>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 63.2 bits (152), Expect = 7e-10
 Identities = 40/99 (40%), Positives = 58/99 (58%), Gaps = 1/99 (1%)
 Frame = +3

Query: 60  ARPPVLKKPKARDPNKREMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSL-NQHDDE 236
           ++PP   + +  D  K  M++ EK++LS D+  LP EKL  VV II+ R  SL N + DE
Sbjct: 593 SKPPPTYESEEEDKCK-PMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDE 651

Query: 237 IEVDIDSFDVETLWELDRFVTNYKKSITKNKRKAELSVV 353
           IE+D ++    TL EL+R+VT    S  + KRK +   V
Sbjct: 652 IEIDFETLKPSTLRELERYVT----SCLRKKRKPQAEKV 686

>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 62.8 bits (151), Expect = 9e-10
 Identities = 40/98 (40%), Positives = 57/98 (58%), Gaps = 1/98 (1%)
 Frame = +3

Query: 63  RPPVLKKPKARDPNKREMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSL-NQHDDEI 239
           +PP   + +  D  K  M++ EK++LS D+  LP EKL  VV II+ R  SL N + DEI
Sbjct: 595 KPPPTYESEEEDKCK-PMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEI 653

Query: 240 EVDIDSFDVETLWELDRFVTNYKKSITKNKRKAELSVV 353
           E+D ++    TL EL+R+VT    S  + KRK +   V
Sbjct: 654 EIDFETLKPSTLRELERYVT----SCLRKKRKPQAEKV 687

>BRD2_HUMAN (P25440) Bromodomain-containing protein 2 (RING3 protein) (O27.1.1)|
          Length = 801

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
 Frame = +3

Query: 48  QAGTARPPVLKK--PKARDPNKREMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSL- 218
           +A    PP L        +   R M++ EK++LS D+  LP EKL  VV II+ R  SL 
Sbjct: 618 KATKTAPPALPTGYDSEEEEESRPMSYDEKRQLSLDINKLPGEKLGRVVHIIQAREPSLR 677

Query: 219 NQHDDEIEVDIDSFDVETLWELDRFVTN-----------YKKSITKNKRKAELSVVRQDE 365
           + + +EIE+D ++    TL EL+R+V +            KK + K K +  L   R+ E
Sbjct: 678 DSNPEEIEIDFETLKPSTLRELERYVLSCLRKKPRKPYTIKKPVGKTKEELALEKKRELE 737

>BRD2_CANFA (Q5TJG6) Bromodomain-containing protein 2|
          Length = 803

 Score = 56.6 bits (135), Expect = 6e-08
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 14/120 (11%)
 Frame = +3

Query: 48  QAGTARPPVLKK--PKARDPNKREMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSL- 218
           +A    PP L        +   R M++ EK++LS D+  LP EKL  VV II+ R  SL 
Sbjct: 620 KATKTAPPALPTGYDSEEEEESRPMSYDEKRQLSLDINKLPGEKLGRVVHIIQAREPSLR 679

Query: 219 NQHDDEIEVDIDSFDVETLWELDRFVTN-----------YKKSITKNKRKAELSVVRQDE 365
           + + +EIE+D ++    TL EL+R+V +            KK + K K +  L   R+ E
Sbjct: 680 DSNPEEIEIDFETLKPSTLRELERYVLSCLRKKPRKPYTIKKPVGKTKEELALEKKRELE 739

>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane|
            protein)
          Length = 2038

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 25/193 (12%)
 Frame = +3

Query: 72   VLKKPKARDPNKREMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSL-NQHDDEIEVD 248
            V+      +   + M++ EK++LS D+  LP +KL  VV II+ R  SL + + DEIE+D
Sbjct: 938  VMNFDSEEEDTAKPMSYDEKRQLSLDINKLPGDKLGRVVHIIQNREPSLRDSNPDEIEID 997

Query: 249  IDSFDVETLWELDRFVTN--YKKSITKNKRKAELSVVRQDESDHEPDLEKI--------E 398
             ++    TL EL+ +V +   KK+  K   K++   + + + + E  L+ +        +
Sbjct: 998  FETLKPSTLRELESYVASCLRKKTHKKPSGKSKDEQMAEKKQELEKRLQDVTGQLGASKK 1057

