ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal9o19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
2dbj|AP003329.3| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
3gb|AF227240.1|AF227240 Rabbit oral papillomavirus, complete genome 46 0.15
4gb|M19497.1|RAPO1 Rabbit oral papillomavirus DNA fragment with E... 46 0.15
5gb|AY228794.1| Haematopus ater recombination activating protein ... 44 0.60
6gb|AY339111.1| Haematopus ostralegus recombination activating pr... 44 0.60
7ref|XM_720090.1| Plasmodium yoelii yoelii str. 17XNL neurofilame... 42 2.4
8gb|AC150391.2| Branchiostoma floridae clone CH302-119J21, comple... 40 9.3
9gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' reg... 40 9.3
10gb|AC159991.9| Mus musculus chromosome 1, clone RP23-413H17, com... 40 9.3
11gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118... 40 9.3
12ref|XM_745197.1| Aspergillus fumigatus Af293 hypothetical protei... 40 9.3
13emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete ... 40 9.3
14emb|BX640430.1| Bordetella parapertussis strain 12822, complete ... 40 9.3
15emb|BX640416.1| Bordetella pertussis strain Tohama I, complete g... 40 9.3
16gb|AY091013.1| Arabidopsis thaliana unknown protein (At1g03580) ... 40 9.3
17dbj|AB243297.1| Rhizosolenia setigera RNA virus RsRNAV ORF-1, Rs... 40 9.3
18gb|AC110616.4| Homo sapiens BAC clone RP11-597I10 from 4, comple... 40 9.3
19emb|BX682548.7| Zebrafish DNA sequence from clone DKEY-94A14 in ... 40 9.3
20dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
21gb|AC002560.2|AC002560 Genomic sequence for Arabidopsis thaliana... 40 9.3
22ref|NM_205829.1| Xenopus tropicalis hypothetical protein MGC7584... 40 9.3
23dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 9.3
24dbj|AK100687.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.3
25gb|BC066129.1| Xenopus tropicalis hypothetical protein MGC75848,... 40 9.3
26emb|CR761091.2| Xenopus tropicalis finished cDNA, clone TEgg073i18 40 9.3 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 192      tcgaggtgaaggctgtaccagaggagcaccgggacaacctccggcatgcaga 243
                ||||||||||||||| ||||||| ||| ||||||||| |||||||| |||||
Sbjct: 13564239 tcgaggtgaaggctggaccagagaagcgccgggacaagctccggcacgcaga 13564188
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>dbj|AP003329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1045F02
          Length = 215378

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                  
Query: 192    tcgaggtgaaggctgtaccagaggagcaccgggacaacctccggcatgcaga 243
              ||||||||||||||| ||||||| ||| ||||||||| |||||||| |||||
Sbjct: 118199 tcgaggtgaaggctggaccagagaagcgccgggacaagctccggcacgcaga 118148
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>gb|AF227240.1|AF227240 Rabbit oral papillomavirus, complete genome
          Length = 7565

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 312  aatgtcttgtggagcagctctgc 334
            |||||||||||||||||||||||
Sbjct: 4274 aatgtcttgtggagcagctctgc 4252
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>gb|M19497.1|RAPO1 Rabbit oral papillomavirus DNA fragment with E2 and E4 protein gene
           homologues
          Length = 1519

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 312 aatgtcttgtggagcagctctgc 334
           |||||||||||||||||||||||
Sbjct: 897 aatgtcttgtggagcagctctgc 875
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>gb|AY228794.1| Haematopus ater recombination activating protein 1 (RAG-1) gene,
            partial cds
          Length = 2871

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 52   accaggagagcccagaaacatc 73
            ||||||||||||||||||||||
Sbjct: 1105 accaggagagcccagaaacatc 1126
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>gb|AY339111.1| Haematopus ostralegus recombination activating protein gene,
           partial cds
          Length = 930

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 52  accaggagagcccagaaacatc 73
           ||||||||||||||||||||||
Sbjct: 148 accaggagagcccagaaacatc 169
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>ref|XM_720090.1| Plasmodium yoelii yoelii str. 17XNL neurofilament protein H form H2
            (PY04830) partial mRNA
          Length = 2436

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  tcaccagtagaagtagaagca 312
            |||||||||||||||||||||
Sbjct: 1981 tcaccagtagaagtagaagca 2001



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  tcaccagtagaagtagaagca 312
            |||||||||||||||||||||
Sbjct: 1945 tcaccagtagaagtagaagca 1965



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  tcaccagtagaagtagaagca 312
            |||||||||||||||||||||
Sbjct: 1909 tcaccagtagaagtagaagca 1929



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  tcaccagtagaagtagaagca 312
            |||||||||||||||||||||
Sbjct: 1873 tcaccagtagaagtagaagca 1893



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  tcaccagtagaagtagaagca 312
            |||||||||||||||||||||
Sbjct: 1765 tcaccagtagaagtagaagca 1785



 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 292  tcaccagtagaagtagaagca 312
            |||||||||||||||||||||
Sbjct: 1639 tcaccagtagaagtagaagca 1659
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>gb|AC150391.2| Branchiostoma floridae clone CH302-119J21, complete sequence
          Length = 157607

