>CO8B_HUMAN (P07358) Complement component C8 beta chain precursor (Complement|
           component 8 beta subunit)
          Length = 591

 Score = 33.1 bits (74), Expect = 0.71
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 505 CLFPPGSSGHSSMDTDEAGGSRFYAWERD-RFAPYPLMPVDCETSWWSS 362
           CL  PGS G           ++ +A  R  R     LMP+DCE S WSS
Sbjct: 24  CLSLPGSRGERPHSFGSNAVNKSFAKSRQMRSVDVTLMPIDCELSSWSS 72

>KCNQ2_RAT (O88943) Potassium voltage-gated channel subfamily KQT member 2|
           (Voltage-gated potassium channel subunit Kv7.2)
           (Potassium channel alpha subunit KvLQT2) (KQT-like 2)
          Length = 852

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 18/101 (17%)
 Frame = -2

Query: 496 PPGSSGHSSMDTDEAGG-------SRFYAWERDRFAPYPLMPVDC--ETSWWSSQQSHGA 344
           PP  S   S D  +  G       S     +R   AP  + P +C   TSW  S Q HG 
Sbjct: 651 PPYHSPEDSRDHADKHGCIIKIVRSTSSTGQRKYAAPPVMPPAECPPSTSWQQSHQRHGT 710

Query: 343 S---------ESTPAPAPRRLFGQWIGLGRSSPENRSPEGS 248
           S            P PA  R    + G  R+S E    EG+
Sbjct: 711 SPVGDHGSLVRIPPPPAHERSLSAYSGGNRASTEFLRLEGT 751

>RAVR1_HUMAN (Q8IY67) Protein raver-1|
          Length = 606

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
 Frame = -2

Query: 493 PGSSGHSSMDTDEAGGSRFYAWERDRFAPYPLMPVDCETSWWSSQQSHGASEST------ 332
           PG +GHS +    AGG     WE    AP P  P+    +  S  + H A+ +       
Sbjct: 525 PGPNGHSHLLKVRAGGGDMQGWE----APAPQRPL-TRPALPSVSRPHWAARNAALPTCC 579

Query: 331 PAPAPRRLFGQWIGLGRSS 275
           P P+P +    W    R+S
Sbjct: 580 PRPSPAQKAAMWASTPRAS 598

>HXABA_BRARE (Q9DDU0) Homeobox protein Hox-A11a|
          Length = 284

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 382 ETSWWSSQQSHGASESTPAPAPRRLFGQWIGLGRSSPENRSPEGSS 245
           +  + +  + H + +STPAPAP +        G+  PE  SPE SS
Sbjct: 156 DNDYAARDKMHSSKQSTPAPAPEQQ-----PEGKERPETSSPESSS 196

>GON2_SUNMU (O97686) Progonadoliberin-2 precursor (Progonadoliberin II)|
           [Contains: Gonadoliberin-2 (Gonadoliberin II)
           (Luteinizing hormone-releasing hormone II) (LH-RH II)
           (Gonadotropin-releasing hormone II) (GnRH II) (Luliberin
           II); GnRH-associated pepti
          Length = 110

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 409 PYPLMPVDCETSWWSSQQSHGASESTPAPAPRRLFGQWIGLGRSSP 272
           P PL        W+   +    S   P PAPR   G W+GL   +P
Sbjct: 21  PGPLKAQHWSHGWYPGGKRSPDSPQDPQPAPRFPEGYWLGLAAGNP 66

>CT085_MOUSE (Q9DA42) Protein C20orf85 homolog|
          Length = 136

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)
 Frame = +3

Query: 3   LIXNMYETELHKPTKRFPSRLF--HVSPLQNSPEVQRTTRFKFHTDGFFPIFSYKQLRFQ 176
           L+    E +  KP    PS  +   VSP+    ++  +      T GF    S K   + 
Sbjct: 51  LLEGEEEPQTPKPKPELPSHFYVRPVSPMDKHIKILPSPPVPKTTQGFIGWRSGKPALYC 110

Query: 177 MSSFNLGCLCRGGYIRGEC 233
           +  ++  C C+G Y R  C
Sbjct: 111 LEKYSEVCSCKGAYARELC 129

>HSCB_NEIMA (Q9JTW6) Co-chaperone protein hscB homolog|
          Length = 166

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
 Frame = +3

Query: 63  LFHVSPL-----QNSPEVQRTTRFKFHTDGFFPIFSYKQLRFQMSSFNLGC--------L 203
           LF + P      +N  +  R    +FH D F    +++Q +  M S  +          +
Sbjct: 7   LFRIEPAFDIDTENLEQTYRALAARFHPDKFASASAFEQKQAVMMSSTINDAYRTLKNPI 66

Query: 204 CRGGYIRGECICRYDEPSGDLFSGDDLPRPIHWPKSLLGAGAGVDSDA 347
            R  Y+        D P    F+ + L + + W ++L+ A AG D ++
Sbjct: 67  DRAAYLLKTSGIDADAPEHTSFASEFLMQQMEWRETLMEARAGKDLES 114

>NXF3_HUMAN (Q9H4D5) Nuclear RNA export factor 3 (TAP-like protein 3) (TAPL-3)|
          Length = 531

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = -2

Query: 496 PPGSSGHSSMDTDEAGGSRFYAWERD---RFAPYPLMPVDCETSWWSSQQSHGASESTPA 326
           P     HSS    + G +  +    D   R+ PY + P + + S+    Q+H   E    
Sbjct: 36  PVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQK 95

Query: 325 PAPRRLFG 302
           P  RR+ G
Sbjct: 96  PPERRMEG 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,907,649
Number of Sequences: 219361
Number of extensions: 2319976
Number of successful extensions: 5507
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5501
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)