Query: 399  HARHDEGEQNQMRTVHNTIPEPEAXXXXXXXXXEPLIV--------------EAEPHKET 536
             A+ DE   +++  V    P   +                            E  P K+ 
Sbjct: 1058 TAKKDESASSKVEAVQPANPVSSSSSSSDSSSSSSSDSSSSDSSDSEAGDGDERPPRKKK 1117

Query: 537  AADDNGRYVGSSS 575
            + D NG  V + S
Sbjct: 1118 SRDSNGSNVNNPS 1130

>BRD3_MOUSE (Q8K2F0) Bromodomain-containing protein 3 (Bromodomain-containing|
           FSH-like protein FSRG2)
          Length = 726

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = +3

Query: 114 MTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSL-NQHDDEIEVDIDSFDVETLWELDR 290
           M++ EK++LS D+  LP EKL  VV II+ R  SL + + DEIE+D ++    TL EL+R
Sbjct: 573 MSYDEKRQLSLDINRLPGEKLGRVVHIIQSREPSLRDSNPDEIEIDFETLKPTTLRELER 632

Query: 291 FVTNYKKSITKNKRK 335
           +V   K  + K +RK
Sbjct: 633 YV---KSCLQKKQRK 644

>BRD3_HUMAN (Q15059) Bromodomain-containing protein 3 (RING3-like protein)|
          Length = 726

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = +3

Query: 114 MTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSL-NQHDDEIEVDIDSFDVETLWELDR 290
           M++ EK++LS D+  LP EKL  VV II+ R  SL + + DEIE+D ++    TL EL+R
Sbjct: 572 MSYDEKRQLSLDINRLPGEKLGRVVHIIQSREPSLRDSNPDEIEIDFETLKPTTLRELER 631

Query: 291 FVTNYKKSITKNKRK 335
           +V   K  + K +RK
Sbjct: 632 YV---KSCLQKKQRK 643

>BDF1_YEAST (P35817) Protein BDF1|
          Length = 686

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 41/170 (24%), Positives = 72/170 (42%), Gaps = 5/170 (2%)
 Frame = +3

Query: 105  KREMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSLNQHDDEIEVDIDSFDVETLWEL 284
            K  +T+  K+ ++  + DLP  KL+  + IIKK   ++++ DDE+E+D+D+ D  T+  L
Sbjct: 525  KTVVTYDMKRIITERINDLPTSKLERAIDIIKKSMPNISE-DDEVELDLDTLDNHTILTL 583

Query: 285  -DRFVTNYKKSITKNKRKAELSVVRQDESDHEP----DLEKIEHARHDEGEQNQMRTVHN 449
             + F   Y+ S   +      S V +D S   P      ++   A   E +  Q+  + N
Sbjct: 584  YNTFFRQYESSSGASNGLDGTSGVTRDASSLSPTSAGSRKRRSKALSQEEQSRQIEKIKN 643

Query: 450  TIPEPEAXXXXXXXXXEPLIVEAEPHKETAADDNGRYVGSSSPAHLEDQK 599
             +               PL     P +  +A  NG    S      E ++
Sbjct: 644  KL--------AILDSASPLSQNGSPGQIQSAAHNGFSSSSDDDVSSESEE 685

>YCK2_SCHPO (Q9Y7N0) Hypothetical bromodomain protein C1450.02|
          Length = 578

 Score = 37.7 bits (86), Expect = 0.030
 Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
 Frame = +3

Query: 75  LKKPKARDPNKR--EMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSLNQHDDEIEVD 248
           ++KP+ RD  K    +T+  +  L+     L AE+L NV +I+++    L    DEIE+D
Sbjct: 425 MRKPRRRDLTKEYGPITYAMQNELAERCNYLSAEQLSNVAEILREEMPWLRD-TDEIEID 483

Query: 249 IDSFDVETLWELDRFV 296
           + +   E    + R+V
Sbjct: 484 VGNMKPEVFHRIYRYV 499

>EAF7_CANAL (Q5A6Q7) Chromatin modification-related protein EAF7|
          Length = 445

