ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags16e06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X81828.1|ZMCP71C1G Z.mays CYP71C1 gene for cytochrome P-450 48 0.039
2emb|X81827.1|ZMCYP71C1 Z.mays CYP71C1 mRNA for cytochrome P-450 48 0.039
3gb|AY105992.1| Zea mays PCO117584 mRNA sequence 44 0.61
4gb|AC087416.18| Mus musculus strain C57BL/6J chromosome 2 clone ... 44 0.61
5emb|AL805918.5| Mouse DNA sequence from clone RP23-191L7 on chro... 44 0.61
6gb|AC135512.6| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
7gb|AC140294.3| Mus musculus BAC clone RP23-359G16 from chromosom... 42 2.4
8gb|AC129322.3| Mus musculus BAC clone RP23-220F4 from chromosome... 42 2.4
9gb|AF321858.1|AF321858 Lolium rigidum clone BXH putative cytochr... 42 2.4
10dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
11gb|AC117498.6| Homo sapiens 12 BAC RP11-579D7 (Roswell Park Canc... 42 2.4
12gb|AC073610.17| Homo sapiens 12 BAC RP11-302B13 (Roswell Park Ca... 42 2.4
13gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.4
14gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 40 9.6
15ref|XM_479693.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.6
16ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.6
17ref|XM_479692.1| Oryza sativa (japonica cultivar-group), mRNA 40 9.6
18ref|XM_599815.2| PREDICTED: Bos taurus similar to zinc finger pr... 40 9.6
19gb|AY673603.1| Homo sapiens matrix metalloproteinase 20 (enamely... 40 9.6
20gb|BC037473.1| Mus musculus Ellis van Creveld syndrome 2 homolog... 40 9.6
21ref|XM_953936.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.6
22ref|XM_331392.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.6
23ref|NM_145920.2| Mus musculus Ellis van Creveld syndrome 2 homol... 40 9.6
24gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome 40 9.6
25emb|AL121837.33|HSJ988J12 Human DNA sequence from clone RP5-988J... 40 9.6
26emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 9.6
27gb|BC064473.1| Mus musculus Ellis van Creveld syndrome 2 homolog... 40 9.6
28gb|AF461121.1| Escherichia coli serotype O55:H7 O-antigen gene c... 40 9.6
29dbj|AK134298.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 9.6
30gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 9.6
31dbj|AK165051.1| Mus musculus 2 days pregnant adult female oviduc... 40 9.6
32dbj|AK044977.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 9.6
33dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
34gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, ... 40 9.6
35gb|AE004673.1| Pseudomonas aeruginosa PAO1, section 234 of 529 o... 40 9.6
36gb|AE004443.1| Pseudomonas aeruginosa PAO1, section 4 of 529 of ... 40 9.6
37gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 40 9.6
38gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 9.6
39emb|AL824704.27| Mouse DNA sequence from clone RP23-286H14 on ch... 40 9.6
40dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 9.6
41dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
42dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.6
43dbj|AK067200.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.6
44dbj|AK065355.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.6
45gb|AC110565.7| Mus musculus chromosome 5, clone RP23-297N19, com... 40 9.6
46dbj|AP001274.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.6
47dbj|AP002427.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.6
48dbj|AP000851.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.6
49gb|AF004210.1|AF004210 Zea mays cytochrome P-450 (CYP71C1) mRNA,... 40 9.6
50dbj|AB083066.1| Mus musculus LBN mRNA for limbin, complete cds 40 9.6
51emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on ch... 40 9.6
52gb|CP000036.1| Shigella boydii Sb227, complete genome 40 9.6
53gb|CP000038.1| Shigella sonnei Ss046, complete genome 40 9.6 
>emb|X81828.1|ZMCP71C1G Z.mays CYP71C1 gene for cytochrome P-450
          Length = 4352

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                
Query: 301  ggcggcttcaacgtgggggactacttcccggagctg 336
            ||||| |||||||||| ||||||||||||| |||||
Sbjct: 2853 ggcgggttcaacgtggaggactacttcccgaagctg 2888
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>emb|X81827.1|ZMCYP71C1 Z.mays CYP71C1 mRNA for cytochrome P-450
          Length = 1890

 Score = 48.1 bits (24), Expect = 0.039
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 301 ggcggcttcaacgtgggggactacttcccggagctg 336
           ||||| |||||||||| ||||||||||||| |||||
Sbjct: 799 ggcgggttcaacgtggaggactacttcccgaagctg 834
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>gb|AY105992.1| Zea mays PCO117584 mRNA sequence
          Length = 2038

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 307  ttcaacgtgggggactacttcccggagctg 336
            |||||||||| ||||||||||||| |||||
Sbjct: 986  ttcaacgtggaggactacttcccgaagctg 1015
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>gb|AC087416.18| Mus musculus strain C57BL/6J chromosome 2 clone rp23-224l16, complete
              sequence
          Length = 183349

