>ENV_FSVGA (P03391) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E; R protein]
          Length = 662

 Score = 36.6 bits (83), Expect = 0.075
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRVPPDVEAGESIC 505
           +R+K+CW    SRPP         +Y ++  P  SC S P H++     +G+ +C
Sbjct: 327 NRTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSIPQHKLTISEVSGQGLC 381

>ENV_FLVSA (P06752) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 639

 Score = 36.2 bits (82), Expect = 0.098
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRVPPDVEAGESIC 505
           +++K+CW    SRPP         +Y ++  P  SC S P H++     +G+ +C
Sbjct: 304 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSTPQHKLTISEVSGQGLC 358

>ENV_FSVSM (P21445) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 645

 Score = 36.2 bits (82), Expect = 0.098
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRVPPDVEAGESIC 505
           +++K+CW    SRPP         +Y ++  P  SC S P H++     +G+ +C
Sbjct: 310 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKLTISEVSGQGLC 364

>ENV_FLVCS (Q02077) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E] (Fragment)
          Length = 436

 Score = 36.2 bits (82), Expect = 0.098
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRVPPDVEAGESIC 505
           +++K+CW    SRPP         +Y ++  P  SC S P H++     +G+ +C
Sbjct: 277 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKLTISEVSGQGLC 331

>ENV_FLVGL (P08359) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 642

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRVPPDVEAGESIC 505
           +++K+CW    SRPP         +Y ++  P  SC S P H++     +G+ +C
Sbjct: 307 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKLTISEVSGQGMC 361

>ENV_FSVST (P03392) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E] (Fragment)
          Length = 534

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRVPPDVEAGESIC 505
           +++K+CW    SRPP         +Y ++  P  SC S P H++     +G+ +C
Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSDPQHKLTISEVSGQGLC 381

>ENV_FLVC6 (P21443) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 668

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRVPPDVEAGESIC 505
           +++K+CW    SRPP         +Y ++  P  SC S P H++     +G+ +C
Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSVPQHKLTISEVSGQGLC 381

>ENV_FLVCA (Q02076) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E] (Fragment)
          Length = 410

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRVPPDVEAGESIC 505
           +++K+CW    SRPP         +Y ++  P  SC S P H++     +G+ +C
Sbjct: 267 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSIPQHKLTISEVSGQGLC 321

>ENV_FLVLB (P11261) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E] (Fragment)
          Length = 662

 Score = 34.3 bits (77), Expect = 0.37
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRVPPDVEAGESIC 505
           +++K+CW    SRPP         +Y ++  P  SC S P H++     +G+  C
Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSDPQHKLTISEVSGQGSC 381

>HIRA_HUMAN (P54198) HIRA protein (TUP1-like enhancer of split protein 1)|
          Length = 1017

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 284 RNGAAAGPVTPARCCCRLGTLLHRSKNCWASCSSRP 391
           +NG++A P  P  CCC +G+   RS + W +C  RP
Sbjct: 286 KNGSSAKPSCP-YCCCAVGS-KDRSLSVWLTCLKRP 319

>COQ3_SCHPO (O74421) Hexaprenyldihydroxybenzoate methyltransferase,|
           mitochondrial precursor (EC 2.1.1.114)
           (Dihydroxyhexaprenylbenzoate methyltransferase)
           (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase)
           (DHHB methyltransferase) (DHHB-MT) (DHHB-MTas
          Length = 271

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
 Frame = -3

Query: 235 YSISLNYIRPSGDLKNNYWG------LLHKIGPN*TNYWSKIYRERDCTSG 101
           +S+S+N +    +L   +W       LLH +     ++ ++++RER+C SG
Sbjct: 28  HSVSVNEVDHFNELAKTWWDWDGGSRLLHLMNSTRLDFMTEVFRERNCFSG 78

>HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split protein 1)|
          Length = 1015

 Score = 30.4 bits (67), Expect = 5.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 284 RNGAAAGPVTPARCCCRLGTLLHRSKNCWASCSSRP 391
           +NG++  P  P  CCC +G+   RS + W +C  RP
Sbjct: 286 KNGSSTKPSCPY-CCCAVGSK-DRSLSVWLTCLKRP 319