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 29/107 (27%), Positives = 52/107 (48%)
 Frame = +3

Query: 144 NDLQDLPAEKLDNVVQIIKKRNSSLNQHDDEIEVDIDSFDVETLWELDRFVTNYKKSITK 323
           +D++D+  +K D  +  IKK N+S  Q +D+ +   +    E   E D    + ++S  K
Sbjct: 219 SDIEDVDKDKGDETIAKIKKENTS-EQEEDKNKKQTEEEAEEEEEEGDHVSGDERES--K 275

Query: 324 NKRKAELSVVRQDESDHEPDLEKIEHARHDEGEQNQMRTVHNTIPEP 464
           NK  +E      +E   E D+E IE +  D+  ++   +   + PEP
Sbjct: 276 NKDTSEDEDGEDNEDQDEDDVEVIEDSHTDKENES---SSEESSPEP 319

>Y1332_METJA (Q58728) Hypothetical GTP-binding protein MJ1332|
          Length = 393

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +3

Query: 111 EMTFWEKQRLSNDLQDLP--AEKLDNVVQIIKKRNSSLNQHDDEIEVDIDSFDVETLWEL 284
           E+  W    L+ +   L   A++  N+V+ +K + S LN  +D+I++ I   D   +   
Sbjct: 138 EIDMWIYSILTKNWDKLARRAQQEKNIVKALKDQLSGLNIDEDDIKMAIRDMDESPIKWT 197

Query: 285 DRFVTNYKKSITKNKRKAELSVVRQDESDHEPDLEKIE 398
           +  + N  K + K  +   ++  + D  D E ++E+++
Sbjct: 198 EEDLLNLAKKLRKISKPMIIAANKADHPDAEKNIERLK 235

>FKBP4_YEAST (Q06205) FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl|
           cis-trans isomerase) (PPIase) (Rotamase)
          Length = 392

 Score = 35.0 bits (79), Expect = 0.19
 Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 1/158 (0%)
 Frame = +3

Query: 96  DPNKREMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSLNQHDDEIEVDIDSFDVETL 275
           D ++ E  ++  +  SN  ++   E+ D+           L+  DD+++  +D+ D+E+ 
Sbjct: 173 DSDEDEEDYYSDEESSNGEEEEEEEEEDD---------EELSSGDDDLDDLVDASDIES- 222

Query: 276 WELDRFVTNYKKSITK-NKRKAELSVVRQDESDHEPDLEKIEHARHDEGEQNQMRTVHNT 452
             LD  V   KK   K N +K       +DE +     EK +  + D+ +  +++    +
Sbjct: 223 -RLDELV---KKDEKKKNNKKDSKRKHEEDEEESAKPAEKKQTTKKDK-KAEKVKDSEES 277

Query: 453 IPEPEAXXXXXXXXXEPLIVEAEPHKETAADDNGRYVG 566
            P+P+          E  +    PH +       RYVG
Sbjct: 278 KPKPKTKLLEGGIIIEDRVTGKGPHAKKGTRVGMRYVG 315

>LMNB1_RAT (P70615) Lamin-B1|
          Length = 586

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = +3

Query: 126 EKQRLSNDLQDLPAEKLDNVVQIIKKRNSSLNQHDDE--IEVDIDSFDVETLWELDRFVT 299
           +K+ L  DL+DL     D + Q+    +++  Q  DE  ++VD+++       +L+    
Sbjct: 154 DKKSLEGDLEDLK----DQIAQLEASLSAAKKQLADETLLKVDLENRCQSLTEDLEFRKN 209

Query: 300 NYKKSITKNKRKAELSVVRQDESDHEPDLEKIEHARHDEGEQN 428
            Y++ I + +RK E  +V  D         K+  A H+  EQ+
Sbjct: 210 MYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQH 252

>LMNB1_MOUSE (P14733) Lamin-B1|
          Length = 587

 Score = 33.9 bits (76), Expect = 0.43
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = +3

