ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags16c19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.090
2dbj|AP004375.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.090
3dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.090
4gb|AC160054.2| Gallus gallus BAC clone TAM32-10H18 from chromoso... 40 0.35
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.35
6dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.35
7emb|AJ852537.1| Triticum aestivum ltp9.3b gene for type 1 non sp... 40 0.35
8emb|AL954360.3| Human DNA sequence from clone RP11-98I6 on chrom... 38 1.4
9emb|AL672187.12| Human DNA sequence from clone RP11-592B15 on ch... 38 1.4
10emb|AL450382.7| Human DNA sequence from clone RP11-56A21 on chro... 38 1.4
11emb|AL442003.8| Human DNA sequence from clone RP11-324H6 on chro... 38 1.4
12gb|AC012044.15| Homo sapiens chromosome 10 clone RP11-175I17, co... 38 1.4
13gb|AC182581.3| Pan troglodytes BAC clone CH251-711L14 from chrom... 38 1.4
14gb|AC093810.4| Homo sapiens BAC clone RP11-354O24 from 4, comple... 38 1.4
15gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome... 36 5.5
16gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome... 36 5.5
17gb|AC164303.2| Mus musculus BAC clone RP24-530J21 from chromosom... 36 5.5
18ref|XM_603537.2| PREDICTED: Bos taurus similar to StAR-related l... 36 5.5
19gb|AC150284.1| Latimeria menadoensis clone VMRC4-44H8, complete ... 36 5.5
20gb|AC150283.1| Latimeria menadoensis clone VMRC4-188C23, complet... 36 5.5
21ref|XM_549052.2| PREDICTED: Canis familiaris similar to StAR-rel... 36 5.5
22emb|CT010430.6| Mouse DNA sequence from clone RP23-335P18 on chr... 36 5.5
23gb|AC127304.4| Mus musculus BAC clone RP23-285C13 from chromosom... 36 5.5
24emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A stra... 36 5.5
25emb|AJ391284.1|NME391284 Neisseria meningitidis DNA for region 2... 36 5.5
26emb|AJ391255.1|NME391255 Neisseria meningitidis DNA for region 2... 36 5.5
27gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence 36 5.5
28gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 gen... 36 5.5
29gb|AC157567.6| Mus musculus chromosome 5, clone RP23-246I12, com... 36 5.5
30gb|AE002098.2| Neisseria meningitidis MC58, complete genome 36 5.5
31dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 36 5.5
32dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 36 5.5
33dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 36 5.5
34gb|AC104592.6| Homo sapiens chromosome 8, clone RP11-714N16, com... 36 5.5
35dbj|AB072290.1| Ipomoea nil transposon Tpn123 DNA, complete sequ... 36 5.5
36dbj|AB072273.1| Ipomoea nil transposon Tpn103 DNA, complete sequ... 36 5.5
37dbj|AP005312.2| Oryza sativa (japonica cultivar-group) genomic D... 36 5.5
38emb|AL954636.9| Mouse DNA sequence from clone RP23-73M10 on chro... 36 5.5
39gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 36 5.5
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 36 5.5
41emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058... 36 5.5
42gb|AC151288.3| Mus musculus BAC clone RP23-340K6 from chromosome... 36 5.5
43gb|AC163446.2| Mus musculus chromosome 5, clone RP23-151G22, com... 36 5.5
44dbj|D37795.1| Ipomoea nil Tpn1 gene 36 5.5
45dbj|AB073922.1| Ipomoea nil transposon Tpn9/Tpn1-v1 DNA, complet... 36 5.5 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.090
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 6        aaattgggggccctgtgcagg 26
                |||||||||||||||||||||
Sbjct: 15960987 aaattgggggccctgtgcagg 15961007
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>dbj|AP004375.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0475C12
          Length = 140863

 Score = 42.1 bits (21), Expect = 0.090
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     aaattgggggccctgtgcagg 26
             |||||||||||||||||||||
Sbjct: 33026 aaattgggggccctgtgcagg 33046
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>dbj|AP005512.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0012O03
          Length = 141860

 Score = 42.1 bits (21), Expect = 0.090
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      aaattgggggccctgtgcagg 26
              |||||||||||||||||||||
Sbjct: 141030 aaattgggggccctgtgcagg 141050
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>gb|AC160054.2| Gallus gallus BAC clone TAM32-10H18 from chromosome unknown, complete
              sequence
          Length = 173827

