ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16c17 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467194.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2141 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 486 tttgagattggtcctgtttttcgcgctgaagattcaaatactcacaggcatct 538 |||||| |||| ||||||||| | ||||| ||||||| |||||||||||||| Sbjct: 1106 tttgaggttggacctgtttttagagctgagaattcaaacactcacaggcatct 1158
>ref|XM_507519.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1717_A09.34 mRNA Length = 2163 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 486 tttgagattggtcctgtttttcgcgctgaagattcaaatactcacaggcatct 538 |||||| |||| ||||||||| | ||||| ||||||| |||||||||||||| Sbjct: 1106 tttgaggttggacctgtttttagagctgagaattcaaacactcacaggcatct 1158
>ref|XM_506897.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1717_A09.34 mRNA Length = 2199 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 486 tttgagattggtcctgtttttcgcgctgaagattcaaatactcacaggcatct 538 |||||| |||| ||||||||| | ||||| ||||||| |||||||||||||| Sbjct: 1164 tttgaggttggacctgtttttagagctgagaattcaaacactcacaggcatct 1216
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 486 tttgagattggtcctgtttttcgcgctgaagattcaaatactcacaggcatct 538 |||||| |||| ||||||||| | ||||| ||||||| |||||||||||||| Sbjct: 28134260 tttgaggttggacctgtttttagagctgagaattcaaacactcacaggcatct 28134312
>dbj|AP004071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1717_A09 Length = 203132 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 486 tttgagattggtcctgtttttcgcgctgaagattcaaatactcacaggcatct 538 |||||| |||| ||||||||| | ||||| ||||||| |||||||||||||| Sbjct: 123907 tttgaggttggacctgtttttagagctgagaattcaaacactcacaggcatct 123959
>dbj|AK100516.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100E07, full insert sequence Length = 2600 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 486 tttgagattggtcctgtttttcgcgctgaagattcaaatactcacaggcatct 538 |||||| |||| ||||||||| | ||||| ||||||| |||||||||||||| Sbjct: 1525 tttgaggttggacctgtttttagagctgagaattcaaacactcacaggcatct 1577
>dbj|AK098984.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013093E04, full insert sequence Length = 2140 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 486 tttgagattggtcctgtttttcgcgctgaagattcaaatactcacaggcatct 538 |||||| |||| ||||||||| | ||||| ||||||| |||||||||||||| Sbjct: 1105 tttgaggttggacctgtttttagagctgagaattcaaacactcacaggcatct 1157
>dbj|AK068513.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013154D06, full insert sequence Length = 2160 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 486 tttgagattggtcctgtttttcgcgctgaagattcaaatactcacaggcatct 538 |||||| |||| ||||||||| | ||||| ||||||| |||||||||||||| Sbjct: 1102 tttgaggttggacctgtttttagagctgagaattcaaacactcacaggcatct 1154
>ref|XM_663496.1| Cryptosporidium hominis TU502 aspartate--tRNA ligase (Chro.70181) partial mRNA Length = 1308 Score = 48.1 bits (24), Expect = 0.033 Identities = 45/52 (86%) Strand = Plus / Plus Query: 481 gagtgtttgagattggtcctgtttttcgcgctgaagattcaaatactcacag 532 |||| ||||| |||||||||||||| | || ||| |||||||||||||||| Sbjct: 872 gagtctttgaaattggtcctgttttcagagcagaaaattcaaatactcacag 923 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 427 tggcacagtcaccccaactctataaacaaatg 458 ||||||||||||| |||||| |||| |||||| Sbjct: 818 tggcacagtcacctcaactccataagcaaatg 849
>ref|XM_951658.1| Neurospora crassa OR74A hypothetical protein (NCU01474.1) partial mRNA Length = 1050 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 251 ctcggcgccctgacgagctcctcacc 276 |||||||||||||||||| ||||||| Sbjct: 1043 ctcggcgccctgacgagcacctcacc 1018
>ref|XM_327912.1| Neurospora crassa OR74A hypothetical protein (NCU01474.1) partial mRNA Length = 1050 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 251 ctcggcgccctgacgagctcctcacc 276 |||||||||||||||||| ||||||| Sbjct: 1043 ctcggcgccctgacgagcacctcacc 1018
>emb|BX842620.1| Neurospora crassa DNA linkage group V BAC contig B11E5 Length = 191196 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 251 ctcggcgccctgacgagctcctcacc 276 |||||||||||||||||| ||||||| Sbjct: 46030 ctcggcgccctgacgagcacctcacc 46005
