Positives = 39/74 (52%) Frame = +1 Query: 298 SSQSHLHYIKTTEREGGALSSSQMPARPTQRHGSCSSASAKISYGENDSVNSHSFQGQRD 477 ++ SH + + + G+ S S+ + P HGS S++S++ S +++S S S + Sbjct: 18 NASSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSES-ESESAGSKSQ 76 Query: 478 PASQMPRPKEQPGS 519 P +P KE+P S Sbjct: 77 PV--LPEAKEKPAS 88
>SMAD6_HUMAN (O43541) Mothers against decapentaplegic homolog 6 (SMAD 6)| (Mothers against DPP homolog 6) (Smad6) (hSMAD6) Length = 496 Score = 31.2 bits (69), Expect = 2.4 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 9/78 (11%) Frame = +1 Query: 340 EGGALSSSQMPARPTQRHGSCSSASAK--ISYGENDSVNSHSFQG--QRDPASQMPRPKE 507 E G+L S PA + G C + + D+V QG +R A PRP Sbjct: 35 EDGSLGSRAEPAPRAREGGGCGRSEVRPVAPRRPRDAVGQRGAQGAGRRRRAGGPPRPMS 94 Query: 508 QPG-----SVMDISFPPG 546 +PG S++D++ P G Sbjct: 95 EPGAGAGSSLLDVAEPGG 112
>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor| Length = 660 Score = 31.2 bits (69), Expect = 2.4 Identities = 32/137 (23%), Positives = 53/137 (38%), Gaps = 8/137 (5%) Frame = +1 Query: 199 EWLKQHWSGSLEDVSKPMMPPARLISAGQRSEPSSQSHLHYIKTTER-----EGGALSSS 363 +W + ++ S + + + P GQ + HY + ++ +G L+S Sbjct: 244 QWQQGYYPTSPQQLGQGQQP-------GQWQQSGQGQQGHYPTSLQQPGQGQQGHYLASQ 296 Query: 364 QMPARPTQRHGSCSSAS-AKISYGENDSVNSHSFQGQRD--PASQMPRPKEQPGSVMDIS 534 Q PA+ Q H S + G + QGQ+ PASQ + Q G + Sbjct: 297 QQPAQGQQGHYPASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQQEPGQGQQGQIPASQ 356 Query: 535 FPPGHPRSIFLPLSLKQ 585 PG + P SL+Q Sbjct: 357 QQPGQGQQGHYPASLQQ 373
>DPOLA_LEIDO (O00874) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1339 Score = 30.8 bits (68), Expect = 3.2 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 10/87 (11%) Frame = +1 Query: 289 SEPSSQSHLHYIKTTEREGG-----ALSSSQMPARPTQRHGS--CSSASAKISYGENDSV 447 +E SHL + + +GG L++ + AR + + S A K GEN +V Sbjct: 109 AEDIDMSHLLQLHSDSDDGGDAQEATLTADEFLARLARAEAAPAASIAKEKRESGENVTV 168 Query: 448 ---NSHSFQGQRDPASQMPRPKEQPGS 519 F +RD +++ PRP+ PG+ Sbjct: 169 VALKDELFNVERDQSAKPPRPRPTPGA 195
>JPH2_MOUSE (Q9ET78) Junctophilin-2 (Junctophilin type 2) (JP-2)| Length = 696 Score = 30.8 bits (68), Expect = 3.2 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +1 Query: 229 LEDVSKPMMPPARLISAGQRSEPSSQSHLHYIKTTEREGGALSSSQMPARP 381 LE+ + PP R + G P LH +T + EGG S + P +P Sbjct: 437 LENSESLLEPPERGLGTGLPERPRESPQLHERETPQPEGGPPSPAGTPPQP 487
>ADA1B_MOUSE (P97717) Alpha-1B adrenergic receptor (Alpha 1B-adrenoceptor)| (Alpha 1B-adrenoreceptor) Length = 514 Score = 30.8 bits (68), Expect = 3.2 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +1 Query: 343 GGALSSSQMPARPTQRHGSCSSASAKISYGENDSVNSHSFQGQRDPASQMPRPKEQPGSV 522 GG+L SQ GSC S S + + S + +G + P P+ +PG++ Sbjct: 391 GGSLERSQSRKDSLDDSGSCMSGSQRTLPSASPSPG-YLGRGTQPPVELCAFPEWKPGAL 449 Query: 523 MDISFPPG 546 + + PPG Sbjct: 450 LSLPEPPG 457
>HRS_DROME (Q960X8) Hepatocyte growth factor-regulated tyrosine kinase| substrate Length = 760 Score = 30.8 bits (68), Expect = 3.2 Identities = 30/104 (28%), Positives = 38/104 (36%), Gaps = 1/104 (0%) Frame = +1 Query: 247 PMMPPARLISAGQRSEPSSQSHLHYIKTTEREGGALSSSQMPARPTQRHGSCSSASAKIS 426 P MPP+ + Q PS Q + Y G L Q PA HG + Sbjct: 534 PYMPPS---AVPQHGSPSHQLNNVYNPYAAGVPGYLP--QGPAPAPNGHGQFQAIPP--- 585 Query: 427 YGENDSVNSHSFQGQRDPASQMPRPKE-QPGSVMDISFPPGHPR 555 G +PA Q P P QPG +M PPG+P+ Sbjct: 586 -------------GMYNPAIQQPMPPNLQPGGLMQQPAPPGNPQ 616