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     ggggccctgtgcaggtgcac 31
              ||||||||||||||||||||
Sbjct: 127380 ggggccctgtgcaggtgcac 127361
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 6       aaattgggggccctgtgcaggtgc 29
               |||| |||||||||||||||||||
Sbjct: 8930317 aaatcgggggccctgtgcaggtgc 8930294



 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 6        aaattgggggccctgtgc 23
                ||||||||||||||||||
Sbjct: 12949653 aaattgggggccctgtgc 12949670
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>dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0045M11
          Length = 159148

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 6     aaattgggggccctgtgcaggtgc 29
             |||| |||||||||||||||||||
Sbjct: 90624 aaatcgggggccctgtgcaggtgc 90601
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>emb|AJ852537.1| Triticum aestivum ltp9.3b gene for type 1 non specific lipid
           transfer protein precursor, exons 1-2
          Length = 1908

 Score = 40.1 bits (20), Expect = 0.35
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 9   ttgggggccctgtgcaggtgcaca 32
           ||||||||||||||||| ||||||
Sbjct: 169 ttgggggccctgtgcagctgcaca 192
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>emb|AL954360.3| Human DNA sequence from clone RP11-98I6 on chromosome 10 Contains a
             novel protein similar to KIAA0592, solute carrier family 9
             member 3 (SLC9A3) pseudogene and novel protein similar to
             N-acylsphingosine amidohydrolase (non-lysosomal
             ceramidase) 2 (ASAH2), complete sequence
          Length = 163231

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 7     aattgggggccctgtgcaggtgc 29
             ||||| |||||||||||||||||
Sbjct: 68709 aattgagggccctgtgcaggtgc 68731
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>emb|AL672187.12| Human DNA sequence from clone RP11-592B15 on chromosome 10 Contains the
             gene for a novel protein similar to ARF GTPase-activating
             protein (MRIP2), a poly (ADP-ribose) glycohydrolase (PARG)
             pseudogene, a novel gene, gene LOC347774, a novel gene, a
             ribosomal protein L35a (RPL35A) pseudogene, the TIMM23B
             gene for translocase of inner mitochondrial membrane 23
             homolog B (yeast) and two CpG islands, complete sequence
          Length = 211435

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 7     aattgggggccctgtgcaggtgc 29
             ||||| |||||||||||||||||
Sbjct: 16361 aattgagggccctgtgcaggtgc 16383
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>emb|AL450382.7| Human DNA sequence from clone RP11-56A21 on chromosome 10 Contains part
             of gene FLJ10824, a solute carrier family 9
             (sodium/hydrogen exchanger) isoform 5 (SLC9A5) pseudogene,
             the ASAH2 gene for N-acylsphingosine amidohydrolase
             (non-lysosomal ceramidase) 2 and a dynein cytoplasmic
             intermediate polypeptide 2 (DNCI2) pseudogene, complete
             sequence
          Length = 162228

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 7     aattgggggccctgtgcaggtgc 29
             ||||| |||||||||||||||||
Sbjct: 20539 aattgagggccctgtgcaggtgc 20561
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>emb|AL442003.8| Human DNA sequence from clone RP11-324H6 on chromosome 10 Contains the
             gene for a novel protein similar to ARF GTPase-activating
             protein (MRIP2), the 3' end of the gene for translocase of
             inner mitochondrial membrane 23 (TIMM23), a novel gene, a
             solute carrier family 9 isoform 3 (SLC9A3) pseudogene, a
             novel gene, the 5' end of gene FLJ10824, a pseudogene
             similar to part of KIAA0592/FLJ10824 and two CpG islands,
             complete sequence
          Length = 163570

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 7     aattgggggccctgtgcaggtgc 29
             ||||| |||||||||||||||||
Sbjct: 70983 aattgagggccctgtgcaggtgc 70961
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>gb|AC012044.15| Homo sapiens chromosome 10 clone RP11-175I17, complete sequence
          Length = 172110

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 7      aattgggggccctgtgcaggtgc 29
              ||||| |||||||||||||||||
Sbjct: 126822 aattgagggccctgtgcaggtgc 126800
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>gb|AC182581.3| Pan troglodytes BAC clone CH251-711L14 from chromosome 10, complete
             sequence
          Length = 197345

