ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16c18 |
|---|---|
| Clone Library Name | barley_pub |
>DNJ10_ARATH (Q8GYX8) Chaperone protein dnaJ 10 (AtJ10) (AtDjC10)| Length = 398 Score = 201 bits (512), Expect = 1e-51 Identities = 107/191 (56%), Positives = 141/191 (73%), Gaps = 2/191 (1%) Frame = +3 Query: 27 KEAYDKHGKEGLSQENMVDPAAVFGMLFGSDYFEDYVGQLALASIASVEVDEGLSSQDAR 206 ++AYD GK G+S + ++DPAA+F MLFGS+ FE Y+GQLA+AS+AS+++ D + Sbjct: 64 RQAYDACGKSGISTDAIIDPAAIFAMLFGSELFEGYIGQLAMASMASLDIFTEGDQFDTK 123 Query: 207 AKVQEKIKGLQTEREQKLTQSLKDRLQPYVDGRKDDFVHWANAEAKRLSEAAFGEAMLHT 386 K+QEK++ +Q ERE KL Q LKDRL YV KD+F+ A AE RLS AA+G ML+T Sbjct: 124 -KIQEKLRIVQKEREDKLAQILKDRLNEYVIN-KDEFISNAEAEVARLSNAAYGVDMLNT 181 Query: 387 VGYIYVRQASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKV- 563 +GYIYVRQA++ELGK +Y+GVPFIAEW R+KGH IKSQ+ AA+GA AL QLQ+ MK+ Sbjct: 182 IGYIYVRQAAKELGKKAIYLGVPFIAEWFRNKGHFIKSQLTAATGAYALFQLQEEMKRQL 241 Query: 564 -EEGANKEEQL 593 EG EE+L Sbjct: 242 NTEGNYTEEEL 252
>CAJ1_YEAST (P39101) Protein CAJ1| Length = 391 Score = 48.9 bits (115), Expect = 1e-05 Identities = 45/225 (20%), Positives = 91/225 (40%), Gaps = 46/225 (20%) Frame = +3 Query: 27 KEAYDKHGKE-GLSQENMVDPAAVFGMLFGSDYFEDYVGQLAL----------------A 155 + YD+ GKE + Q+ D + F +FG D F+D++G+ +L Sbjct: 64 RSKYDQFGKEDAVPQQGFEDASEYFTAIFGGDGFKDWIGEFSLFKELNEATEMFGKEDEE 123 Query: 156 SIASVEVD------------------EGLSSQDARAKVQEKIKGLQTEREQ-------KL 260 A+ E + E L + +EK+ ++ +R + +L Sbjct: 124 GTAATETEKADESTDGGMVKHDTNKAESLKKDKLSKEQREKLMEMEKKRREDMMKQVDEL 183 Query: 261 TQSLKDRLQPYVDGRK----DDFVHWANAEAKRLSEAAFGEAMLHTVGYIYVRQASRELG 428 + L +++ Y+ K ++F + E + L +FG +L+ + +Y +A+ + Sbjct: 184 AEKLNEKISRYLIAVKSNNLEEFTRKLDQEIEDLKLESFGLELLYLLARVYKTKANNFIM 243 Query: 429 KSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKV 563 K Y G+ I RD ++KS + S + + + M +V Sbjct: 244 SKKTY-GISKIFTGTRDNARSVKSAYNLLSTGLEAQKAMEKMSEV 287
>YAY1_SCHPO (Q10209) Hypothetical J-domain protein C4H3.01 in chromosome I| Length = 392 Score = 48.1 bits (113), Expect = 2e-05 Identities = 47/222 (21%), Positives = 86/222 (38%), Gaps = 41/222 (18%) Frame = +3 Query: 27 KEAYDKHGKE-GLSQENMVDPAAVFGMLFGSDYFEDYVGQLALASIASVEVDEGLSS--- 194 + YD+ GKE + ++ D F LFG F ++VG+L+ E D + Sbjct: 67 RSQYDQFGKEKAVPEQGFTDAYDFFTNLFGGAPFREWVGELSFVKEMFREEDSAVEQGQM 126 Query: 195 ---------------------QDARAKVQEKIKGLQTEREQKLTQSLKDRLQPYVDG--- 302 D + Q + + +REQ++ + + R++ + Sbjct: 127 NDKQQLLLESSEPTPTIKQQFNDRKKNAQIREREALAKREQEMIEDRRQRIKEVTENLEK 186 Query: 303 RKDDFVHWANAE-------------AKRLSEAAFGEAMLHTVGYIYVRQASRELGKSKLY 443 R DD++ A E A L +FG +LH +G +Y ++ L SK Sbjct: 187 RLDDWIAKATTEEGLNALREKYTQEANTLRIESFGVEILHAIGEVYTQKGRTVLKSSK-- 244 Query: 444 MGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKVEE 569 G+ +++KG ++ S A+ D M+K+E+ Sbjct: 245 FGIGGFWSRMKEKGKIARATWDTVSAAMDAKLSIDQMQKLED 286