>gb|AC122005.3| Mus musculus chromosome 5 clone RP24-340B11, complete sequence Length = 183264 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 ccctttcttcctccatccatc 46 ||||||||||||||||||||| Sbjct: 11645 ccctttcttcctccatccatc 11625
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 accaacccctcgtcaccgccg 299 ||||||||||||||||||||| Sbjct: 2407128 accaacccctcgtcaccgccg 2407148
>gb|AC126115.5| Rattus norvegicus 4 BAC CH230-213L22 (Children's Hospital Oakland Research Institute) complete sequence Length = 214442 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 24 gaccctttcttcctccatccatctc 48 |||||||||||||||| |||||||| Sbjct: 15968 gaccctttcttcctccttccatctc 15992
>gb|AC134553.5| Mus musculus BAC clone RP24-280H19 from chromosome 12, complete sequence Length = 168895 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 45 tctccctcgccctcctctctgtctc 69 ||||| ||||||||||||||||||| Sbjct: 6231 tctccatcgccctcctctctgtctc 6255
>gb|AC137154.2| Mus musculus BAC clone RP24-572L22 from chromosome 5, complete sequence Length = 173460 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 26 ccctttcttcctccatccatc 46 ||||||||||||||||||||| Sbjct: 102804 ccctttcttcctccatccatc 102784
>gb|AC127142.3| Rattus norvegicus 4 BAC CH230-41K13 (Children's Hospital Oakland Research Institute) complete sequence Length = 238669 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 24 gaccctttcttcctccatccatctc 48 |||||||||||||||| |||||||| Sbjct: 55013 gaccctttcttcctccttccatctc 54989
>emb|CR536604.6| Zebrafish DNA sequence from clone DKEY-57A22 in linkage group 9, complete sequence Length = 217381 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 ctttcttcctccatccatctc 48 ||||||||||||||||||||| Sbjct: 1322 ctttcttcctccatccatctc 1302
>emb|AL645862.14| Mouse DNA sequence from clone RP23-223A11 on chromosome 11, complete sequence Length = 176011 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 45 tctccctcgccctcctctctgtctc 69 |||||||| |||||||||||||||| Sbjct: 144588 tctccctctccctcctctctgtctc 144612
>emb|AL646046.8| Mouse DNA sequence from clone RP23-101M12 on chromosome 11, complete sequence Length = 214665 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 26 ccctttcttcctccatccatc 46 ||||||||||||||||||||| Sbjct: 15868 ccctttcttcctccatccatc 15888
>ref|XM_678510.1| PREDICTED: Danio rerio similar to MGC83743 protein (LOC555866), mRNA Length = 3849 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 ctttcttcctccatccatctc 48 ||||||||||||||||||||| Sbjct: 79 ctttcttcctccatccatctc 59
>dbj|AB197642.1| Uncultured bacterium C23O gene for catechol 2,3-dioxygenase, partial cds, clone: R2-405-81b Length = 405 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 gggcggcgccatccagggagccacc 116 ||||||||||||||||| ||||||| Sbjct: 148 gggcggcgccatccaggcagccacc 172
>dbj|AB197641.1| Uncultured bacterium C23O gene for catechol 2,3-dioxygenase, partial cds, clone: R2-405-81a Length = 405 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 gggcggcgccatccagggagccacc 116 ||||||||||||||||| ||||||| Sbjct: 148 gggcggcgccatccaggcagccacc 172
>dbj|AB195133.1| Uncultured bacterium gene for catechol 2,3-dioxygenase, partial cds, clone: R1-405-82b Length = 405 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 gggcggcgccatccagggagccacc 116 ||||||||||||||||| ||||||| Sbjct: 148 gggcggcgccatccaggcagccacc 172
>dbj|AB195131.1| Uncultured bacterium gene for catechol 2,3-dioxygenase, partial cds, clone: R1-405-79 Length = 405 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 92 gggcggcgccatccagggagccacc 116 ||||||||||||||||| ||||||| Sbjct: 148 gggcggcgccatccaggcagccacc 172
>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold Length = 1888123 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 24 gaccctttcttcctccatccatctc 48 |||||||||||||||| |||||||| Sbjct: 23644 gaccctttcttcctccttccatctc 23668
>gb|AF463766.1| Mus musculus strain C57BL/6J cytokine gene cluster, partial sequence Length = 28254 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 45 tctccctcgccctcctctctgtctc 69 |||||||| |||||||||||||||| Sbjct: 27288 tctccctctccctcctctctgtctc 27312
>emb|BX248325.7| Zebrafish DNA sequence from clone CH211-233I11 in linkage group 9, complete sequence Length = 157207 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 28 ctttcttcctccatccatctc 48 ||||||||||||||||||||| Sbjct: 63168 ctttcttcctccatccatctc 63188