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   agtagaagtagaagcaatgt 316
             ||||||||||||||||||||
Sbjct: 81060 agtagaagtagaagcaatgt 81041
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>gb|AY234384.1|AY234384S1 Rubrivivax gelatinosus strain S1 5' region photosynthesis gene cluster,
             partial sequence
          Length = 24637

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   gcgcgtcagcgccgccaccg 402
             ||||||||||||||||||||
Sbjct: 12090 gcgcgtcagcgccgccaccg 12071
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>gb|AC159991.9| Mus musculus chromosome 1, clone RP23-413H17, complete sequence
          Length = 180715

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   caccgtggagctcaggaaca 417
             ||||||||||||||||||||
Sbjct: 97636 caccgtggagctcaggaaca 97617
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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    catagcagtatcatcatcaa 462
              ||||||||||||||||||||
Sbjct: 312513 catagcagtatcatcatcaa 312494
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>ref|XM_745197.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g05410)
           partial mRNA
          Length = 1854

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 407 gctcaggaacaagaggaact 426
           ||||||||||||||||||||
Sbjct: 538 gctcaggaacaagaggaact 557
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>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 383   gcgcgtcagcgccgccaccg 402
             ||||||||||||||||||||
Sbjct: 96198 gcgcgtcagcgccgccaccg 96179
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>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 383  gcgcgtcagcgccgccaccg 402
            ||||||||||||||||||||
Sbjct: 7100 gcgcgtcagcgccgccaccg 7081
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>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12
          Length = 349354

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 383    gcgcgtcagcgccgccaccg 402
              ||||||||||||||||||||
Sbjct: 292018 gcgcgtcagcgccgccaccg 291999
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>gb|AY091013.1| Arabidopsis thaliana unknown protein (At1g03580) mRNA, partial cds
          Length = 907

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 101 aggagctactaccagtgtac 120
           ||||||||||||||||||||
Sbjct: 475 aggagctactaccagtgtac 494
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>dbj|AB243297.1| Rhizosolenia setigera RNA virus RsRNAV ORF-1, RsRNAV ORF-2 genes for
            polyprotein, capsid proteins, complete cds
          Length = 8877

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 442  ccatagcagtatcatcatca 461
            ||||||||||||||||||||
Sbjct: 1444 ccatagcagtatcatcatca 1425
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>gb|AC110616.4| Homo sapiens BAC clone RP11-597I10 from 4, complete sequence
          Length = 80656

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 299   tagaagtagaagcaatgtcttgtg 322
             ||||||| ||||||||||||||||
Sbjct: 43667 tagaagtggaagcaatgtcttgtg 43690
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>emb|BX682548.7| Zebrafish DNA sequence from clone DKEY-94A14 in linkage group 2,
             complete sequence
          Length = 111741

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   cttcattttgacgacgctga 168
             ||||||||||||||||||||
Sbjct: 35523 cttcattttgacgacgctga 35542
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 197      gtgaaggctgtaccagaggagcac 220
                |||||||||||||| |||||||||
Sbjct: 20257864 gtgaaggctgtacctgaggagcac 20257841
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>gb|AC002560.2|AC002560 Genomic sequence for Arabidopsis thaliana BAC F21B7 from chromosome I,
             complete sequence
          Length = 101176

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 101   aggagctactaccagtgtac 120
             ||||||||||||||||||||
Sbjct: 57450 aggagctactaccagtgtac 57469
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>ref|NM_205829.1| Xenopus tropicalis hypothetical protein MGC75848 (MGC75848), mRNA
          Length = 2099

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 tcatcatcaagttgatccat 472
           ||||||||||||||||||||
Sbjct: 746 tcatcatcaagttgatccat 727
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     atccatggagttcaccatgt 90
              ||||||||||||||||||||
Sbjct: 483463 atccatggagttcaccatgt 483444
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>dbj|AK100687.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114A21, full
           insert sequence
          Length = 1335

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 197 gtgaaggctgtaccagaggagcac 220
           |||||||||||||| |||||||||
Sbjct: 583 gtgaaggctgtacctgaggagcac 606
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>gb|BC066129.1| Xenopus tropicalis hypothetical protein MGC75848, mRNA (cDNA clone
           MGC:75848 IMAGE:5382660), complete cds
          Length = 2099

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 tcatcatcaagttgatccat 472
           ||||||||||||||||||||
Sbjct: 746 tcatcatcaagttgatccat 727
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>emb|CR761091.2| Xenopus tropicalis finished cDNA, clone TEgg073i18
          Length = 2003

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 453 tcatcatcaagttgatccat 472
           ||||||||||||||||||||
Sbjct: 698 tcatcatcaagttgatccat 679


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,753,156
Number of Sequences: 3902068
Number of extensions: 4753156
Number of successful extensions: 107408
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107278
Number of HSP's gapped (non-prelim): 130
length of query: 683
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 660
effective length of database: 17,143,297,704
effective search space: 11314576484640
effective search space used: 11314576484640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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