>YIS4_YEAST (P40564) Hypothetical 48.6 kDa protein in BET1-PAN1 intergenic| region Length = 432 Score = 47.0 bits (110), Expect = 4e-05 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Frame = +3 Query: 183 GLSSQDARAKVQEKIKGLQTEREQK---LTQSLKDRLQ-----PYVDGRKDDFVHWANAE 338 G ++ + K+++ + + E++++ L+++L +RL Y D KD F E Sbjct: 184 GAEAKKKKTKLEQFEEEQEVEKQKRVDQLSKTLIERLSILTESVYDDACKDSFKKKFEEE 243 Query: 339 AKRLSEAAFGEAMLHTVGYIYVRQASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAAS 518 A L +FG +LHT+G +Y +A L L+ G+ I ++ KG + S Sbjct: 244 ANLLKMESFGLDILHTIGDVYYEKAEIFLASQNLF-GMGGIFHSMKAKGGVFMDTLRTVS 302 Query: 519 GAIALMQLQDGMKKVEEGANKEEQL 593 AI ++K++E + E L Sbjct: 303 AAIDAQNTMKELEKMKEASTNNEPL 327 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Frame = +3 Query: 36 YDKHG-KEGLSQENMVDPAAVFGMLFGSDYFEDYVGQLALASIASVEVDEGLSSQDARAK 212 YDK+G KE + Q D A F ++FG D F Y+G+L L + +++ E L+++D K Sbjct: 67 YDKYGRKEAIPQGGFEDAAEQFSVIFGGDAFASYIGELML--LKNLQKTEELNAEDEAEK 124 Query: 213 VQEKIKGLQ 239 +E ++ ++ Sbjct: 125 EKENVETME 133
>MLP1_YEAST (Q02455) Protein MLP1 (Myosin-like protein 1)| Length = 1875 Score = 33.1 bits (74), Expect = 0.66 Identities = 22/52 (42%), Positives = 29/52 (55%) Frame = +3 Query: 123 FEDYVGQLALASIASVEVDEGLSSQDARAKVQEKIKGLQTEREQKLTQSLKD 278 FE+ V + + S E+D L Q AKVQEK K L+ E +KL + LKD Sbjct: 1555 FEEKVEERIKSMEQSGEIDVVLRKQ-LEAKVQEKQKELENEYNKKLQEELKD 1605
>HEATR_CAEEL (Q23495) Hypothetical protein ZK430.1 in chromosome II| Length = 1650 Score = 33.1 bits (74), Expect = 0.66 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 12/92 (13%) Frame = +3 Query: 126 EDYVGQLALASIASVEVDEGLSSQDARAKVQEKIKGLQTEREQKLTQSLK---------- 275 ED V Q A ++A+ + +E + A +KIK +E+ QKL QS + Sbjct: 454 EDIV-QFASEAVAATQSEESIEIISEEAPSSKKIKLTASEKAQKLAQSSEFAKREVFSGD 512 Query: 276 --DRLQPYVDGRKDDFVHWANAEAKRLSEAAF 365 ++ +++G K D V WA E + E F Sbjct: 513 PINKATEWLNGEKWDKVEWALNEMAQRGEKYF 544
>HCN1_RAT (Q9JKB0) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 1 Length = 910 Score = 32.3 bits (72), Expect = 1.1 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 153 PEQADQHSLQNSRFQKASQRQQRDRPCFPGKGPPFHAYHK 34 P+Q Q Q + Q+ Q+QQ+ +P PG P + HK Sbjct: 751 PQQPQQQQQQQQQQQQQQQQQQQQQPQTPGSSTPKNEVHK 790
>RS2_RHOBA (Q7UKH4) 30S ribosomal protein S2| Length = 260 Score = 31.6 bits (70), Expect = 1.9 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 16/122 (13%) Frame = +3 Query: 279 RLQPYVDGRKDDFVHWANAEA---------KRLSEAAFGEAMLHTVGYIYVRQASRELGK 431 ++ PY+ G+K+ +H + K LS+ A G +++ VG RQA + + Sbjct: 26 KMAPYIFGKKNQ-IHILDIRETLRGLLRAKKYLSQVAAGGSLILFVGT--KRQAGEAVEE 82 Query: 432 SKLYMGVPFIAE-WV---RDKGHTIKSQVHAASGAIALMQ---LQDGMKKVEEGANKEEQ 590 L G+PF++E W+ TI+S++ AL + D KK++ N+E + Sbjct: 83 QSLRCGMPFVSERWLGGTLTNFRTIRSRLGRLEELEALRAGDGINDYSKKMQSSLNREYR 142 Query: 591 LM 596 M Sbjct: 143 KM 144
>TATB_YERPE (Q8ZAM3) Sec-independent protein translocase protein tatB homolog| Length = 220 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +3 Query: 423 LGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKVEEGA--NKEEQLM 596 LG +L + V ++ W+R + + + + L +LQD +KKVE+ N +L Sbjct: 20 LGPERLPVAVRTVSGWIRTLRSLAATVQNELAQELKLQELQDSLKKVEQAGLQNLTPELK 79 Query: 597 KSFEE 611 S +E Sbjct: 80 ASMDE 84