>NCOA3_XENLA (O57539) Nuclear receptor coactivator 3 (EC 2.3.1.48) (Retinoid X| receptor-interacting coactivator xSRC-3) Length = 1391 Score = 30.0 bits (66), Expect = 5.4 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Frame = +1 Query: 274 SAGQRSEPSSQSHLHYIK-----TTEREGGALSSSQMPARPTQRHGSCSSASAKISYGEN 438 S QRS+ S+ H ++ T ER +SSS M + + S S S+ S G + Sbjct: 604 SESQRSQAESKGHKKLLQLLTCFTEERGQSLMSSSSMDCKDSSNVTSPSGVSSSTSIGVS 663 Query: 439 DSVNSH 456 + N H Sbjct: 664 STSNLH 669
>PHF12_MOUSE (Q5SPL2) PHD finger protein 12 (PHD factor 1) (Pf1)| Length = 1003 Score = 30.0 bits (66), Expect = 5.4 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 5/105 (4%) Frame = +1 Query: 244 KPMMPPARLISAGQRSEPSSQSHLHYIKTTEREGGALSSSQ-----MPARPTQRHGSCSS 408 +P+ PP SAG Q+H+ I TE G S Q +P+ P SC+S Sbjct: 583 RPLTPP----SAG-----GLQNHVGIIVKTENATGPSSCPQRSLVPVPSLPPSIPSSCAS 633 Query: 409 ASAKISYGENDSVNSHSFQGQRDPASQMPRPKEQPGSVMDISFPP 543 +++ + Q Q P+S RP P + + PP Sbjct: 634 IE------NTSTLHRKTVQSQIGPSSTESRPLGSPPNATRVLTPP 672
>ADA1B_RAT (P15823) Alpha-1B adrenergic receptor (Alpha 1B-adrenoceptor)| (Alpha 1B-adrenoreceptor) Length = 515 Score = 29.6 bits (65), Expect = 7.1 Identities = 18/68 (26%), Positives = 31/68 (45%) Frame = +1 Query: 343 GGALSSSQMPARPTQRHGSCSSASAKISYGENDSVNSHSFQGQRDPASQMPRPKEQPGSV 522 GG+L SQ GSC S + + + S + +G + P P+ +PG++ Sbjct: 392 GGSLERSQSRKDSLDDSGSCMSGTQRTLPSASPSPG-YLGRGTQPPVELCAFPEWKPGAL 450 Query: 523 MDISFPPG 546 + + PPG Sbjct: 451 LSLPEPPG 458
>ILVD_PHOLL (Q7MYJ5) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 616 Score = 29.6 bits (65), Expect = 7.1 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Frame = -2 Query: 275 DINRAGGIIGLLTSSKLPLQCCFNHSHTAGMGIPNCVGTSIFDARSAIDDA--EAYPVGV 102 D++RAGG+IG+L +L N +G+ + +D +D++ E Y G Sbjct: 325 DVHRAGGVIGIL--GELDRAGLLNRQVKNVLGLDLLQTLNQYDVMQTVDESVKEMYSAGP 382 Query: 101 EGASFIGSQTIKARFPCISKPADPGC 24 G + + R+P + GC Sbjct: 383 AGIRTTQAFSQDCRWPSLDTDRVEGC 408
>JPH2_HUMAN (Q9BR39) Junctophilin-2 (Junctophilin type 2) (JP-2)| Length = 696 Score = 29.3 bits (64), Expect = 9.3 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 9/118 (7%) Frame = +1 Query: 229 LEDVSKPMMPPARLISAGQRSEPSSQS-HLHYIKTTEREGGALSSSQMPARPTQRHGSCS 405 LE+ + PP R A +P +S LH +T EGG+ S + P +P + S Sbjct: 443 LENSESLLEPPDRGAGAAGLPQPPRESPQLHERETPRPEGGSPSPAGTPPQPKRPRPGVS 502 Query: 406 S---ASAKISYGENDSVNSHSF-----QGQRDPASQMPRPKEQPGSVMDISFPPGHPR 555 S GE S S G+R PA RP + ++ + PP R Sbjct: 503 KDGLLSPGAWNGEPSGEGSRSVTPSEGAGRRSPA----RPATERMAIEALQAPPAPSR 556
>DYNA_NEUCR (Q01397) Dynactin, 150 kDa isoform (150 kDa dynein-associated| polypeptide) (DP-150) (DAP-150) (p150-glued) Length = 1300 Score = 29.3 bits (64), Expect = 9.3 Identities = 24/104 (23%), Positives = 37/104 (35%) Frame = +1 Query: 220 SGSLEDVSKPMMPPARLISAGQRSEPSSQSHLHYIKTTEREGGALSSSQMPARPTQRHGS 399 SG+ +KP P R + PS + H ++ P T R S Sbjct: 97 SGTPSTTTKPAGPTTR-------TRPSLSTSRH----------SMGPPPTPTTRTTRKPS 139 Query: 400 CSSASAKISYGENDSVNSHSFQGQRDPASQMPRPKEQPGSVMDI 531 SS + S G V + R +++ P+E GSV + Sbjct: 140 VSSVGTRPSIGATRPVGGRASMSARSSTNRLSDPRESTGSVSSV 183
