| Clone Name | bags16c23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187581.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1629 Score = 327 bits (165), Expect = 2e-86 Identities = 278/317 (87%) Strand = Plus / Plus Query: 1 gagaaagagatgatggggatggtaaagcgggaaacatnctttgcgtcacancgcacacca 60 ||||| || |||||||| ||||| ||||||||||| | ||| | || || | |||||| Sbjct: 1027 gagaaggaaatgatgggaatggtgaagcgggaaacttccttcacatctcaatgtacacca 1086 Query: 61 caagagatcatgtctaaaatagaggaagcctgnggccctcttggtttcaatgtgcggaaa 120 || |||||||||||||||||||||||||| || || |||||||||||||||||||||||| Sbjct: 1087 caggagatcatgtctaaaatagaggaagcttgtggacctcttggtttcaatgtgcggaaa 1146 Query: 121 caaaattataagatgaaactgaaaggtgacaagacaggaagaaaaggtcatttatctgta 180 ||||||||||||||||| | |||||||| ||||| ||||||||||| ||||||||||| Sbjct: 1147 caaaattataagatgaagttaaaaggtgataagactggaagaaaaggctatttatctgta 1206 Query: 181 gcaacggaggtttttgaggttgctccatcactccatatggttgaacttcgtaaaactgga 240 |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| Sbjct: 1207 gcaacggaggttttcgaggttgctccatcactccacatggttgagcttcgtaaaactgga 1266 Query: 241 ggagacaccttggagtttcacagtttctaccagaatntctcatcagaactaaaagacatt 300 || ||||| |||||||||||| ||||||| | ||| |||| ||||| |||||||||| Sbjct: 1267 ggggacacgctggagtttcacaatttctacaacaatttctcgtcagagttaaaagacata 1326 Query: 301 gtgtggaaaactgaatc 317 ||||||||| ||||||| Sbjct: 1327 gtgtggaaatctgaatc 1343
>gb|BT018583.1| Zea mays clone EL01N0446D08.d mRNA sequence Length = 1868 Score = 303 bits (153), Expect = 2e-79 Identities = 275/317 (86%) Strand = Plus / Plus Query: 1 gagaaagagatgatggggatggtaaagcgggaaacatnctttgcgtcacancgcacacca 60 ||||| ||||||||||| ||||||||| ||||||||| || |||| || | ||| || Sbjct: 1155 gagaaggagatgatgggaatggtaaagagggaaacatctttcacgtctcaatgtacagca 1214 Query: 61 caagagatcatgtctaaaatagaggaagcctgnggccctcttggtttcaatgtgcggaaa 120 || ||||||||||| ||||||||||| || || || || ||||||||||| ||||||||| Sbjct: 1215 caggagatcatgtcaaaaatagaggatgcatgtgggccacttggtttcaacgtgcggaaa 1274 Query: 121 caaaattataagatgaaactgaaaggtgacaagacaggaagaaaaggtcatttatctgta 180 |||||||| ||||||||| ||||||||||||| | |||||||||||||| |||||||| Sbjct: 1275 caaaattacaagatgaaattgaaaggtgacaaatccggaagaaaaggtcacttatctgtt 1334 Query: 181 gcaacggaggtttttgaggttgctccatcactccatatggttgaacttcgtaaaactgga 240 ||||| |||||||||||||||||||| ||||| || |||||||| ||||||||||||||| Sbjct: 1335 gcaactgaggtttttgaggttgctccttcacttcacatggttgagcttcgtaaaactgga 1394 Query: 241 ggagacaccttggagtttcacagtttctaccagaatntctcatcagaactaaaagacatt 300 |||||||| |||||||| |||| ||||||| ||||| |||||||||| || ||||| || Sbjct: 1395 ggagacacattggagttccacaatttctacaagaatttctcatcagagctgaaagatatc 1454 Query: 301 gtgtggaaaactgaatc 317 ||||||||| ||||||| Sbjct: 1455 gtgtggaaagctgaatc 1471
>gb|AY108362.1| Zea mays PCO079366 mRNA sequence Length = 632 Score = 244 bits (123), Expect = 2e-61 Identities = 229/265 (86%) Strand = Plus / Plus Query: 53 gcacaccacaagagatcatgtctaaaatagaggaagcctgnggccctcttggtttcaatg 112 ||||| |||| ||||||||| | ||||||||||| || || || || || |||||||| | Sbjct: 47 gcacagcacaggagatcatgacaaaaatagaggatgcatgtgggccactcggtttcaacg 106 Query: 113 tgcggaaacaaaattataagatgaaactgaaaggtgacaagacaggaagaaaaggtcatt 172 |||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||| | Sbjct: 107 tgcggaaacaaaattacaagatgaaattgaaaggtgacaaatctggaagaaaaggtcact 166 Query: 173 tatctgtagcaacggaggtttttgaggttgctccatcactccatatggttgaacttcgta 232 ||||||| ||||| ||||||||||||||||| |||||||| || |||||||| ||||||| Sbjct: 167 tatctgttgcaactgaggtttttgaggttgccccatcacttcacatggttgagcttcgta 226 Query: 233 aaactggaggagacaccttggagtttcacagtttctaccagaatntctcatcagaactaa 292 |||| ||||||||||| |||||||| ||||| |||||| |||| ||||||| || || | Sbjct: 227 aaaccggaggagacacattggagttccacagcttctacaagaacttctcatcggagctga 286 Query: 293 aagacattgtgtggaaaactgaatc 317 |||| || ||||||||| ||||||| Sbjct: 287 aagatatcgtgtggaaagctgaatc 311
