>HSDR_STAS1 (Q4A127) Type-1 restriction enzyme R protein (EC 3.1.21.3) (Type I|
           restriction enzyme R protein)
          Length = 930

 Score = 32.7 bits (73), Expect = 0.78
 Identities = 20/80 (25%), Positives = 40/80 (50%)
 Frame = -2

Query: 363 VNINQIISRI*FYRK*IPIFVGVFTQICLFIIIVIIDTHHLSKSQTDFLDNGIIFRRCYS 184
           ++IN+  +++  YRK    + G+F  I LFII   IDT ++S +  +   + + +     
Sbjct: 144 IDINEAFNQVMRYRK--QNYTGLFRYIQLFIISNGIDTRYISNNDGEIYKSHMFYWSDKE 201

Query: 183 SFKLIIFRESTRAVLKTCFL 124
           + ++    E T   L+ C +
Sbjct: 202 NNRINTLNEFTETFLRPCHI 221

>NU6C_MESVI (Q9MUL3) NAD(P)H-quinone oxidoreductase chain 6, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 6)
           (NADH-plastoquinone oxidoreductase chain 6)
          Length = 189

 Score = 30.4 bits (67), Expect = 3.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -2

Query: 309 IFVGVFTQICLFIIIVIIDTHHLSKSQTDFLDNGIIFRRCYSSFKLI 169
           I+VG    I LF I+++    +L+ S    + NG+    C+S F L+
Sbjct: 65  IYVGAINVIILFAIMLVNKIENLNPSNNQMMRNGLSSFICFSFFILL 111

>PO3F4_RAT (P62516) POU domain, class 3, transcription factor 4|
           (Brain-specific homeobox/POU domain protein 4) (Brain-4)
           (Brn-4) (RHS2 class III POU protein)
          Length = 361

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = -3

Query: 197 ADAIPASNLSSSGRAQELCSKPAFSQMLRLRHEPLLTPSALQSTKG-------PPIH 48
           A   P S+++SSG+   + S+P F+    L H  L  P A  ST+        PP H
Sbjct: 116 ASPAPNSSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAASTQSLHPVLREPPDH 172

>PO3F4_MOUSE (P62515) POU domain, class 3, transcription factor 4|
           (Brain-specific homeobox/POU domain protein 4) (Brain-4)
           (Brn-4)
          Length = 361

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
 Frame = -3

Query: 197 ADAIPASNLSSSGRAQELCSKPAFSQMLRLRHEPLLTPSALQSTKG-------PPIH 48
           A   P S+++SSG+   + S+P F+    L H  L  P A  ST+        PP H
Sbjct: 116 ASPAPNSSITSSGQPLNVYSQPGFTVSGMLEHGGLTPPPAAASTQSLHPVLREPPDH 172

>MEF2B_MOUSE (O55087) Myocyte-specific enhancer factor 2B|
          Length = 349

 Score = 30.0 bits (66), Expect = 5.0
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -3

Query: 191 AIPASNLSSSGRAQELCSKPAFSQMLRLRHEPLLTPSALQSTKGPPIHKLNXEVRKELP 15
           A P  +    G    + S+PA+ +   L H P+ +PS L S   PP++      R +LP
Sbjct: 149 ATPGCDPGGLGEVPSVHSRPAYFRPPGLGH-PIFSPSHLASKTPPPLYLATDGRRPDLP 206

>CXA7_CHICK (P18861) Gap junction alpha-7 protein (Connexin-45) (Cx45)|
          Length = 394

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 471 FCNERKPCKAGNCHKVECFMGPPTYMILLLLLTH 572
           F   RKPC     HK++CF+  PT   + LL+ +
Sbjct: 208 FVCSRKPCP----HKIDCFISRPTEKTIFLLIMY 237

>FBLN1_CAEEL (O77469) Fibulin-1 precursor|
          Length = 728

 Score = 29.6 bits (65), Expect = 6.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +3

Query: 456 DSTVGFCNERKPCKAGNCHKVECFMGPPTY 545
           +   GFC +   C+ G C  +EC   P TY
Sbjct: 382 NGATGFCEDVNECQQGVCGSMECINLPGTY 411


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.130    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,386,925
Number of Sequences: 219361
Number of extensions: 1344557
Number of successful extensions: 3753
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3752
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4986986160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)