Query: 126 EKQRLSNDLQDLPAEKLDNVVQIIKKRNSSLNQHDDE--IEVDIDSFDVETLWELDRFVT 299
           +K+ L  DL+DL     D + Q+    +++  Q  DE  ++VD+++       +L+    
Sbjct: 155 DKKSLEGDLEDLK----DQIAQLEASLSAAKKQLADETLLKVDLENRCQSLTEDLEFRKN 210

Query: 300 NYKKSITKNKRKAELSVVRQDESDHEPDLEKIEHARHDEGEQN 428
            Y++ I + +RK E  +V  D         K+  A H+  EQ+
Sbjct: 211 MYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQH 253

>LMNB1_HUMAN (P20700) Lamin-B1|
          Length = 585

 Score = 33.1 bits (74), Expect = 0.73
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
 Frame = +3

Query: 126 EKQRLSNDLQDLPAEKLDNVVQIIKKRNSSLNQHDDE--IEVDIDSFDVETLWELDRFVT 299
           +K+ L  DL+DL     D + Q+     ++  Q  DE  ++VD+++       +L+   +
Sbjct: 154 DKKSLEGDLEDLK----DQIAQLEASLAAAKKQLADETLLKVDLENRCQSLTEDLEFRKS 209

Query: 300 NYKKSITKNKRKAELSVVRQDESDHEPDLEKIEHARHDEGEQN 428
            Y++ I + +RK E  +V  D         K+  A H+  EQ+
Sbjct: 210 MYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQALHEMREQH 252

>LETM1_HUMAN (O95202) Leucine zipper-EF-hand-containing transmembrane protein 1,|
           mitochondrial precursor
          Length = 739

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 18/62 (29%), Positives = 34/62 (54%)
 Frame = +3

Query: 240 EVDIDSFDVETLWELDRFVTNYKKSITKNKRKAELSVVRQDESDHEPDLEKIEHARHDEG 419
           E +I   +++ L +    +   KKS+TK K   EL ++++D  D+  DL++I+      G
Sbjct: 537 EEEITKEEIDILSDACSKLQEQKKSLTKEKE--ELELLKEDVQDYSEDLQEIKKELSKTG 594

Query: 420 EQ 425
           E+
Sbjct: 595 EE 596

>YO047_YEAST (Q08218) Uncharacterized protein YOL047C|
          Length = 356

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 18/86 (20%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
 Frame = -3

Query: 530 LMWFSFNNKWFNINHVNYINCFWFWNRIMYCAHLILLSLVMPGMLNLLQIRLMVGLILPY 351
           ++W+ +     ++ + +Y++ F+     +   + +L  L++    ++L   L+V + LP+
Sbjct: 75  IIWYPYKGISESVGNSDYLHLFF-----LIFGYYLLNLLLIVAFTSILAWSLLVCIYLPF 129

Query: 350 YGKLSLPLILSYTFLV---VCHKSIK 282
            G  +LPL    T L+   +C+  +K
Sbjct: 130 LGLFALPLAYMQTILISTTLCNSMVK 155

>CCD12_HUMAN (Q8WUD4) Coiled-coil domain-containing protein 12|
          Length = 166

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 7/100 (7%)
 Frame = +3

Query: 327 KRKAELSVVRQ-----DESDHEPDLEKIEHARHDE--GEQNQMRTVHNTIPEPEAXXXXX 485
           +RK  L  +R+     D+ D EP   K +H R +E  GE+++   + N +PE E      
Sbjct: 17  RRKERLKALREKTGRKDKEDGEP---KTKHLREEEEEGEKHRELRLRNYVPEDEDLKKRR 73

Query: 486 XXXXEPLIVEAEPHKETAADDNGRYVGSSSPAHLEDQKGD 605
               +P+ VE +  ++  A      +     A+L  +K D
Sbjct: 74  VPQAKPVAVEEKVKEQLEAAKPEPVIEEVDLANLAPRKPD 113

>COG8_YEAST (Q04632) Conserved oligomeric Golgi complex component 8|
          Length = 607

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 27/93 (29%), Positives = 43/93 (46%)
 Frame = +3