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 125 bits (63), Expect = 1e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 55 acaccacaagagatcatgtctaaaatagaggaagcctgnggccctcttggtttcaatgtg 114 |||||||| |||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct: 1495530 acaccacaggagatcatgtctaaaatagaggaagcttgtggacctcttggtttcaatgtg 1495471 Query: 115 cggaaacaaaattataag 132 |||||||||||||||||| Sbjct: 1495470 cggaaacaaaattataag 1495453 Score = 101 bits (51), Expect = 2e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 188 aggtttttgaggttgctccatcactccatatggttgaacttcgtaaaactggaggagaca 247 ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 1495164 aggttttcgaggttgctccatcactccacatggttgagcttcgtaaaactggaggggaca 1495105 Query: 248 ccttggagtttcaca 262 | |||||||||||| Sbjct: 1495104 cgctggagtttcaca 1495090 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 142 aaaggtgacaagacaggaagaaaaggtcatttatctgtagcaacggaggt 191 |||||||| ||||| ||||||||||| |||||||||||||||||||||| Sbjct: 1495308 aaaggtgataagactggaagaaaaggctatttatctgtagcaacggaggt 1495259
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07, complete sequence Length = 117612 Score = 125 bits (63), Expect = 1e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 55 acaccacaagagatcatgtctaaaatagaggaagcctgnggccctcttggtttcaatgtg 114 |||||||| |||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct: 32703 acaccacaggagatcatgtctaaaatagaggaagcttgtggacctcttggtttcaatgtg 32644 Query: 115 cggaaacaaaattataag 132 |||||||||||||||||| Sbjct: 32643 cggaaacaaaattataag 32626 Score = 101 bits (51), Expect = 2e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 188 aggtttttgaggttgctccatcactccatatggttgaacttcgtaaaactggaggagaca 247 ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 32337 aggttttcgaggttgctccatcactccacatggttgagcttcgtaaaactggaggggaca 32278 Query: 248 ccttggagtttcaca 262 | |||||||||||| Sbjct: 32277 cgctggagtttcaca 32263 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 142 aaaggtgacaagacaggaagaaaaggtcatttatctgtagcaacggaggt 191 |||||||| ||||| ||||||||||| |||||||||||||||||||||| Sbjct: 32481 aaaggtgataagactggaagaaaaggctatttatctgtagcaacggaggt 32432
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 125 bits (63), Expect = 1e-25 Identities = 74/78 (94%) Strand = Plus / Minus Query: 55 acaccacaagagatcatgtctaaaatagaggaagcctgnggccctcttggtttcaatgtg 114 |||||||| |||||||||||||||||||||||||| || || |||||||||||||||||| Sbjct: 1495528 acaccacaggagatcatgtctaaaatagaggaagcttgtggacctcttggtttcaatgtg 1495469 Query: 115 cggaaacaaaattataag 132 |||||||||||||||||| Sbjct: 1495468 cggaaacaaaattataag 1495451 Score = 101 bits (51), Expect = 2e-18 Identities = 69/75 (92%) Strand = Plus / Minus Query: 188 aggtttttgaggttgctccatcactccatatggttgaacttcgtaaaactggaggagaca 247 ||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| |||| Sbjct: 1495162 aggttttcgaggttgctccatcactccacatggttgagcttcgtaaaactggaggggaca 1495103 Query: 248 ccttggagtttcaca 262 | |||||||||||| Sbjct: 1495102 cgctggagtttcaca 1495088 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 142 aaaggtgacaagacaggaagaaaaggtcatttatctgtagcaacggaggt 191 |||||||| ||||| ||||||||||| |||||||||||||||||||||| Sbjct: 1495306 aaaggtgataagactggaagaaaaggctatttatctgtagcaacggaggt 1495257