>CFDP1_BOVIN (Q8HXY9) Craniofacial development protein 1 (Bucentaur) (h-type| BCNT protein) Length = 297 Score = 29.3 bits (64), Expect = 9.3 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +1 Query: 217 WSGSLEDVS-KPMMPPARLISAGQRSEPSSQSHL 315 W+ L DV K +PP+ + G+ +E +S SHL Sbjct: 113 WASFLNDVGPKSKVPPSTHVKTGEETEETSSSHL 146
>ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor| Length = 1470 Score = 29.3 bits (64), Expect = 9.3 Identities = 31/107 (28%), Positives = 46/107 (42%) Frame = +1 Query: 232 EDVSKPMMPPARLISAGQRSEPSSQSHLHYIKTTEREGGALSSSQMPARPTQRHGSCSSA 411 +D +P+ P R + A ++ SS +L T G A SSSQ RPT + S+ Sbjct: 1225 DDEEEPLEIP-RPLRALDQTPGSSMDNLDSSVT----GKAFSSSQRQ-RPTSPFSTDSNT 1278 Query: 412 SAKISYGENDSVNSHSFQGQRDPASQMPRPKEQPGSVMDISFPPGHP 552 SA + + G+ DP +P +E G D+ PP P Sbjct: 1279 SAAQNQSQRPRPTKKHKGGRMDPQPVLPHRRE--GMPDDLPPPPDPP 1323
>TEP1_RAT (O08653) Telomerase protein component 1 (rTLP1)| (Telomerase-associated protein 1) (Telomerase protein 1) (p240) (p230) (p80 telomerase homolog) Length = 2629 Score = 29.3 bits (64), Expect = 9.3 Identities = 20/66 (30%), Positives = 33/66 (50%) Frame = +1 Query: 163 PTQFGIPIPAVCEWLKQHWSGSLEDVSKPMMPPARLISAGQRSEPSSQSHLHYIKTTERE 342 P + +P W +++ SG S M + ++ GQRSEPS Q+ +++ R+ Sbjct: 994 PPSYDLPDHPHFHWTQRYPSGR----SVTEMEVMQFLNRGQRSEPSDQALIYF-----RD 1044 Query: 343 GGALSS 360 G LSS Sbjct: 1045 PGFLSS 1050
>ILVD_YERPS (Q66G45) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 616 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Frame = -2 Query: 275 DINRAGGIIGLLTSSKLPLQCCFNHSHTAGMGIPNCVGTSIFDARSAIDDA--EAYPVGV 102 D++RAGG+IG+L +L N + +G+ +D D+ + Y G Sbjct: 325 DVHRAGGVIGIL--GELDRAGLLNRDVSNVLGLNLTQTLEAYDVMLTQDEGVKQMYAAGP 382 Query: 101 EGASFIGSQTIKARFPCISKPADPGCHET 15 G + + R+P + + GC T Sbjct: 383 AGIRTTKAFSQDCRYPSLDTDREEGCIRT 411
>ILVD_YERPE (Q8ZAB3) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 616 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Frame = -2 Query: 275 DINRAGGIIGLLTSSKLPLQCCFNHSHTAGMGIPNCVGTSIFDARSAIDDA--EAYPVGV 102 D++RAGG+IG+L +L N + +G+ +D D+ + Y G Sbjct: 325 DVHRAGGVIGIL--GELDRAGLLNRDVSNVLGLNLTQTLEAYDVMLTQDEGVKQMYAAGP 382 Query: 101 EGASFIGSQTIKARFPCISKPADPGCHET 15 G + + R+P + + GC T Sbjct: 383 AGIRTTKAFSQDCRYPSLDTDREEGCIRT 411
>CFDP1_MUNRE (Q4ADK4) Craniofacial development protein 1 (Bucentaur)| Length = 298 Score = 29.3 bits (64), Expect = 9.3 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%) Frame = +1 Query: 217 WSGSLEDVS-KPMMPPARLISAGQRSEPSSQSHL 315 W+ L DV K +PP+ + G+ +E +S SHL Sbjct: 114 WASFLNDVGPKSKVPPSTHVKTGEETEETSSSHL 147 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.314 0.130 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,083,124 Number of Sequences: 219361 Number of extensions: 1862371 Number of successful extensions: 3901 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3762 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3896 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits)