Query: 174 LDNVVQIIKKRNSSLNQHDDEIEVDIDSFDVETLWELDRFVTNYKKSITKNKRKAELSVV 353
           LDN  QII     ++ ++DD  ++D  +  +E LWELD   TN  K+  +N        V
Sbjct: 72  LDNTSQII----GNILENDDRAQLDDIAKSLEQLWELD---TNINKAADRN--------V 116

Query: 354 RQDESDHEPDLEKIEHARHDEGEQNQMRTVHNT 452
             D+ ++E     I+    D+ E N    +  T
Sbjct: 117 TNDDINNES--VSIDDFLEDDKEDNDTGRIMTT 147

>NOC3L_CAEBR (Q61LN7) Nucleolar complex protein 3 homolog (NOC3 protein homolog)|
           (NOC3-like protein) (Nucleolar complex-associated
           protein 3-like protein)
          Length = 779

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 41/177 (23%), Positives = 69/177 (38%), Gaps = 23/177 (12%)
 Frame = +3

Query: 72  VLKKPKARDPNKREMTFWEKQRLSNDLQD----LPAEKLDNVVQ--------IIKKRNSS 215
           ++K  K R   K      +K++LS +++D    + A K  ++ Q         I  R + 
Sbjct: 14  MMKTNKTRKTTKNLNRLAKKKKLSREIRDGMSDIKARKSADLRQRAVNIEDDFIADREAR 73

Query: 216 LNQHDDEIEVDIDSFDVETLWELDRFVTNYKKSITKNKRKAELSVVRQDESDHEPDLEKI 395
             ++DDE ++ +D  D +  WE   F  N K+ + + +     S   +DE D E    K 
Sbjct: 74  Y-ENDDEEDLPLDMMDADIDWENSAF-ANAKRRLDRKRNGGADSDEDEDEDDVETKKRKF 131

Query: 396 EHARHDEGEQNQM-----------RTVHNTIPEPEAXXXXXXXXXEPLIVEAEPHKE 533
              + +EG +  +            T    + E E          E    E EPHKE
Sbjct: 132 A-GQLEEGHEELLPIKLKDGTLIRPTREKEVEEQEEEEKSDIDEGE----EDEPHKE 183

>LETM1_MOUSE (Q9Z2I0) Leucine zipper-EF-hand containing transmembrane protein 1,|
           mitochondrial precursor
          Length = 738

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = +3

Query: 246 DIDSFDVETLWELDRFVTNYKKSITKNKRKAELSVVRQDESDHEPDLEKIEHARHDEGEQ 425
           +I   +++ L +    +   KKS+TK K   EL ++++D  D+  DL++I+      GE+
Sbjct: 538 EITKEEIDILSDACSKLQEQKKSLTKEKE--ELELLKEDVQDYSEDLQEIKKELSKTGEE 595

>DZIP1_BRARE (Q7T019) Zinc finger protein Dzip1 (DAZ-interacting protein 1|
           homolog) (Iguana protein)
          Length = 898

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
 Frame = +3

Query: 105 KREMTFW---EKQRLSNDLQDLPAEKLDNVVQIIKKRNSSLNQHDDEIEVDIDSFDVETL 275
           KR++  W   EK R+++        K+D V Q  ++   S+NQ +  +E ++     + +
Sbjct: 292 KRQLEIWKEEEKMRMNS--------KIDEVKQACQRDMDSINQRNRNLETELLKLQQKNI 343

Query: 276 WELDRFVTNYKKSITKNKRKAELSVVRQDESDHEPDLE--------KIEHARHDEGEQNQ 431
            E  + V     + T N+   E  VV+  +  H+ +++        K +H R     Q +
Sbjct: 344 QESMQSVQTQPNASTSNEHWQE--VVKLQQKLHKQEVKWTGKMQKMKEDHDREKSLLQEE 401

Query: 432 MRTVHNTIPE 461
           +  V + + E
Sbjct: 402 LCKVSSAVSE 411

>RASF8_HUMAN (Q8NHQ8) Ras association domain-containing protein 8|
           (Carcinoma-associated protein HOJ-1)
          Length = 419

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 29/152 (19%), Positives = 73/152 (48%), Gaps = 17/152 (11%)
 Frame = +3

