>CO8B_HUMAN (P07358) Complement component C8 beta chain precursor (Complement|
           component 8 beta subunit)
          Length = 591

 Score = 33.1 bits (74), Expect = 0.76
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = -2

Query: 506 CLFPPGSSGHSSMDTDEAGGSRFYAWERD-RFAPYPLMPVDCETSWWSS 363
           CL  PGS G           ++ +A  R  R     LMP+DCE S WSS
Sbjct: 24  CLSLPGSRGERPHSFGSNAVNKSFAKSRQMRSVDVTLMPIDCELSSWSS 72

>RAVR1_HUMAN (Q8IY67) Protein raver-1|
          Length = 606

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 35/140 (25%), Positives = 51/140 (36%), Gaps = 13/140 (9%)
 Frame = -2

Query: 656 PPLVPQFMRA---HGSINEQYPQSSSS----SLFAGAHRSGGMRXXXXXXXXXXPTFCLF 498
           PP  P  +R     G ++  Y  S +S     L AG  +S   +                
Sbjct: 464 PPPAPVGLRGSGLRGPLSHFYSGSPTSYFTSGLQAGLKQSHLSKAIGSSPLGSGEGLLGL 523

Query: 497 PPGSSGHSSMDTDEAGGSRFYAWERDRFAPYPLMPVDCETSWWSSQQSHGASEST----- 333
            PG +GHS +    AGG     WE    AP P  P+    +  S  + H A+ +      
Sbjct: 524 SPGPNGHSHLLKVRAGGGDMQGWE----APAPQRPL-TRPALPSVSRPHWAARNAALPTC 578

Query: 332 -PAPAPRRLFGQWIGLGRSS 276
            P P+P +    W    R+S
Sbjct: 579 CPRPSPAQKAAMWASTPRAS 598

>KCNQ2_RAT (O88943) Potassium voltage-gated channel subfamily KQT member 2|
           (Voltage-gated potassium channel subunit Kv7.2)
           (Potassium channel alpha subunit KvLQT2) (KQT-like 2)
          Length = 852

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 18/101 (17%)
 Frame = -2

Query: 497 PPGSSGHSSMDTDEAGG-------SRFYAWERDRFAPYPLMPVDC--ETSWWSSQQSHGA 345
           PP  S   S D  +  G       S     +R   AP  + P +C   TSW  S Q HG 
Sbjct: 651 PPYHSPEDSRDHADKHGCIIKIVRSTSSTGQRKYAAPPVMPPAECPPSTSWQQSHQRHGT 710

Query: 344 S---------ESTPAPAPRRLFGQWIGLGRSSPENRSPEGS 249
           S            P PA  R    + G  R+S E    EG+
Sbjct: 711 SPVGDHGSLVRIPPPPAHERSLSAYSGGNRASTEFLRLEGT 751

>HXABA_BRARE (Q9DDU0) Homeobox protein Hox-A11a|
          Length = 284

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 383 ETSWWSSQQSHGASESTPAPAPRRLFGQWIGLGRSSPENRSPEGSS 246
           +  + +  + H + +STPAPAP +        G+  PE  SPE SS
Sbjct: 156 DNDYAARDKMHSSKQSTPAPAPEQQ-----PEGKERPETSSPESSS 196

>GON2_SUNMU (O97686) Progonadoliberin-2 precursor (Progonadoliberin II)|
           [Contains: Gonadoliberin-2 (Gonadoliberin II)
           (Luteinizing hormone-releasing hormone II) (LH-RH II)
           (Gonadotropin-releasing hormone II) (GnRH II) (Luliberin
           II); GnRH-associated pepti
          Length = 110

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = -2

Query: 410 PYPLMPVDCETSWWSSQQSHGASESTPAPAPRRLFGQWIGLGRSSP 273
           P PL        W+   +    S   P PAPR   G W+GL   +P
Sbjct: 21  PGPLKAQHWSHGWYPGGKRSPDSPQDPQPAPRFPEGYWLGLAAGNP 66

>HSCB_NEIMA (Q9JTW6) Co-chaperone protein hscB homolog|
          Length = 166

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
 Frame = +1

Query: 64  LFHVSPL-----QNSPEVQRTTRFKFHTDGFFPIFSYKQLRFQMSSFNLGC--------L 204
           LF + P      +N  +  R    +FH D F    +++Q +  M S  +          +
Sbjct: 7   LFRIEPAFDIDTENLEQTYRALAARFHPDKFASASAFEQKQAVMMSSTINDAYRTLKNPI 66

Query: 205 CRGGYIRGECICRYDEPSGDLFSGDDLPRPIHWPKSLLGAGAGVDSDA 348
            R  Y+        D P    F+ + L + + W ++L+ A AG D ++
Sbjct: 67  DRAAYLLKTSGIDADAPEHTSFASEFLMQQMEWRETLMEARAGKDLES 114

>CT085_MOUSE (Q9DA42) Protein C20orf85 homolog|
          Length = 136

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = +1

Query: 22  ETELHKPTKRFPSRLF--HVSPLQNSPEVQRTTRFKFHTDGFFPIFSYKQLRFQMSSFNL 195
           E +  KP    PS  +   VSP+    ++  +      T GF    S K   + +  ++ 
Sbjct: 57  EPQTPKPKPELPSHFYVRPVSPMDKHIKILPSPPVPKTTQGFIGWRSGKPALYCLEKYSE 116

Query: 196 GCLCRGGYIRGEC 234
            C C+G Y R  C
Sbjct: 117 VCSCKGAYARELC 129

>NXF3_HUMAN (Q9H4D5) Nuclear RNA export factor 3 (TAP-like protein 3) (TAPL-3)|
          Length = 531

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = -2

Query: 497 PPGSSGHSSMDTDEAGGSRFYAWERD---RFAPYPLMPVDCETSWWSSQQSHGASESTPA 327
           P     HSS    + G +  +    D   R+ PY + P + + S+    Q+H   E    
Sbjct: 36  PVNPGMHSSSHQQQDGDAAMHGAHMDSPVRYTPYTISPYNRKGSFRKQDQTHVNMEREQK 95

Query: 326 PAPRRLFG 303
           P  RR+ G
Sbjct: 96  PPERRMEG 103


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,627,924
Number of Sequences: 219361
Number of extensions: 2432744
Number of successful extensions: 5725
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5719
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)