Clone Information

BLAST Search Result

Clone Name	rbaal9o13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ251051.1\|AFA251051 Avena fatua mRNA for VIP2 protein (vip2...	410	e-111
2	ref\|NM_185266.1\| Oryza sativa (japonica cultivar-group), predic...	297	2e-77
3	gb\|AC087551.3\| Oryza sativa (japonica cultivar-group) chromosome...	297	2e-77
4	gb\|AC093492.3\| Oryza sativa (japonica cultivar-group) chromosome...	297	2e-77
5	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	297	2e-77
6	dbj\|AK111816.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	297	2e-77
7	gb\|AY108590.1\| Zea mays PCO110089 mRNA sequence	226	7e-56
8	gb\|AY104627.1\| Zea mays PCO126290 mRNA sequence	121	3e-24
9	dbj\|AK104006.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	90	1e-14
10	ref\|NM_184029.1\| Oryza sativa (japonica cultivar-group), predic...	52	0.002
11	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
12	dbj\|AP003764.3\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
13	dbj\|AP003258.3\| Oryza sativa (japonica cultivar-group) genomic D...	52	0.002
14	dbj\|AK058986.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	52	0.002
15	emb\|CR936839.12\| Mouse DNA sequence from clone CH29-120A16 on ch...	46	0.15
16	emb\|AL645744.16\| Mouse DNA sequence from clone RP23-148E7 on chr...	46	0.15
17	emb\|AL645951.20\| Mouse DNA sequence from clone DN-29B18 on chrom...	46	0.15
18	dbj\|AK070217.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	44	0.58
19	gb\|CP000151.1\| Burkholderia sp. 383 chromosome 1, complete sequence	42	2.3
20	gb\|AY377869.1\| Onion grassy shoot phytoplasma isolate 3111 16S r...	42	2.3
21	gb\|AC122298.3\| Mus musculus BAC clone RP23-269A11 from 12, compl...	42	2.3
22	gb\|AC005768.17\|AC005768 Homo sapiens chromosome 4 clone C0315N08...	42	2.3
23	gb\|AE017354.1\| Legionella pneumophila subsp. pneumophila str. Ph...	40	9.1
24	gb\|AC150644.4\| Bos taurus BAC CH240-223I2 (Children's Hospital ...	40	9.1
25	gb\|CP000360.1\| Acidobacteria bacterium Ellin345, complete genome	40	9.1
26	gb\|AC103355.9\| Mus musculus chromosome 14, clone RP24-482C10, co...	40	9.1
27	gb\|AC109213.6\| Mus musculus chromosome 16, clone RP23-345L20, co...	40	9.1
28	gb\|AF533892.1\| Mus musculus p63 (Trp63) gene, alternatively spli...	40	9.1
29	emb\|AL161628.9\| Human DNA sequence from clone RP11-31K16 on chro...	40	9.1
30	emb\|AL096774.9\|HSDJ144C9 Human DNA sequence from clone RP1-144C9...	40	9.1
31	gb\|CP000089.1\| Dechloromonas aromatica RCB, complete genome	40	9.1
32	emb\|AL645606.22\| Mouse DNA sequence from clone RP23-374K2 on chr...	40	9.1
33	ref\|NM_006990.2\| Homo sapiens WAS protein family, member 2 (WASF...	40	9.1
34	dbj\|AK075231.1\| Homo sapiens cDNA FLJ90750 fis, clone PLACE20001...	40	9.1
35	gb\|AC097625.11\| Homo sapiens X BAC RP11-478H11 (Roswell Park Can...	40	9.1
36	gb\|AC026708.6\| Homo sapiens chromosome 5 clone CTD-2078B5, compl...	40	9.1
37	gb\|BC012329.1\| Homo sapiens WAS protein family, member 2, mRNA (...	40	9.1
38	emb\|BX548065.6\| Mouse DNA sequence from clone RP23-163B21 on chr...	40	9.1
39	gb\|AC003669.1\|AC003669 Homo sapiens Xp22 BAC GS-594A7 (Genome Sy...	40	9.1
40	gb\|BC040943.1\| Homo sapiens WAS protein family, member 2, mRNA (...	40	9.1
41	gb\|AC166113.3\| Mus musculus BAC clone RP23-23E6 from chromosome ...	40	9.1
42	dbj\|AP006422.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	40	9.1
43	gb\|AC112493.2\| Homo sapiens X BAC RP11-2M5 (Roswell Park Cancer ...	40	9.1
44	dbj\|AB026542.1\| Homo sapiens WAVE2 mRNA for WASP-family protein,...	40	9.1

>emb|AJ251051.1|AFA251051 Avena fatua mRNA for VIP2 protein (vip2 gene)
          Length = 1724

 Score =  410 bits (207), Expect = e-111
 Identities = 306/339 (90%)
 Strand = Plus / Minus

                                                                        
Query: 325  ggtgcgggtgtggattctgatgcgccatgagactgctgtgagctccaccagcttgtctca 384
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 1385 ggtgccggtgtggattctgatgcgccatgagactgctgtgagctccaccagcttgtctcg 1326