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 179    gcgagctgctcagtgccttctc 200
              ||||||||||||||||||||||
Sbjct: 137687 gcgagctgctcagtgccttctc 137708
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>emb|AL805918.5| Mouse DNA sequence from clone RP23-191L7 on chromosome 2, complete
              sequence
          Length = 213625

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 179    gcgagctgctcagtgccttctc 200
              ||||||||||||||||||||||
Sbjct: 177364 gcgagctgctcagtgccttctc 177385
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>gb|AC135512.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0057M06, complete sequence
          Length = 147673

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 19    ccctacggcgaccactggaggcagg 43
             |||||||||||||||||| ||||||
Sbjct: 53721 ccctacggcgaccactggcggcagg 53697
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>gb|AC140294.3| Mus musculus BAC clone RP23-359G16 from chromosome 19, complete
             sequence
          Length = 190551

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 370   ggcagggccaggagagtgaac 390
             |||||||||||||||||||||
Sbjct: 45003 ggcagggccaggagagtgaac 44983
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>gb|AC129322.3| Mus musculus BAC clone RP23-220F4 from chromosome 19, complete
            sequence
          Length = 182093

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 370  ggcagggccaggagagtgaac 390
            |||||||||||||||||||||
Sbjct: 1721 ggcagggccaggagagtgaac 1741
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>gb|AF321858.1|AF321858 Lolium rigidum clone BXH putative cytochrome P450 mRNA, complete
           cds
          Length = 1865

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 22  tacggcgaccactggaggcaggtgaagaagatcgccatgacgcacctcctcaccgccaac 81
           ||||||||  ||||| ||||||||| |||||||  ||  || ||| ||||||||||||| 
Sbjct: 448 tacggcgagtactggcggcaggtgaggaagatcatcaccacccacgtcctcaccgccaag 507

                    
Query: 82  aaggtccgc 90
           ||| |||||
Sbjct: 508 aagatccgc 516
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 19       ccctacggcgaccactggaggcagg 43
                |||||||||||||||||| ||||||
Sbjct: 15548311 ccctacggcgaccactggcggcagg 15548287
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>gb|AC117498.6| Homo sapiens 12 BAC RP11-579D7 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 144383

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 267  cagggagctggtggagaccaa 287
            |||||||||||||||||||||
Sbjct: 2508 cagggagctggtggagaccaa 2528
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>gb|AC073610.17| Homo sapiens 12 BAC RP11-302B13 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 104593

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 267  cagggagctggtggagaccaa 287
            |||||||||||||||||||||
Sbjct: 5258 cagggagctggtggagaccaa 5238
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 19       ccctacggcgaccactggaggcagg 43
                |||||||||||||||||| ||||||
Sbjct: 15635830 ccctacggcgaccactggcggcagg 15635806
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    cccggagctgctgaagctgg 346
              ||||||||||||||||||||
Sbjct: 840878 cccggagctgctgaagctgg 840897
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>ref|XM_479693.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1395

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 5   acatcgccttctgcccctacggcgaccactgg 36
           ||||| |||||| ||||||||||||| |||||
Sbjct: 658 acatctccttctccccctacggcgactactgg 689
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>ref|XM_479695.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1587

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                
Query: 546  catgtttggagctggcacggacacatcatacatagt 581
            |||||||| ||| |||||||||||||| ||| ||||
Sbjct: 981  catgtttgaagcaggcacggacacatcgtacttagt 1016
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>ref|XM_479692.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2151

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 5   acatcgccttctgcccctacggcgaccactgg 36
           ||||| |||||| ||||||||||||| |||||
Sbjct: 658 acatctccttctccccctacggcgactactgg 689
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>ref|XM_599815.2| PREDICTED: Bos taurus similar to zinc finger protein 329 (LOC521551),
            mRNA
          Length = 3798

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 225  gtgcggcaagtccttcaggcagaa 248
            |||||||||||||||| |||||||
Sbjct: 2679 gtgcggcaagtccttccggcagaa 2702
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>gb|AY673603.1| Homo sapiens matrix metalloproteinase 20 (enamelysin) (MMP20) gene,
             complete cds
          Length = 52428

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 417   cctcatccatgaacatgaga 436
             ||||||||||||||||||||
Sbjct: 42105 cctcatccatgaacatgaga 42086
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>gb|BC037473.1| Mus musculus Ellis van Creveld syndrome 2 homolog (human), mRNA (cDNA
            clone MGC:47318 IMAGE:4237472), complete cds
          Length = 4107