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 7     aattgggggccctgtgcaggtgc 29
             ||||| |||||||||||||||||
Sbjct: 22723 aattgagggccctgtgcaggtgc 22745
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>gb|AC093810.4| Homo sapiens BAC clone RP11-354O24 from 4, complete sequence
          Length = 146671

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     aaacaaattgggggccctg 20
             |||||||||||||||||||
Sbjct: 36327 aaacaaattgggggccctg 36345
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>gb|AC093088.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1001_G01,
             complete sequence
          Length = 122768

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     aaattgggggccctgtgc 23
             ||||||||||||||||||
Sbjct: 49302 aaattgggggccctgtgc 49319
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>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017K09, complete sequence
          Length = 155525

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     aaattgggggccctgtgc 23
             ||||||||||||||||||
Sbjct: 23481 aaattgggggccctgtgc 23498
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>gb|AC164303.2| Mus musculus BAC clone RP24-530J21 from chromosome 14, complete sequence
          Length = 164905

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 12     ggggccctgtgcaggtgc 29
              ||||||||||||||||||
Sbjct: 146557 ggggccctgtgcaggtgc 146574
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>ref|XM_603537.2| PREDICTED: Bos taurus similar to StAR-related lipid transfer
           protein 8 (StARD8) (START domain-containing protein 8)
           (LOC525189), partial mRNA
          Length = 1410

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 9   ttgggggccctgtgcagg 26
           ||||||||||||||||||
Sbjct: 202 ttgggggccctgtgcagg 219
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>gb|AC150284.1| Latimeria menadoensis clone VMRC4-44H8, complete sequence
          Length = 187607

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      attgggggccctgtgcag 25
              ||||||||||||||||||
Sbjct: 130027 attgggggccctgtgcag 130044
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>gb|AC150283.1| Latimeria menadoensis clone VMRC4-188C23, complete sequence
          Length = 171414

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 8      attgggggccctgtgcag 25
              ||||||||||||||||||
Sbjct: 147523 attgggggccctgtgcag 147540
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>ref|XM_549052.2| PREDICTED: Canis familiaris similar to StAR-related lipid transfer
           protein 8 (StARD8) (START domain-containing protein 8)
           (LOC491932), mRNA
          Length = 3258

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 9   ttgggggccctgtgcagg 26
           ||||||||||||||||||
Sbjct: 151 ttgggggccctgtgcagg 168
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>emb|CT010430.6| Mouse DNA sequence from clone RP23-335P18 on chromosome 17, complete
              sequence
          Length = 156683

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 2      aaacaaattgggggccct 19
              ||||||||||||||||||
Sbjct: 115755 aaacaaattgggggccct 115738
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>gb|AC127304.4| Mus musculus BAC clone RP23-285C13 from chromosome 3, complete sequence
          Length = 151365

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    ctgtgcaggtgcacatct 35
             ||||||||||||||||||
Sbjct: 79440 ctgtgcaggtgcacatct 79423
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>emb|AL162753.2|NMA2Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome; segment
              2/7
          Length = 349061

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                   
Query: 19     tgtgcaggtgcacatctngca 39
              ||||||||||||||||| |||
Sbjct: 348425 tgtgcaggtgcacatcttgca 348445
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>emb|AJ391284.1|NME391284 Neisseria meningitidis DNA for region 2 (fhaB- and fhaC-homologs,
             unknown genes) and flanking genes, strain FAM18
          Length = 25543

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 19    tgtgcaggtgcacatctngca 39
             ||||||||||||||||| |||
Sbjct: 23784 tgtgcaggtgcacatcttgca 23804
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>emb|AJ391255.1|NME391255 Neisseria meningitidis DNA for region 2 (fhaB- and fhaC-homologs,
             unknown genes) and flanking genes, strain Z2491
          Length = 23723

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 19    tgtgcaggtgcacatctngca 39
             ||||||||||||||||| |||
Sbjct: 21096 tgtgcaggtgcacatcttgca 21116
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>gb|AC122175.9| Pan troglodytes clone rp43-99g12, complete sequence
          Length = 196097

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 11    gggggccctgtgcaggtg 28
             ||||||||||||||||||
Sbjct: 96601 gggggccctgtgcaggtg 96618
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>gb|AC025296.10| Oryza sativa chromosome 10 BAC OSJNBa0076F20 genomic sequence, complete
             sequence
          Length = 165394

