ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9o21 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187534.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1179 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 611 ccgctgtcgtcgaagagctgcgctagcgagtagtcgttgagcaactctgaaatggacggg 670 |||| ||||||||||||||||| |||||||| |||||||||| || |||||||| ||| Sbjct: 782 ccgccgtcgtcgaagagctgcgacagcgagtactcgttgagcaggtcggaaatggaaggg 723 Query: 671 atcttcggcat 681 |||||| |||| Sbjct: 722 atcttctgcat 712
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 611 ccgctgtcgtcgaagagctgcgctagcgagtagtcgttgagcaactctgaaatggacggg 670 |||| ||||||||||||||||| |||||||| |||||||||| || |||||||| ||| Sbjct: 11947943 ccgccgtcgtcgaagagctgcgacagcgagtactcgttgagcaggtcggaaatggaaggg 11948002 Query: 671 atcttcggcat 681 |||||| |||| Sbjct: 11948003 atcttctgcat 11948013
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 611 ccgctgtcgtcgaagagctgcgctagcgagtagtcgttgagcaactctgaaatggacggg 670 |||| ||||||||||||||||| |||||||| |||||||||| || |||||||| ||| Sbjct: 11944706 ccgccgtcgtcgaagagctgcgacagcgagtactcgttgagcaggtcggaaatggaaggg 11944765 Query: 671 atcttcggcat 681 |||||| |||| Sbjct: 11944766 atcttctgcat 11944776
>gb|AC126222.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0014I10, complete sequence Length = 113946 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Plus Query: 611 ccgctgtcgtcgaagagctgcgctagcgagtagtcgttgagcaactctgaaatggacggg 670 |||| ||||||||||||||||| |||||||| |||||||||| || |||||||| ||| Sbjct: 49205 ccgccgtcgtcgaagagctgcgacagcgagtactcgttgagcaggtcggaaatggaaggg 49264 Query: 671 atcttcggcat 681 |||||| |||| Sbjct: 49265 atcttctgcat 49275
>gb|AF537267.1| Synthetic construct insect toxin CryIA(c) gene, complete cds Length = 1848 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 518 atgttgttgccgctgctgttca 539 |||||||||||||||||||||| Sbjct: 1523 atgttgttgccgctgctgttca 1502
>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and 01G10 from library NotreDame1 of Anopheles gambiae (African malaria mosquito) strain PEST Length = 447895 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 138 caataatttgtctaatttggac 159 |||||||||||||||||||||| Sbjct: 444752 caataatttgtctaatttggac 444731
>gb|AY667343.1| Ciona intestinalis isolate east coast 5 forkhead gene, partial cds Length = 4478 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 tatatttttgaccaataattt 146 ||||||||||||||||||||| Sbjct: 1252 tatatttttgaccaataattt 1232
>gb|AC107677.7| Mus musculus chromosome 3, clone RP23-235F22, complete sequence Length = 157746 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 182 ataattgtttttcaagtcaccactt 206 |||||||||||||||| |||||||| Sbjct: 7347 ataattgtttttcaagccaccactt 7371
>gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic sequence, complete sequence Length = 124895 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 118 tttccctatatatttttgaccaataattt 146 |||||||||||||||| |||| ||||||| Sbjct: 66920 tttccctatatattttggacctataattt 66948
>gb|AC148157.1| Homo sapiens chromosome 21 clone XX-181G02-M map q21.3-22.11, complete sequence Length = 210352 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 486 aggctggtgaatccatctgcccaag 510 |||||||||||||||||| |||||| Sbjct: 93546 aggctggtgaatccatcttcccaag 93522
>emb|AL591004.3| Human DNA sequence from clone RP11-497F24 on chromosome 6, complete sequence Length = 159845 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 tatataattcagactgatggagtag 236 ||||||||||| ||||||||||||| Sbjct: 23825 tatataattcatactgatggagtag 23849
>gb|AC157777.2| Medicago truncatula chromosome 7 BAC clone mth2-25c14, complete sequence Length = 106857 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 28 aaaatattgtgtacacactacaaaccaaa 56 |||||||||| |||| ||||||||||||| Sbjct: 86993 aaaatattgtatacaaactacaaaccaaa 86965