>dbj|AK119608.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-117-F07, full insert sequence Length = 2199 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 486 tttgagattggtcctgtttttcgcgctgaagattcaaatactcacaggcatct 538 |||||| |||| ||||||||| | ||||| ||||| | |||||||||||||| Sbjct: 1164 tttgaggttggacctgtttttagagctgagaattcagacactcacaggcatct 1216
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 69 cgccggccagcggcggctccc 89 ||||||||||||||||||||| Sbjct: 101498 cgccggccagcggcggctccc 101518
>gb|AC146916.3| Rattus norvegicus strain Brown Norway clone CH230-206L9, complete sequence Length = 215015 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 24 gaccctttcttcctccatccatctc 48 |||||||||||||||| |||||||| Sbjct: 23644 gaccctttcttcctccttccatctc 23668
>gb|AC151981.3| Mus musculus BAC clone RP24-66K3 from chromosome 12, complete sequence Length = 185710 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 45 tctccctcgccctcctctctgtctc 69 ||||| ||||||||||||||||||| Sbjct: 75738 tctccatcgccctcctctctgtctc 75714
>gb|AC169677.2| Mus musculus BAC clone RP23-442J18 from chromosome 8, complete sequence Length = 225815 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 27 cctttcttcctccatccatctccctcgccctc 58 |||| |||||||||||| |||||||| ||||| Sbjct: 171465 ccttccttcctccatccttctccctctccctc 171496
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 19 cgttcgaccctttcttcctccatc 42 ||||||||||||||||| |||||| Sbjct: 1846834 cgttcgaccctttcttcttccatc 1846857
>gb|AC117647.12| Mus musculus chromosome 16, clone RP23-244M7, complete sequence Length = 186115 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 aaggtgaactacttcaaagaacac 416 ||||||||||||| |||||||||| Sbjct: 181444 aaggtgaactactccaaagaacac 181421
>gb|AC132416.2| Mus musculus BAC clone RP23-251A5 from chromosome 6, complete sequence Length = 157472 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 ccctttcttcctccatccatctcc 49 |||||||||||||| ||||||||| Sbjct: 93767 ccctttcttcctccttccatctcc 93744
>gb|AC183544.3| Pan troglodytes BAC clone CH251-284N17 from chromosome x, complete sequence Length = 161059 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 atttatgtgtacacatacac 351 |||||||||||||||||||| Sbjct: 142008 atttatgtgtacacatacac 142027
>gb|AC122551.7| Mus musculus chromosome 16, clone RP24-480I8, complete sequence Length = 190760 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 393 aaggtgaactacttcaaagaacac 416 ||||||||||||| |||||||||| Sbjct: 71785 aaggtgaactactccaaagaacac 71762
>gb|AC140437.3| Mus musculus BAC clone RP23-88N2 from chromosome 8, complete sequence Length = 171402 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gatttatgtgtacacataca 350 |||||||||||||||||||| Sbjct: 244 gatttatgtgtacacataca 263
>ref|XM_569891.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNC06340) partial mRNA Length = 873 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 19 cgttcgaccctttcttcctccatc 42 ||||||||||||||||| |||||| Sbjct: 686 cgttcgaccctttcttcttccatc 663
>gb|AC121941.3| Mus musculus BAC clone RP24-209I3 from chromosome 2, complete sequence Length = 165818 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 agggagggtcagctgtcttt 392 |||||||||||||||||||| Sbjct: 75411 agggagggtcagctgtcttt 75392
>gb|AC113969.7| Mus musculus chromosome 8, clone RP23-122L19, complete sequence Length = 182258 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 331 gatttatgtgtacacataca 350 |||||||||||||||||||| Sbjct: 124573 gatttatgtgtacacataca 124592
>gb|AC103975.9| Homo sapiens chromosome 15, clone RP11-1001M11, complete sequence Length = 213676 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 cgccgccacatcacttcccc 197 |||||||||||||||||||| Sbjct: 200073 cgccgccacatcacttcccc 200054
>emb|AL355173.25| Human DNA sequence from clone RP11-335P18 on chromosome 13 Contains the 3' end of the PCDH9 gene for protocadherin 9 and a novel gene, complete sequence Length = 165699 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 26 ccctttcttcctccatccatctcc 49 |||||||||||||| ||||||||| Sbjct: 24641 ccctttcttcctccctccatctcc 24618