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     aaattgggggccctgtgc 23
             ||||||||||||||||||
Sbjct: 91137 aaattgggggccctgtgc 91154
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>gb|AC157567.6| Mus musculus chromosome 5, clone RP23-246I12, complete sequence
          Length = 157519

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 3     aacaaattgggggccctg 20
             ||||||||||||||||||
Sbjct: 34206 aacaaattgggggccctg 34223
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                   
Query: 19     tgtgcaggtgcacatctngca 39
              ||||||||||||||||| |||
Sbjct: 542825 tgtgcaggtgcacatcttgca 542845
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 6        aaattgggggccctgtgc 23
                ||||||||||||||||||
Sbjct: 24395152 aaattgggggccctgtgc 24395169
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 6        aaattgggggccctgtgc 23
                ||||||||||||||||||
Sbjct: 19463271 aaattgggggccctgtgc 19463288
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 6        aaattgggggccctgtgc 23
                ||||||||||||||||||
Sbjct: 24509299 aaattgggggccctgtgc 24509316



 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 6       aaattgggggccctgtgc 23
               ||||||||||||||||||
Sbjct: 1093691 aaattgggggccctgtgc 1093708
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>gb|AC104592.6| Homo sapiens chromosome 8, clone RP11-714N16, complete sequence
          Length = 154338

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 11     gggggccctgtgcaggtg 28
              ||||||||||||||||||
Sbjct: 114999 gggggccctgtgcaggtg 114982
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>dbj|AB072290.1| Ipomoea nil transposon Tpn123 DNA, complete sequence
          Length = 6416

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    aaattgggggccctgtgc 23
            ||||||||||||||||||
Sbjct: 1249 aaattgggggccctgtgc 1266
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>dbj|AB072273.1| Ipomoea nil transposon Tpn103 DNA, complete sequence
          Length = 5199

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    aaattgggggccctgtgc 23
            ||||||||||||||||||
Sbjct: 1303 aaattgggggccctgtgc 1320
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>dbj|AP005312.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0505H05
          Length = 152845

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 6      aaattgggggccctgtgc 23
              ||||||||||||||||||
Sbjct: 111637 aaattgggggccctgtgc 111654
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>emb|AL954636.9| Mouse DNA sequence from clone RP23-73M10 on chromosome X, complete
             sequence
          Length = 104268

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 10    tgggggccctgtgcaggt 27
             ||||||||||||||||||
Sbjct: 56154 tgggggccctgtgcaggt 56171
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 6        aaattgggggccctgtgc 23
                ||||||||||||||||||
Sbjct: 19474547 aaattgggggccctgtgc 19474564
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                  
Query: 6        aaattgggggccctgtgc 23
                ||||||||||||||||||
Sbjct: 24323358 aaattgggggccctgtgc 24323375
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>emb|AL772423.4|CNS08CA1 Oryza sativa chromosome 12, . BAC OJ1058_H10 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 103803

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 6     aaattgggggccctgtgc 23
             ||||||||||||||||||
Sbjct: 58684 aaattgggggccctgtgc 58701
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>gb|AC151288.3| Mus musculus BAC clone RP23-340K6 from chromosome 17, complete sequence
          Length = 227155

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      aaacaaattgggggccct 19
              ||||||||||||||||||
Sbjct: 121982 aaacaaattgggggccct 121999
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>gb|AC163446.2| Mus musculus chromosome 5, clone RP23-151G22, complete sequence
          Length = 190466

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 3      aacaaattgggggccctg 20
              ||||||||||||||||||
Sbjct: 100610 aacaaattgggggccctg 100627
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>dbj|D37795.1| Ipomoea nil Tpn1 gene
          Length = 6412

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    aaattgggggccctgtgc 23
            ||||||||||||||||||
Sbjct: 1249 aaattgggggccctgtgc 1266
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>dbj|AB073922.1| Ipomoea nil transposon Tpn9/Tpn1-v1 DNA, complete sequence
          Length = 6422

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    aaattgggggccctgtgc 23
            ||||||||||||||||||
Sbjct: 1250 aaattgggggccctgtgc 1267


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 277,449
Number of Sequences: 3902068
Number of extensions: 277449
Number of successful extensions: 103386
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103223
Number of HSP's gapped (non-prelim): 163
length of query: 45
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 25
effective length of database: 17,155,003,908
effective search space: 428875097700
effective search space used: 428875097700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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