>gb|AY271661.1| Homo sapiens v-raf-1 murine leukemia viral oncogene homolog 1 (RAF1) gene, complete cds Length = 82374 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 519 tgttgttgccgctgctgttca 539 ||||||||||||||||||||| Sbjct: 27367 tgttgttgccgctgctgttca 27387
>dbj|AP001705.1| Homo sapiens genomic DNA, chromosome 21q, section 49/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 486 aggctggtgaatccatctgcccaag 510 |||||||||||||||||| |||||| Sbjct: 100537 aggctggtgaatccatcttcccaag 100513
>gb|AC101992.11| Mus musculus chromosome 3, clone RP24-377J3, complete sequence Length = 191967 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 ataattgtttttcaagtcaccactt 206 |||||||||||||||| |||||||| Sbjct: 20586 ataattgtttttcaagccaccactt 20562
>gb|AC026170.5| Homo sapiens chromosome 3 clone RP11-163D23 map 3p, complete sequence Length = 145212 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 519 tgttgttgccgctgctgttca 539 ||||||||||||||||||||| Sbjct: 62588 tgttgttgccgctgctgttca 62568
>dbj|AP000240.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:B175P11, complete sequence Length = 176099 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 486 aggctggtgaatccatctgcccaag 510 |||||||||||||||||| |||||| Sbjct: 90894 aggctggtgaatccatcttcccaag 90870
>dbj|AP000200.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone B355D16-T1073, segment 6/8, complete sequence Length = 100000 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 486 aggctggtgaatccatctgcccaag 510 |||||||||||||||||| |||||| Sbjct: 77454 aggctggtgaatccatcttcccaag 77478
>dbj|AP000096.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, B335D16-P10G11 region, segment 6/7 Length = 100000 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 486 aggctggtgaatccatctgcccaag 510 |||||||||||||||||| |||||| Sbjct: 77454 aggctggtgaatccatcttcccaag 77478
>gb|AC110909.10| Mus musculus chromosome 7, clone RP24-186G5, complete sequence Length = 161738 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 gacagcctcttgcgcttccc 455 |||||||||||||||||||| Sbjct: 89974 gacagcctcttgcgcttccc 89993
>gb|AC005592.1| Homo sapiens chromosome 5, BAC clone 79a6 (LBNL H172), complete sequence Length = 90693 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 ggaattggctcatgatgggg 562 |||||||||||||||||||| Sbjct: 8135 ggaattggctcatgatgggg 8154
>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0086N07 map S790A, complete sequence Length = 178523 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tgatcgatggacctagctag 89 |||||||||||||||||||| Sbjct: 93740 tgatcgatggacctagctag 93759
>ref|XM_367648.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07559.4) partial mRNA Length = 1728 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tcacggccgccgctggctgg 402 |||||||||||||||||||| Sbjct: 1649 tcacggccgccgctggctgg 1668
>ref|XM_322354.1| Neurospora crassa OR74A hypothetical protein (NCU00269.1) partial mRNA Length = 2865 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 caagtcaccacttggccgta 213 |||||||||||||||||||| Sbjct: 2307 caagtcaccacttggccgta 2326
>ref|XM_952647.1| Neurospora crassa OR74A hypothetical protein (NCU00269.1) partial mRNA Length = 2865 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 caagtcaccacttggccgta 213 |||||||||||||||||||| Sbjct: 2307 caagtcaccacttggccgta 2326
>gb|AE009144.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 170 of 256 of the complete sequence Length = 10570 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 tggccgaagagggcggcgtg 582 |||||||||||||||||||| Sbjct: 5189 tggccgaagagggcggcgtg 5170
>emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, complete sequence Length = 195301 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 caatccctttccctatatattttt 134 |||| ||||||||||||||||||| Sbjct: 149708 caattcctttccctatatattttt 149685
>gb|AC127337.4| Mus musculus BAC clone RP23-168F21 from 12, complete sequence Length = 209066 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 atatttttgaccaataattt 146 |||||||||||||||||||| Sbjct: 112779 atatttttgaccaataattt 112760