>gb|AC130651.2| Homo sapiens chromosome 16 clone CTA-972D3, complete sequence Length = 168190 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tctccctcgccctcctctct 64 |||||||||||||||||||| Sbjct: 65495 tctccctcgccctcctctct 65514
>gb|AC164614.3| Mus musculus BAC clone RP23-337L12 from chromosome 9, complete sequence Length = 215002 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 accctttcttcctccatccatctc 48 ||||||||||||||| |||||||| Sbjct: 136831 accctttcttcctccctccatctc 136854
>gb|AE006466.1| Homo sapiens 16p13.3 sequence section 5 of 8 Length = 265786 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 38 ccatccatctccctcgccctcctctctgtctc 69 |||||| |||||||| ||||||||||| |||| Sbjct: 11708 ccatccctctccctctccctcctctctctctc 11739 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 38 ccatccatctccctcgccctcctctctgtctc 69 |||||| |||||||| ||||||||||| |||| Sbjct: 11528 ccatccctctccctctccctcctctctctctc 11559
>gb|AC161059.4| Mus musculus BAC clone RP23-82L9 from chromosome 6, complete sequence Length = 294389 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ccctttcttcctccatccatctcc 49 |||||||||||||| ||||||||| Sbjct: 60439 ccctttcttcctccttccatctcc 60462
>gb|AY081193.1| Homo sapiens somatostatin receptor subtype 5 gene, exons 1a and 1 and complete cds Length = 10494 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 38 ccatccatctccctcgccctcctctctgtctc 69 |||||| |||||||| ||||||||||| |||| Sbjct: 5203 ccatccctctccctctccctcctctctctctc 5234 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 38 ccatccatctccctcgccctcctctctgtctc 69 |||||| |||||||| ||||||||||| |||| Sbjct: 5023 ccatccctctccctctccctcctctctctctc 5054
>gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, complete sequence Length = 166309 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 cgccgccacatcacttcccc 197 |||||||||||||||||||| Sbjct: 152921 cgccgccacatcacttcccc 152940
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 44 atctccctcgccctcctctc 63 |||||||||||||||||||| Sbjct: 1498742 atctccctcgccctcctctc 1498723
>gb|AC108139.5| Homo sapiens BAC clone RP11-386I19 from 4, complete sequence Length = 61923 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 tcttcctccatccatctccc 50 |||||||||||||||||||| Sbjct: 46396 tcttcctccatccatctccc 46377
>emb|BX537293.9| Zebrafish DNA sequence from clone DKEYP-40D11 in linkage group 5, complete sequence Length = 134768 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 acatacaccaaaaattactg 363 |||||||||||||||||||| Sbjct: 92090 acatacaccaaaaattactg 92109
>dbj|AK076137.1| Mus musculus adult male hippocampus cDNA, RIKEN full-length enriched library, clone:2900016O11 product:proprotein convertase subtilisin/kexin type 1 inhibitor, full insert sequence Length = 1573 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 aacccctcgccacaggcgcc 243 |||||||||||||||||||| Sbjct: 807 aacccctcgccacaggcgcc 826
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 554 tctccatgcagagatgcaaattaa 577 |||||||||| ||||||||||||| Sbjct: 27373201 tctccatgcatagatgcaaattaa 27373178
>gb|AC009041.10| Homo sapiens chromosome 16 clone RP11-161M6, complete sequence Length = 162342 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 38 ccatccatctccctcgccctcctctctgtctc 69 |||||| |||||||| ||||||||||| |||| Sbjct: 146492 ccatccctctccctctccctcctctctctctc 146523
>gb|AC009348.6|AC009348 Drosophila melanogaster, chromosome 3R, region 93A-93B, BAC clone BACR05I01, complete sequence Length = 187151 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 554 tctccatgcagagatgcaaattaa 577 |||||||||||||||||| ||||| Sbjct: 123563 tctccatgcagagatgcatattaa 123586
>gb|AC016489.18| Homo sapiens chromosome 17, clone RP11-329L6, complete sequence Length = 179219 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 accctttcttcctccatccatctc 48 |||||||| ||||||||||||||| Sbjct: 146640 accctttcctcctccatccatctc 146663
>emb|AL929469.10| Zebrafish DNA sequence from clone CH211-149K17 in linkage group 12, complete sequence Length = 146415 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 cctttcttcctccatccatc 46 |||||||||||||||||||| Sbjct: 73840 cctttcttcctccatccatc 73821