Query: 63  RPPVLKKPKARDPNKREMTFWE-----------------KQRLSNDLQDLPAEKLDNVVQ 191
           RP + K  K R+P ++ +TF                   KQ++ N+ +   A++L  +++
Sbjct: 113 RPQIDKSIKRREPKRKSLTFTGGAKGLMDIFGKGKETEFKQKVLNNCK-TTADELKKLIR 171

Query: 192 IIKKRNSSLNQHDDEIEVDIDSFDVETLWELDRFVTNYKKSITKNKRKAELSVVRQDESD 371
           +  ++  S+ +  +  E++I        WE  ++ +N ++ I + ++K + + V  +E +
Sbjct: 172 LQTEKLQSIEKQLESNEIEI------RFWE-QKYNSNLEEEIVRLEQKIKRNDVEIEEEE 224

Query: 372 HEPDLEKIEHARHDEGEQNQMRTVHNTIPEPE 467
              +  +IE   +++  ++Q++ +   I E E
Sbjct: 225 FWENELQIEQ-ENEKQLKDQLQEIRQKITECE 255

>OPSB_CARAU (P32310) Blue-sensitive opsin (Blue cone photoreceptor pigment)|
          Length = 351

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
 Frame = -3

Query: 524 WFSFNNKWFNINHVNYINCFWF---WNRIMYCAHLILLSL 414
           W++ NNK+ N ++V ++ CF F   +  I++C   +L++L
Sbjct: 195 WYTTNNKYNNESYVMFLFCFCFAVPFGTIVFCYGQLLITL 234

>OP1S2_BRARE (Q9W6A8) Opsin-1, short-wave-sensitive 2 (Blue-sensitive opsin)|
           (Blue cone photoreceptor pigment) (Opsin SWS-2)
          Length = 354

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
 Frame = -3

Query: 524 WFSFNNKWFNINHVNYINCFWF---WNRIMYCAHLILLSL 414
           W++ NNK+ N ++V ++ CF F   ++ I++C   +L++L
Sbjct: 198 WYTTNNKFNNESYVMFLFCFCFAVPFSTIVFCYGQLLITL 237

>LETM1_RAT (Q5XIN6) Leucine zipper-EF-hand containing transmembrane protein 1,|
           mitochondrial precursor
          Length = 739

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 16/60 (26%), Positives = 33/60 (55%)
 Frame = +3

Query: 246 DIDSFDVETLWELDRFVTNYKKSITKNKRKAELSVVRQDESDHEPDLEKIEHARHDEGEQ 425
           +I   +++ L +    +   KKS+TK K   EL ++++D  D+  DL++I+      G++
Sbjct: 538 EITKEEIDILSDACSKLKEQKKSLTKEKE--ELELLKEDVQDYSEDLQEIKKELSKTGDE 595

>TRI34_HUMAN (Q9BYJ4) Tripartite motif protein 34 (Interferon-responsive finger|
           protein 1) (RING finger protein 21)
          Length = 488

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
 Frame = +3

Query: 168 EKLDNVVQIIKKRNSSLNQHDDEIEVDIDSFDVETLWELDRFVTNYK--KSITKNKRKAE 341
           EKL  V++ +KK      + + +I  +  S+  +   E  R  T +   +SI  N+ + E
Sbjct: 142 EKLQAVLKRLKKEEEEAEKLEADIREEKTSWKYQVQTERQRIQTEFDQLRSILNNEEQRE 201

Query: 342 LSVVRQDESDHEPDLEKIEHARHDEGEQNQM 434
           L  + ++E   +  L+K   A  +  +Q Q+
Sbjct: 202 LQRLEEEE---KKTLDKFAEAEDELVQQKQL 229

>Y567_COXBU (Q83DX5) UPF0054 protein CBU0567|
          Length = 152

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
 Frame = +3

Query: 261 DVETLWELDRFVTNYKKSITKNKRKAELSVVRQDESDHEPDLEKIEHARHDEGEQNQMRT 440
           D+ +L  ++++V    + I  +K K+ L++   D+   E   E  EH RH +G  N +  
Sbjct: 14  DLPSLSNIEQWVETALQFIVTDKNKSALTIRFIDK---EESTELNEHYRHKKGPTNVLSF 70