>emb|AL357514.19| Human DNA sequence from clone RP1-105O18 on chromosome 6 Contains a novel gene and a CpG island, complete sequence Length = 140630 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ttgaccaataatttgtctaa 152 |||||||||||||||||||| Sbjct: 18133 ttgaccaataatttgtctaa 18114
>emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segment 1/7 Length = 349544 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 ataggagacaaaaatattgt 37 |||||||||||||||||||| Sbjct: 231941 ataggagacaaaaatattgt 231922
>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24 Length = 299050 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 561 ggtggccgaagagggcggcgtgttgatc 588 |||| ||||||||||||| ||||||||| Sbjct: 5098 ggtgcccgaagagggcggtgtgttgatc 5125
>gb|AC160021.3| Pan troglodytes BAC clone CH251-564M21 from chromosome unknown, complete sequence Length = 201789 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 ggaattggctcatgatgggg 562 |||||||||||||||||||| Sbjct: 5464 ggaattggctcatgatgggg 5483
>emb|AL766856.1|SAG766856 Streptococcus agalactiae NEM316 complete genome, segment 14 Length = 103485 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 aaaatattgtgtacacactacaaa 51 ||||||||||||||||||| |||| Sbjct: 41500 aaaatattgtgtacacacttcaaa 41523
>emb|AL604062.15| Mouse DNA sequence from clone RP23-104B6 on chromosome 11 Contains a novel gene, a ferritin light chain (Ftl) pseudogene and a CpG island, complete sequence Length = 216510 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 cataggagacaaaaatattg 36 |||||||||||||||||||| Sbjct: 4398 cataggagacaaaaatattg 4417
>gb|AC023711.5| Drosophila melanogaster X BAC RP98-6C4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174157 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 atgttgttgccgctgctgtt 537 |||||||||||||||||||| Sbjct: 101777 atgttgttgccgctgctgtt 101758
>gb|AC011463.7| Homo sapiens chromosome 19 clone CTC-442E9, complete sequence Length = 101944 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 aatcaactagaagtatgatc 74 |||||||||||||||||||| Sbjct: 35760 aatcaactagaagtatgatc 35779
>gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167926 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 atgttgttgccgctgctgtt 537 |||||||||||||||||||| Sbjct: 131191 atgttgttgccgctgctgtt 131172
>gb|AF511750.1| Hepatitis C virus isolate XF24 partial sequence Length = 1020 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 tgcaaggtgttgttgccgac 335 |||||||||||||||||||| Sbjct: 914 tgcaaggtgttgttgccgac 895
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 632 gctagcgagtagtcgttgag 651 |||||||||||||||||||| Sbjct: 426782 gctagcgagtagtcgttgag 426801
>ref|NM_144220.1| Drosophila melanogaster CG12714-RB (CG12714), mRNA Length = 963 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 atgttgttgccgctgctgtt 537 |||||||||||||||||||| Sbjct: 1 atgttgttgccgctgctgtt 20
>gb|AC008533.9| Homo sapiens chromosome 5 clone CTC-483L24, complete sequence Length = 254730 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 ggaattggctcatgatgggg 562 |||||||||||||||||||| Sbjct: 242710 ggaattggctcatgatgggg 242729
>gb|AC078957.16| Homo sapiens Xp BAC RP11-339E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198088 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 111 caatccctttccctatatattttt 134 |||| ||||||||||||||||||| Sbjct: 34597 caattcctttccctatatattttt 34574
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 tggccgaagagggcggcgtg 582 |||||||||||||||||||| Sbjct: 1880719 tggccgaagagggcggcgtg 1880700
>ref|XM_394771.2| PREDICTED: Apis mellifera insulin-like receptor precursor (InR), mRNA Length = 6126 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 518 atgttgttgccgctgctgtt 537 |||||||||||||||||||| Sbjct: 1 atgttgttgccgctgctgtt 20
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tgatcgatggacctagctag 89 |||||||||||||||||||| Sbjct: 13090340 tgatcgatggacctagctag 13090321
>gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, complete sequence Length = 112289 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 cataggagacaaaaatattg 36 |||||||||||||||||||| Sbjct: 61424 cataggagacaaaaatattg 61405
>gb|AC171180.2| Pan troglodytes BAC clone CH251-283C10 from chromosome unknown, complete sequence Length = 166310 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 ggaattggctcatgatgggg 562 |||||||||||||||||||| Sbjct: 61690 ggaattggctcatgatgggg 61709
>emb|AL954695.14| Zebrafish DNA sequence from clone CH211-202N12 in linkage group 1, complete sequence Length = 207004 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 tccctttccctatatatttttgac 137 ||||||||||||| |||||||||| Sbjct: 136192 tccctttccctatttatttttgac 136215
>dbj|AK071260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086A05, full insert sequence Length = 843 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tgatcgatggacctagctag 89 |||||||||||||||||||| Sbjct: 624 tgatcgatggacctagctag 605
>dbj|AK061288.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H12, full insert sequence Length = 846 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tgatcgatggacctagctag 89 |||||||||||||||||||| Sbjct: 623 tgatcgatggacctagctag 604
>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete sequence Length = 332030 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 518 atgttgttgccgctgctgtt 537 |||||||||||||||||||| Sbjct: 187876 atgttgttgccgctgctgtt 187857
>emb|BX005199.10| Zebrafish DNA sequence from clone DKEY-12I13 in linkage group 20, complete sequence Length = 119113 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 atatttttgaccaataattt 146 |||||||||||||||||||| Sbjct: 39435 atatttttgaccaataattt 39454
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 611 ccgctgtcgtcgaagagctg 630 |||||||||||||||||||| Sbjct: 4540984 ccgctgtcgtcgaagagctg 4540965
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tgatcgatggacctagctag 89 |||||||||||||||||||| Sbjct: 13170519 tgatcgatggacctagctag 13170500
>gb|AF067496.1|AF067496 Leishmania donovani aminophospholipid translocase (APLT1) gene, complete cds Length = 6640 Score = 40.1 bits (20), Expect = 9.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 291 gagcagcggctggcccagtgacccctgc 318 |||||||||||||| ||||| ||||||| Sbjct: 6560 gagcagcggctggcgcagtggcccctgc 6587
>emb|CT010408.3| Pan troglodytes chromosome X BAC RP43-014H14, complete sequence Length = 172332 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 caatccctttccctatatattttt 134 |||| ||||||||||||||||||| Sbjct: 139154 caattcctttccctatatattttt 139177
>gb|DQ084248.1| Uncultured bacterium BAC-L1N9, complete sequence of BAC Length = 25361 Score = 40.1 bits (20), Expect = 9.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 511 ctgcgacatgttgttgccgc 530 |||||||||||||||||||| Sbjct: 22363 ctgcgacatgttgttgccgc 22344
>emb|AL611936.11| Mouse DNA sequence from clone RP23-40G2 on chromosome 4, complete sequence Length = 166167 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 529 gctgctgttcacatggaattggct 552 |||| ||||||||||||||||||| Sbjct: 64811 gctgatgttcacatggaattggct 64834
>emb|AL607109.21| Mouse DNA sequence from clone RP23-352D7 on chromosome 4, complete sequence Length = 187252 Score = 40.1 bits (20), Expect = 9.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 515 gacatgttgttgccgctgctgttc 538 ||||||||||||| |||||||||| Sbjct: 59263 gacatgttgttgctgctgctgttc 59286 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,301,881 Number of Sequences: 3902068 Number of extensions: 5301881 Number of successful extensions: 98327 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 97958 Number of HSP's gapped (non-prelim): 369 length of query: 696 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 673 effective length of database: 17,143,297,704 effective search space: 11537439354792 effective search space used: 11537439354792 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