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 414  aagcctcatccatgaacatgagag 437
            ||||||||||||| ||||||||||
Sbjct: 1644 aagcctcatccataaacatgagag 1667
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>ref|XM_953936.1| Neurospora crassa OR74A hypothetical protein (NCU09001.1) partial
           mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 tggcggcttcaacgtggggg 319
           ||||||||||||||||||||
Sbjct: 201 tggcggcttcaacgtggggg 220
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>ref|XM_331392.1| Neurospora crassa OR74A hypothetical protein (NCU09001.1) partial
           mRNA
          Length = 1719

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 tggcggcttcaacgtggggg 319
           ||||||||||||||||||||
Sbjct: 201 tggcggcttcaacgtggggg 220
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>ref|NM_145920.2| Mus musculus Ellis van Creveld syndrome 2 homolog (human) (Evc2),
            mRNA
          Length = 4107

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 414  aagcctcatccatgaacatgagag 437
            ||||||||||||| ||||||||||
Sbjct: 1644 aagcctcatccataaacatgagag 1667
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>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 126     ggtcgtggccaagctccgcg 145
               ||||||||||||||||||||
Sbjct: 2352949 ggtcgtggccaagctccgcg 2352930
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>emb|AL121837.33|HSJ988J12 Human DNA sequence from clone RP5-988J12 on chromosome 6q16.1-16.3
             Contains the 5' end of the MAP3K7 gene for
             mitogen-activated protein kinase kinase kinase 7 (TGF-beta
             activated kinase 1, TAK1) and two CpG islands, complete
             sequence
          Length = 86398

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 97    cgccaggcgcgcgaggaggaggcg 120
             ||||||||||||| ||||||||||
Sbjct: 25377 cgccaggcgcgcgcggaggaggcg 25400
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>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10
          Length = 313050

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 338    tgaagctggacatcatcagg 357
              ||||||||||||||||||||
Sbjct: 201451 tgaagctggacatcatcagg 201470
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>gb|BC064473.1| Mus musculus Ellis van Creveld syndrome 2 homolog (human), mRNA (cDNA
            clone MGC:70212 IMAGE:3156380), complete cds
          Length = 4117

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 414  aagcctcatccatgaacatgagag 437
            ||||||||||||| ||||||||||
Sbjct: 1654 aagcctcatccataaacatgagag 1677
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>gb|AF461121.1| Escherichia coli serotype O55:H7 O-antigen gene cluster, complete
             sequence
          Length = 27730

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 326   tcccggagctgctgaagctg 345
             ||||||||||||||||||||
Sbjct: 24768 tcccggagctgctgaagctg 24749
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>dbj|AK134298.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030401H11 product:Ellis van
            Creveld syndrome 2 homolog (human), full insert sequence
          Length = 1767

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 414  aagcctcatccatgaacatgagag 437
            ||||||||||||| ||||||||||
Sbjct: 1646 aagcctcatccataaacatgagag 1669
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 148     gcgatggccgcaggggccgc 167
               ||||||||||||||||||||
Sbjct: 1869706 gcgatggccgcaggggccgc 1869687
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>dbj|AK165051.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN
            full-length enriched library, clone:E230015K17
            product:Ellis van Creveld syndrome 2 homolog (human),
            full insert sequence
          Length = 1672

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 414  aagcctcatccatgaacatgagag 437
            ||||||||||||| ||||||||||
Sbjct: 1548 aagcctcatccataaacatgagag 1571
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>dbj|AK044977.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
            enriched library, clone:B130017E20 product:hypothetical
            protein, full insert sequence
          Length = 2797

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 414  aagcctcatccatgaacatgagag 437
            ||||||||||||| ||||||||||
Sbjct: 1534 aagcctcatccataaacatgagag 1557
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 546    catgtttggagctggcacggacacatcatacatagt 581
              |||||||| ||| |||||||||||||| ||| ||||
Sbjct: 302974 catgtttgaagcaggcacggacacatcgtacttagt 303009



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 5      acatcgccttctgcccctacggcgaccactgg 36
              ||||| |||||| ||||||||||||| |||||
Sbjct: 297037 acatctccttctccccctacggcgactactgg 297006
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>gb|AC084472.1|AC084472 Caenorhabditis briggsae cosmid CB048M21, complete sequence
          Length = 62355

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 545   tcatgtttggagctggcacg 564
             ||||||||||||||||||||
Sbjct: 45921 tcatgtttggagctggcacg 45940
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>gb|AE004673.1| Pseudomonas aeruginosa PAO1, section 234 of 529 of the complete genome
          Length = 24397

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 433   gagagcaagccggcgccggcgttg 456
             ||||||| ||||||||||||||||
Sbjct: 14782 gagagcaggccggcgccggcgttg 14805
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>gb|AE004443.1| Pseudomonas aeruginosa PAO1, section 4 of 529 of the complete genome
          Length = 19372