Query: 441 VHNTIPEPEAXXXXXXXXXEPLIVEA--EPHKETAA 542
               IP   +          PL+ E     HK T A
Sbjct: 71  PDEPIPGFPSESFGDLAICAPLVAEEAHAQHKTTEA 106

>LRP6_MOUSE (O88572) Low-density lipoprotein receptor-related protein 6 precursor|
          Length = 1613

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 399  AQSSPNPAHGRTHPALLRKAQPSAYS*LYFSCSLSQIYQAPIMSRHQSYLYQPQSHRH 226
            + SS +   G   PA+L      A    +++        +P  S H+SY Y+P S+RH
Sbjct: 1469 SSSSSSSTKGTYFPAILNPPPSPATERSHYTMEFGYSSNSP--STHRSYSYRPYSYRH 1524

>LRP6_HUMAN (O75581) Low-density lipoprotein receptor-related protein 6 precursor|
          Length = 1613

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 17/58 (29%), Positives = 27/58 (46%)
 Frame = -2

Query: 399  AQSSPNPAHGRTHPALLRKAQPSAYS*LYFSCSLSQIYQAPIMSRHQSYLYQPQSHRH 226
            + SS +   G   PA+L      A    +++        +P  S H+SY Y+P S+RH
Sbjct: 1469 SSSSSSSTKGTYFPAILNPPPSPATERSHYTMEFGYSSNSP--STHRSYSYRPYSYRH 1524

>Y255_RICPR (Q9ZDS0) Hypothetical protein RP255|
          Length = 381

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
 Frame = -3

Query: 485 VNYINCFWFWNRIMYCAHLILLSLVMPGMLNLLQIRLMVGLILPYY-------------- 348
           +N +  F  +N   + +H + L+     ++  ++++L+ G ++ Y               
Sbjct: 170 INILTEFLHYN---HTSHKLNLNSKFSSLIKNIELQLLTGFVVSYITLNILWYYEAFALK 226

Query: 347 ---GKLSLPLILSYTFLVVCHKSIKLP*CLD-IKAIYINLNLIVMLI 219
                ++L LIL Y FL +C   I +   L  I   + NL+L ++L+
Sbjct: 227 KQLALINLKLILKYIFLTICFAIIPICYILSKINKYFANLSLNIILL 273

>SRPK2_MOUSE (O54781) Serine/threonine-protein kinase SRPK2 (EC 2.7.11.1)|
           (Serine/arginine-rich protein-specific kinase 2)
           (SR-protein-specific kinase 2) (SFRS protein kinase 2)
          Length = 681

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 25/107 (23%), Positives = 43/107 (40%)
 Frame = +3

Query: 78  KKPKARDPNKREMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSLNQHDDEIEVDIDS 257
           KK K +   KR+    EK+    +  +  AE+      I     S     + + EV + +
Sbjct: 266 KKKKLKKKQKRQAELLEKRLQEIEELEREAERKILEENITSAEASGEQDGEYQPEVTLKA 325

Query: 258 FDVETLWELDRFVTNYKKSITKNKRKAELSVVRQDESDHEPDLEKIE 398
            D+E   E +    N +    + K  AE     +DE D E +L  ++
Sbjct: 326 ADLEDTTEEETAKDNGEVEDQEEKEDAEKENAEKDEDDVEQELANLD 372

>DYNA_CHICK (P35458) Dynactin-1 (150 kDa dynein-associated polypeptide) (DP-150)|
            (DAP-150) (p150-glued)
          Length = 1224

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 171  KLDNVVQIIKKRNSSLNQHDDEIEVDIDSFDVETLWELDRFVTNYKKSITKNKRKAELSV 350
            KLD    ++KK+     +  D ++ DID  + E + EL + + N  K   +  R A  S 
Sbjct: 990  KLDETQTLLKKKEKEFEETMDALQADIDQLESEKV-ELKQRLNNQSKRTIEGLRGAPASG 1048