>gb|AF479060.1| Sandersonia aurantiaca putative serine threonine kinase mRNA, complete cds Length = 1051 Score = 107 bits (54), Expect = 3e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 103 ggtttcaatgtgcggaaacaaaattataagatgaaactgaaaggtgacaagacaggaaga 162 |||||||||||||| ||||| || || |||||||| | | ||||| || || ||||| Sbjct: 505 ggtttcaatgtgcgcaaacacaactacaagatgaatttacagggtgataaaaccggaagg 564 Query: 163 aaaggtcatttatctgtagcaacggaggtttttgaggttgctccatcactccatatggtt 222 || ||||| ||||||||||||| |||||||||||||| || || || || || |||||| Sbjct: 565 aagggtcacctatctgtagcaacagaggtttttgaggtagcgccttctcttcacatggtt 624 Query: 223 gaacttcgtaaaactggaggagacaccttggagtttca 260 ||||| |||||||||||||| ||||| ||||||||||| Sbjct: 625 gaactgcgtaaaactggaggcgacacgttggagtttca 662
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 gatggggatggtaaagcggga 32 ||||||||||||||||||||| Sbjct: 1046022 gatggggatggtaaagcggga 1046042
>gb|AC137067.33| Mus musculus strain C57BL/6J clone rp23-288i20, complete sequence Length = 207232 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 tataagatgaaactgaaaggt 147 ||||||||||||||||||||| Sbjct: 85210 tataagatgaaactgaaaggt 85190
>gb|AC127383.4| Homo sapiens BAC clone RP11-1388F24 from 2, complete sequence Length = 122168 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 ccatcactccatatggttgaa 225 ||||||||||||||||||||| Sbjct: 62666 ccatcactccatatggttgaa 62646
>gb|AC155640.5| Mus musculus 10 BAC RP24-87H21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 222712 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 158 gaagaaaaggtcatttatctg 178 ||||||||||||||||||||| Sbjct: 110961 gaagaaaaggtcatttatctg 110941
>ref|XM_522893.1| PREDICTED: Pan troglodytes similar to a disintegrin and metalloproteinase domain 20 preproprotein (LOC467496), mRNA Length = 2103 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 aaggtcatttatctgtagca 183 |||||||||||||||||||| Sbjct: 573 aaggtcatttatctgtagca 554
>ref|XM_516552.1| PREDICTED: Pan troglodytes similar to axonemal dynein heavy chain 7 (LOC460471), mRNA Length = 7941 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 aggaagaaaaggtcatttat 175 |||||||||||||||||||| Sbjct: 4958 aggaagaaaaggtcatttat 4977
>gb|AC116393.10| Mus musculus chromosome 15, clone RP23-94I16, complete sequence Length = 217156 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 gagaaagagatgatggggatggta 24 ||||||||||||||||| |||||| Sbjct: 105316 gagaaagagatgatgggaatggta 105339
>gb|AC146066.4| Pan troglodytes BAC clone RP43-60F19 from 7, complete sequence Length = 183557 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 aacaaaattataagatgaaa 138 |||||||||||||||||||| Sbjct: 121365 aacaaaattataagatgaaa 121384
>ref|NM_003814.4| Homo sapiens ADAM metallopeptidase domain 20 (ADAM20), mRNA Length = 2807 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 aaggtcatttatctgtagca 183 |||||||||||||||||||| Sbjct: 818 aaggtcatttatctgtagca 799
>gb|BC025378.1| Homo sapiens ADAM metallopeptidase domain 20, mRNA (cDNA clone MGC:25993 IMAGE:4827383), complete cds Length = 2810 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 aaggtcatttatctgtagca 183 |||||||||||||||||||| Sbjct: 821 aaggtcatttatctgtagca 802
>ref|XM_541831.2| PREDICTED: Canis familiaris similar to axonemal dynein heavy chain 7 (LOC484715), mRNA Length = 12076 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 156 aggaagaaaaggtcatttat 175 |||||||||||||||||||| Sbjct: 4931 aggaagaaaaggtcatttat 4950
>gb|AC121998.2| Mus musculus BAC clone RP24-318H5 from 2, complete sequence Length = 135317 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 aaacaaaattataagatgaaactg 141 |||||||| ||||||||||||||| Sbjct: 65748 aaacaaaactataagatgaaactg 65771