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 433   gagagcaagccggcgccggcgttg 456
             ||||||| ||||||||||||||||
Sbjct: 11118 gagagcaggccggcgccggcgttg 11095
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    cccggagctgctgaagctgg 346
              ||||||||||||||||||||
Sbjct: 835696 cccggagctgctgaagctgg 835715
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 133     gccaagctccgcgatgcgatggcc 156
               |||||||||||||| |||||||||
Sbjct: 2683734 gccaagctccgcgaggcgatggcc 2683757
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>emb|AL824704.27| Mouse DNA sequence from clone RP23-286H14 on chromosome 4, complete
             sequence
          Length = 205555

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   agggccaggagagtgaacaa 392
             ||||||||||||||||||||
Sbjct: 91400 agggccaggagagtgaacaa 91419
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 39     gcaggtgaagaagatcgcca 58
              ||||||||||||||||||||
Sbjct: 324245 gcaggtgaagaagatcgcca 324226
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>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0450B04
          Length = 153268

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 546   catgtttggagctggcacggacacatcatacatagt 581
             |||||||| ||| |||||||||||||| ||| ||||
Sbjct: 12488 catgtttgaagcaggcacggacacatcgtacttagt 12523



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 5    acatcgccttctgcccctacggcgaccactgg 36
            ||||| |||||| ||||||||||||| |||||
Sbjct: 6551 acatctccttctccccctacggcgactactgg 6520
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>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1300_E01
          Length = 103022

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 546   catgtttggagctggcacggacacatcatacatagt 581
             |||||||| ||| |||||||||||||| ||| ||||
Sbjct: 69400 catgtttgaagcaggcacggacacatcgtacttagt 69435



 Score = 40.1 bits (20), Expect = 9.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 5     acatcgccttctgcccctacggcgaccactgg 36
             ||||| |||||| ||||||||||||| |||||
Sbjct: 63463 acatctccttctccccctacggcgactactgg 63432
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>dbj|AK067200.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013097P19, full
           insert sequence
          Length = 2151

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 5   acatcgccttctgcccctacggcgaccactgg 36
           ||||| |||||| ||||||||||||| |||||
Sbjct: 658 acatctccttctccccctacggcgactactgg 689
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>dbj|AK065355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013014E16, full
           insert sequence
          Length = 1395

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 5   acatcgccttctgcccctacggcgaccactgg 36
           ||||| |||||| ||||||||||||| |||||
Sbjct: 658 acatctccttctccccctacggcgactactgg 689
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>gb|AC110565.7| Mus musculus chromosome 5, clone RP23-297N19, complete sequence
          Length = 194214

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 414   aagcctcatccatgaacatgagag 437
             ||||||||||||| ||||||||||
Sbjct: 90966 aagcctcatccataaacatgagag 90989
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>dbj|AP001274.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-840J5, complete
             sequence
          Length = 210282

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   tgctcagtgccttctccacc 204
             ||||||||||||||||||||
Sbjct: 23215 tgctcagtgccttctccacc 23234
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>dbj|AP002427.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-90I16, complete
             sequence
          Length = 154159

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   tgctcagtgccttctccacc 204
             ||||||||||||||||||||
Sbjct: 86930 tgctcagtgccttctccacc 86949
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>dbj|AP000851.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-817J15, complete
             sequences
          Length = 172981

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   cctcatccatgaacatgaga 436
             ||||||||||||||||||||
Sbjct: 38322 cctcatccatgaacatgaga 38341
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>gb|AF004210.1|AF004210 Zea mays cytochrome P-450 (CYP71C1) mRNA, partial cds
          Length = 1185

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 301 ggcggcttcaacgtgggggactacttcccggagctg 336
           ||||| ||||||||||  |||||||||||| |||||
Sbjct: 162 ggcgggttcaacgtggaagactacttcccgaagctg 197
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>dbj|AB083066.1| Mus musculus LBN mRNA for limbin, complete cds
          Length = 3663

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 414  aagcctcatccatgaacatgagag 437
            ||||||||||||| ||||||||||
Sbjct: 1593 aagcctcatccataaacatgagag 1616
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>emb|AL513352.12| Mouse DNA sequence from clone RP23-180L12 on chromosome 15, complete
            sequence
          Length = 240977

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 512  tcacaagggagcaggtcaaa 531
            ||||||||||||||||||||
Sbjct: 9949 tcacaagggagcaggtcaaa 9930
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    cccggagctgctgaagctgg 346
              ||||||||||||||||||||
Sbjct: 796951 cccggagctgctgaagctgg 796970
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    cccggagctgctgaagctgg 346
              ||||||||||||||||||||
Sbjct: 890922 cccggagctgctgaagctgg 890941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,016,018
Number of Sequences: 3902068
Number of extensions: 5016018
Number of successful extensions: 98443
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97723
Number of HSP's gapped (non-prelim): 717
length of query: 698
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 675
effective length of database: 17,143,297,704
effective search space: 11571725950200
effective search space used: 11571725950200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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