Query: 351  V 353
            V
Sbjct: 1049 V 1049

>MTAL1_CANGA (Q874P0) Mating-type-like protein ALPHA1|
          Length = 191

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = +3

Query: 192 IIKKRNSSLNQHDDEIEVDIDSFDVETLWELDRFVTNYKKSITKNKRKAELS 347
           ++K+      +     E  I+  D+ET WE+D+F++++  +   N  K++ S
Sbjct: 66  LLKRIREERMKLTSSFESGINIIDIETSWEIDKFISHHFNTSIGNVLKSKSS 117

>SMC3_YEAST (P47037) Structural maintenance of chromosome 3 (DA-box protein SMC3)|
          Length = 1230

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +3

Query: 192  IIKKRNSSLNQHDDEIEVDIDSFDVETLWELDRFV--TNYKKSITKNKRKAELSVVRQ 359
            II ++N + N HD+ I+VD+D+   E+    D  +  T    S++ N ++ E   V Q
Sbjct: 1068 IIHRKNDNANDHDESIDVDMDAESNESQNGKDSEIMYTGVSISVSFNSKQNEQLHVEQ 1125

>MDN1_HUMAN (Q9NU22) Midasin (MIDAS-containing protein)|
          Length = 5596

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 30/131 (22%), Positives = 51/131 (38%), Gaps = 6/131 (4%)
 Frame = +3

Query: 96   DPNKREMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSLNQHDDEIEVD---IDSFDV 266
            D  K +    +  +   DL    A+KLD  +           + D++ E     +D  D 
Sbjct: 4748 DDEKSDSEGGDLDKHMGDLNGEEADKLDERLWGDDDEEEDEEEEDNKTEETGPGMDEEDS 4807

Query: 267  ETLWELDRFVT-NYKKSITKNKRKAELSVVRQDESDHEPDL--EKIEHARHDEGEQNQMR 437
            E + + D   + N  K  ++  +K E      D+     D   E+I+   +DE E +   
Sbjct: 4808 ELVAKDDNLDSGNSNKDKSQQDKKEEKEEAEADDGGQGEDKINEQIDERDYDENEVDPYH 4867

Query: 438  TVHNTIPEPEA 470
                 +PEPEA
Sbjct: 4868 GNQEKVPEPEA 4878

>ETFA_MEGEL (O85692) Electron transfer flavoprotein alpha-subunit (Alpha-ETF)|
           (Electron transfer flavoprotein large subunit) (ETFLS)
          Length = 338

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +3

Query: 48  QAGTARPPVLKKPKARDPNKREMTFWEKQRLSNDLQDLPAEKLDNVVQIIKKRNSSLNQH 227
           Q GT RP V KKP+A DP+       +K  LS+      A+ +   V++IK     +   
Sbjct: 160 QMGTVRPHVFKKPEA-DPSATGEVIEKKANLSD------ADFMTKFVELIKLGGEGVKIE 212

Query: 228 DDEIEV 245
           D ++ V
Sbjct: 213 DADVIV 218

>BRR2_YEAST (P32639) Pre-mRNA-splicing helicase BRR2 (EC 3.6.1.-) (Protein|
           Snu246)
          Length = 2163

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 25/111 (22%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
 Frame = +3

Query: 123 WEKQRLSNDL-QDLPAEKLDNVVQIIKKR----NSSLNQHDDEIE----VDIDSFDVETL 275
           W  + L ND+  DL     D  ++ +K+     + ++ +  ++I+    ++IDS     L
Sbjct: 126 WVTEVLGNDIPHDLIIGTADIFIRQLKENEENEDGNIEERKEKIQHELGINIDSLKFNEL 185

Query: 276 WELDRFVTNYKKSITKNKRKAELSVVRQDESDHEPDLEKIEHARHDEGEQN 428
            +L + +T+Y+     + ++A   +   ++SD E   E   +A    GE N
Sbjct: 186 VKLMKNITDYETHPDNSNKQAVAILADDEKSDEEEVTEMSNNANVLGGEIN 236


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,335,446
Number of Sequences: 219361
Number of extensions: 1533985
Number of successful extensions: 5505
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 5308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5494
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)