>gb|AC129531.8| Homo sapiens chromosome 17, clone RP11-188B1, complete sequence Length = 164068 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 25 accctttcttcctccatccatctc 48 |||||||| ||||||||||||||| Sbjct: 97158 accctttcctcctccatccatctc 97181
>gb|U91323.1|HUU91323 Human Chromosome 16 BAC clone CIT987SK-A-972D3, complete sequence Length = 167880 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tctccctcgccctcctctct 64 |||||||||||||||||||| Sbjct: 102385 tctccctcgccctcctctct 102366
>gb|AE003733.3| Drosophila melanogaster chromosome 3R, section 71 of 118 of the complete sequence Length = 235707 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 554 tctccatgcagagatgcaaattaa 577 |||||||||||||||||| ||||| Sbjct: 47426 tctccatgcagagatgcatattaa 47449
>dbj|AP005434.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-721O19, complete sequence Length = 163308 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 559 atgcagagatgcaaattaaggagc 582 ||||||| |||||||||||||||| Sbjct: 4112 atgcagatatgcaaattaaggagc 4089
>dbj|AP002778.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-643C11, complete sequence Length = 160242 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 559 atgcagagatgcaaattaaggagc 582 ||||||| |||||||||||||||| Sbjct: 113158 atgcagatatgcaaattaaggagc 113135
>emb|AL732467.8| Mouse DNA sequence from clone RP23-147L14 on chromosome 2, complete sequence Length = 229048 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 atttatgtgtacacatacac 351 |||||||||||||||||||| Sbjct: 114703 atttatgtgtacacatacac 114684
>gb|AC115849.13| Mus musculus chromosome 6, clone RP24-249N21, complete sequence Length = 130241 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ccctttcttcctccatccatctcc 49 |||||||||||||| ||||||||| Sbjct: 95314 ccctttcttcctccttccatctcc 95337
>gb|AC171010.3| Gallus gallus BAC clone CH261-161I5 from chromosome ul, complete sequence Length = 245010 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 cctttcttcctccatccatctccc 50 |||||||||| ||||||||||||| Sbjct: 54085 cctttcttcccccatccatctccc 54062
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 554 tctccatgcagagatgcaaattaa 577 |||||||||| ||||||||||||| Sbjct: 27298801 tctccatgcatagatgcaaattaa 27298778
>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124605 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 554 tctccatgcagagatgcaaattaa 577 |||||||||| ||||||||||||| Sbjct: 41521 tctccatgcatagatgcaaattaa 41498
>emb|AL845497.10| Mouse DNA sequence from clone RP23-232K9 on chromosome 2, complete sequence Length = 157619 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 agggagggtcagctgtcttt 392 |||||||||||||||||||| Sbjct: 27117 agggagggtcagctgtcttt 27098
>gb|AC127569.4| Mus musculus BAC clone RP24-216E20 from 9, complete sequence Length = 168588 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 25 accctttcttcctccatccatctc 48 ||||||||||||||| |||||||| Sbjct: 62613 accctttcttcctccctccatctc 62590
>emb|AL645911.14| Mouse DNA sequence from clone RP23-25M3 on chromosome 11, complete sequence Length = 244653 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 gtccctggcacagtcacccc 441 |||||||||||||||||||| Sbjct: 121904 gtccctggcacagtcacccc 121923
>emb|AL031706.17|HS305F3 Human DNA sequence from clone LA16-305F3 on chromosome 16. Contains two putative CpG islands, complete sequence Length = 13012 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 38 ccatccatctccctcgccctcctctctgtctc 69 |||||| |||||||| ||||||||||| |||| Sbjct: 10323 ccatccctctccctctccctcctctctctctc 10354 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 38 ccatccatctccctcgccctcctctctgtctc 69 |||||| |||||||| ||||||||||| |||| Sbjct: 10143 ccatccctctccctctccctcctctctctctc 10174 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,793,477 Number of Sequences: 3902068 Number of extensions: 4793477 Number of successful extensions: 93471 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93173 Number of HSP's gapped (non-prelim): 298 length of query: 586 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 563 effective length of database: 17,143,297,704 effective search space: 9651676607352 effective search space used: 9651676607352 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