>TRI47_HUMAN (Q96LD4) Tripartite motif protein 47 (Gene overexpressed in|
           astrocytoma protein) (RING finger protein 100)
          Length = 638

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = +2

Query: 314 PARC-CCRLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASCASRPHHRVPPDVEA 490
           P RC  C  G  L  + +C +  +S  P         H  P   S A R H  VPP    
Sbjct: 126 PVRCDACPEGAALPAALSCLSCLASFCP--------AHLGPHERSPALRGHRLVPPLRRL 177

Query: 491 GESICP 508
            ES+CP
Sbjct: 178 EESLCP 183

>HTPX_METJA (Q59076) Probable protease htpX homolog (EC 3.4.24.-)|
          Length = 284

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
 Frame = -2

Query: 500 WIHQPQRRVARDGAAGKRKRLSEEDGEHNGSTSQPAAAVTNKKPNSSCFGAT---TFQVG 330
           W+HQ   RVAR     K K            T  P A  T + P ++    T      + 
Sbjct: 67  WLHQMVERVARKAGLPKPKVAIV-------PTETPNAFATGRNPENAVVAVTEGILKLLS 119

Query: 329 NNTLQGSLGQPLLHF*HGDRMN*RWIHTILLLLHQSELYTAKW 201
              L+G +G  + H  H D +    I TI+  L  + +  A+W
Sbjct: 120 PEELEGVIGHEISHIKHRDIL----ISTIVATLAGAIVMIAEW 158

>YFYA_SCHPO (Q9UT18) Putative amino-acid permease C9.10|
          Length = 591

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +1

Query: 160 LSCAIGPNNCFSSHHLAVYNSD*WSRSSIVCIHRQFI---RSPC*KWSSGWPSDPCKVLL 330
           L C I P+    +  ++   +  ++  +++   R FI   + P  +WS GW S PC V+ 
Sbjct: 460 LLCTILPSAVAFTSLVSAAGAPSFAAYAVLAFCRLFITRDKFPKGRWSLGWLSKPCLVIT 519

Query: 331 PTWNVVA 351
             +N+ A
Sbjct: 520 LVYNLFA 526

>K0143_HUMAN (Q14156) Protein KIAA0143 (Fragment)|
          Length = 885

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 654 LLNDYSLAQLFDDSGHALMARHDQHAALFG 565
           L+ DY L QL  +  H LM RHD  A L G
Sbjct: 533 LMEDYELRQLVLEVMHNLMDRHDNRAKLRG 562

>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +2

Query: 272  DPHVRNGAAAGPVTPARCCC-RLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASC 448
            +P     +   P  P+ C   R G    R+   WA     PPL  S     ++PP  A C
Sbjct: 2256 EPMAEEESDLEPSIPSECMLPRSG--FPRALPAWARPDYNPPLVESWRRPDYQPPTVAGC 2313

Query: 449  ASRPHHRVP 475
            A  P  + P
Sbjct: 2314 ALPPPKKAP 2322

>ENS2_YEAST (P12294) Endonuclease SceI small subunit (Maturase-like RF3|
           protein)
          Length = 559

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 250 TRYYFYSISLNYIRPSGDLKNNYW 179
           TR YF   +     P GD+KNNYW
Sbjct: 380 TRRYFRGPATGAGTPQGDIKNNYW 403

>MASP2_RAT (Q9JJS8) Mannan-binding lectin serine protease 2 precursor (EC|
           3.4.21.104) (Mannose-binding protein-associated serine
           protease 2) (MASP-2) (MBL-associated serine protease 2)
           [Contains: Mannan-binding lectin serine protease 2 A
           chain; Mannan-bin
          Length = 685

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +2

Query: 323 CCCRLGTLLHRSKNCWASCSSRPPLAG-----SSTHYVHRPPPTASCA 451
           C CR+G +LH++K+  ++  S     G     SS  Y    P  +SCA
Sbjct: 165 CSCRVGYILHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCA 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,356,499
Number of Sequences: 219361
Number of extensions: 2097218
Number of successful extensions: 7053
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7024
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6912958834
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)