>SYFA_DEIRA (Q9RRX8) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 339 Score = 30.8 bits (68), Expect = 3.3 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 4/96 (4%) Frame = +3 Query: 174 VDEGLSSQDARAKVQEKIKGLQTEREQKLTQSLKDRLQP----YVDGRKDDFVHWANAEA 341 V +G+S D + + E +GL S K R QP +V+ D V+W N Sbjct: 209 VGDGISMSDLKGTIAEMARGLYGA-------SAKARFQPSYYPFVEPGADFAVYWENPRG 261 Query: 342 KRLSEAAFGEAMLHTVGYIYVRQASRELGKSKLYMG 449 + G M+H + V GK ++Y G Sbjct: 262 ESKWLELGGCGMVHPNVFKAVDDLREAAGKDRVYEG 297
>BMP2K_MOUSE (Q91Z96) BMP-2-inducible protein kinase (EC 2.7.11.1) (BIKe)| Length = 1138 Score = 30.4 bits (67), Expect = 4.2 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -1 Query: 204 WRLDCLNLHQPPLKLWMPEQADQHSLQNSRFQKASQRQQR 85 WRL L+LH+ P +Q Q Q + Q+ Q+QQ+ Sbjct: 442 WRLQQLHLHRHPHHHHQQQQQQQQQQQQQQLQQQQQQQQQ 481
>PUR8_HAEIN (P44797) Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)| (ASL) Length = 456 Score = 30.0 bits (66), Expect = 5.6 Identities = 16/73 (21%), Positives = 30/73 (41%) Frame = +3 Query: 387 VGYIYVRQASRELGKSKLYMGVPFIAEWVRDKGHTIKSQVHAASGAIALMQLQDGMKKVE 566 +GY + AS G SKL + P + E + + + + + + +K++ Sbjct: 350 LGYCLIAYASTRKGISKLEVNQPHLLEELNQNWEVLAEPIQTVMRRYGIEKPYEKLKELT 409 Query: 567 EGANKEEQLMKSF 605 G EQ M+ F Sbjct: 410 RGKRVTEQAMREF 422
>GSLG1_CRIGR (Q9Z1E9) Golgi apparatus protein 1 precursor (Golgi| sialoglycoprotein MG-160) (E-selectin ligand 1) (ESL-1) (Latent TGF-beta complexed protein 1) (LTCP-1) Length = 1160 Score = 30.0 bits (66), Expect = 5.6 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = -1 Query: 144 ADQHSLQNSRFQKAS-QRQQRDRPCFPGKGPP 52 A Q LQ S+ QK Q+QQ+ +P FP GPP Sbjct: 45 AGQQLLQLSQQQKQPPQQQQQQQPAFPAGGPP 76
>TBX40_CAEEL (Q9NA55) Putative T-box protein 40| Length = 380 Score = 30.0 bits (66), Expect = 5.6 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = -3 Query: 469 HSAMNGTPIYNLLFPSSLDACRT*IYPTV*SIASPKAASDKRLASAFAQCTKSSF 305 + +N PIY FP+ D + YP +P A D FA K+SF Sbjct: 265 YPTVNTPPIYAQQFPAPFDEKQNQFYPKTDENLAPNCAQDASSLPNFAMNQKASF 319
>APOA1_ANAPL (O42296) Apolipoprotein A-I precursor (Apo-AI) (ApoA-I)| Length = 264 Score = 29.6 bits (65), Expect = 7.2 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 204 RAKVQEKIKGLQTEREQKLTQSLKDRLQPYVDGRKDDFV 320 +AKV E++ L+ E+ L Q K+RL PY + K F+ Sbjct: 216 QAKVVEQLSNLR-EKMTPLVQDFKERLTPYAENLKTRFI 253
>HCN1_MOUSE (O88704) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 1 (Brain cyclic nucleotide gated channel 1) (BCNG-1) (Hyperpolarization-activated cation channel 2) (HAC-2) Length = 910 Score = 29.6 bits (65), Expect = 7.2 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -1 Query: 150 EQADQHSLQNSRFQKASQRQQRDRPCFPGKGPPFHAYHK 34 +Q Q Q + Q+ Q+QQ+ +P PG P + HK Sbjct: 752 QQQQQQQQQQQQQQQQQQQQQQQQPQTPGSSTPKNEVHK 790 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,835,045 Number of Sequences: 219361 Number of extensions: 1774203 Number of successful extensions: 5257 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5251 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