>gb|AC084389.1| Mus musculus BAC clone RP23-247A1 from 1, complete sequence Length = 206497 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 actgaaaggtgacaagacaggaag 161 |||||||||||||| ||||||||| Sbjct: 13797 actgaaaggtgacatgacaggaag 13774
>gb|AC003079.2| Homo sapiens BAC clone GS1-303P24 from 7, complete sequence Length = 62331 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 aacaaaattataagatgaaa 138 |||||||||||||||||||| Sbjct: 9774 aacaaaattataagatgaaa 9755
>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83 Length = 197859 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 304 tggaaaactgaatccaacac 323 |||||||||||||||||||| Sbjct: 37172 tggaaaactgaatccaacac 37191
>emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, BAC clone F23E12 (ESSA project) Length = 86710 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tggaaaactgaatccaacac 323 |||||||||||||||||||| Sbjct: 66179 tggaaaactgaatccaacac 66160
>emb|BX927211.4| Zebrafish DNA sequence from clone CH211-112A3, complete sequence Length = 65572 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 299 ttgtgtggaaaactgaatccaacacaat 326 |||||| ||||| ||||||||||||||| Sbjct: 33791 ttgtgttgaaaagtgaatccaacacaat 33764
>gb|AC008165.3|AC008165 Homo sapiens BAC clone RP11-139L10 from 7p22, complete sequence Length = 85404 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cattgtgtggaaaactgaat 316 |||||||||||||||||||| Sbjct: 21321 cattgtgtggaaaactgaat 21302
>gb|AC136777.8| Homo sapiens chromosome 8, clone RP11-63E5, complete sequence Length = 175263 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cattgtgtggaaaactgaat 316 |||||||||||||||||||| Sbjct: 64914 cattgtgtggaaaactgaat 64895
>gb|AC103954.9| Homo sapiens chromosome 8, clone CTA-366D10, complete sequence Length = 169754 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cattgtgtggaaaactgaat 316 |||||||||||||||||||| Sbjct: 57933 cattgtgtggaaaactgaat 57914
>gb|AC092418.3| Homo sapiens chromosome 3 clone RP11-229A12, complete sequence Length = 164500 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 aggaagaaaaggtcatttat 175 |||||||||||||||||||| Sbjct: 24067 aggaagaaaaggtcatttat 24048
>gb|AF158643.1|AF158643 Homo sapiens metalloproteinase-disintegrin (ADAM20) gene, complete cds Length = 3314 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 aaggtcatttatctgtagca 183 |||||||||||||||||||| Sbjct: 891 aaggtcatttatctgtagca 872
>emb|AL357153.4|CNS05TDV Human chromosome 14 DNA sequence BAC C-2540L5 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 209483 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 164 aaggtcatttatctgtagca 183 |||||||||||||||||||| Sbjct: 65777 aaggtcatttatctgtagca 65796
>gb|AF029899.1|AF029899 Homo sapiens ADAM 20 mRNA, complete cds Length = 2442 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 aaggtcatttatctgtagca 183 |||||||||||||||||||| Sbjct: 451 aaggtcatttatctgtagca 432
>emb|AL928665.8| Mouse DNA sequence from clone RP23-294O23 on chromosome 2, complete sequence Length = 81950 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 aaacaaaattataagatgaaactg 141 |||||||| ||||||||||||||| Sbjct: 37893 aaacaaaactataagatgaaactg 37870 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,708,910 Number of Sequences: 3902068 Number of extensions: 3708910 Number of successful extensions: 69390 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69301 Number of HSP's gapped (non-prelim): 86 length of query: 406 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 384 effective length of database: 17,147,199,772 effective search space: 6584524712448 effective search space used: 6584524712448 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)