                                                                        
Query: 385  cagtcgactggcatcaatgggtacggcgcgaagcgatcgcgctcccaggcatagaatcgg 444
            ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1325 cagtccactggcattaatgggtatggcgcgaagcgatcgcgctcccaggcatagaatcgg 1266

                                                                        
Query: 445  cttcctccagcctcatcagtatccattgaactatgaccggatgagcccggtgggaacagg 504
             |||||||||| |||||||| |||||||||||||| |||||||| || ||||||||||||
Sbjct: 1265 tttcctccagcgtcatcagtctccattgaactatggccggatgaacctggtgggaacagg 1206

                                                                        
Query: 505  caaaatgttgggttttccggttgaggtggcggaggggcaggtcgcatgcctcctgatcta 564
            |||||||||||||| || |||||||| || || || ||||| ||||||||||| ||||||
Sbjct: 1205 caaaatgttgggttctctggttgaggaggtggcggagcaggccgcatgcctcccgatcta 1146

                                                                        
Query: 565  tgagctccagcgaaaaggctggatgatgaactctgcgggtactgttcgttgatgctacca 624
            || || || ||||||||||| || |||| | ||||| ||||||||||||||| ||| | |
Sbjct: 1145 tgcgccccggcgaaaaggctagaagatggattctgcaggtactgttcgttgaggctgcta 1086

                                                   
Query: 625  tgtgccctcatgaactgaggtaccagaggaggaacatta 663
            ||||||||||| || ||||||||||| ||||||||||||
Sbjct: 1085 tgtgccctcataaattgaggtaccagtggaggaacatta 1047



 Score =  109 bits (55), Expect = 1e-20
 Identities = 79/87 (90%)
 Strand = Plus / Minus

                                                                        
Query: 216  ctacatccgaggagagtgcatttgtcgatacgatgagccctcgggtgatctattctcggg 275
            |||||||||||||||||||||||||||||| |||| ||||||||| ||||| || || ||
Sbjct: 1506 ctacatccgaggagagtgcatttgtcgatatgatgtgccctcgggcgatctgttttcagg 1447

                                       
Query: 276  cgacgacctgccgaggccgatccactg 302
            ||| |||| ||||||||||||||||||
Sbjct: 1446 cgatgaccggccgaggccgatccactg 1420



 Score =  107 bits (54), Expect = 5e-20
 Identities = 134/153 (87%), Gaps = 7/153 (4%)
 Strand = Plus / Minus

                                                                        
Query: 57   ctccaggttatttcatgtttctccct-tgcagaattctccggaag-ttcagcgcacaacc 114
            |||||||||||||||||||||||||| ||||||||||||| || | |||| ||| |||||
Sbjct: 1654 ctccaggttatttcatgtttctccctctgcagaattctccagatgtttcaccgcgcaacc 1595

                                                                        
Query: 115  cggtttaaattccatacagatggttttttccccatcttttcttacaagcaactcaggttc 174
            |||||| |||| ||||||||  | ||||  |||||| |||||||||||||||||||||||
Sbjct: 1594 cggttt-aattgcatacagacaggtttt--cccatcatttcttacaagcaactcaggttc 1538

                                             
Query: 175  -caaatgt-caagttttaacttaggttgcctct 205
              |||| |  |||||||||||||||||||||||
Sbjct: 1537 tgaaatatgaaagttttaacttaggttgcctct 1505

to top

>ref|NM_185266.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1320

 Score =  297 bits (150), Expect = 2e-77
 Identities = 362/433 (83%), Gaps = 6/433 (1%)
 Strand = Plus / Minus

                                                                        
Query: 231  gtgcatttgtcgatacgatgagccctcgggtgatctattctcgggcgacgacctgccgag 290
            ||||||||| ||||||||||||||||||||||||| ||| || || || || || || | 
Sbjct: 1305 gtgcatttgccgatacgatgagccctcgggtgatcgattttccggagatgatcttccaac 1246

                                                                        
Query: 291  gccgatccactggccaaagagtctcctcggcgcaggtgcgggtgtggattctgatgcgcc 350
             || ||||| || ||||| |||||||| || ||||| ||||||      |||||||  ||
Sbjct: 1245 accaatccattgcccaaatagtctccttggagcaggcgcgggt------tctgatgtacc 1192

                                                                        
Query: 351  atgagactgctgtgagctccaccagcttgtctcacagtcgactggcatcaatgggtacgg 410
            |||||| || ||||| ||||||||| ||||||||||||| |||||||| | |||||| ||
Sbjct: 1191 atgagattgttgtgaactccaccagtttgtctcacagtccactggcattagtgggtatgg 1132

                                                                        
Query: 411  cgcgaagcgatcgcgctcccaggcatagaatcggcttcctccagcctcatcagtatccat 470
             ||||||||||| || |||||||||||||||||| ||||||| || |||||||| |||||
Sbjct: 1131 tgcgaagcgatcccgttcccaggcatagaatcggtttcctcctgcatcatcagtctccat 1072

                                                                        
Query: 471  tgaactatgaccggatgagcccggtgggaacaggcaaaatgttgggttttccggttgagg 530
             ||  |||| || ||||| || |||||||| ||||||||||  ||||| || ||| ||||
Sbjct: 1071 cgagttatggccagatgaacctggtgggaaaaggcaaaatgccgggttctctggtagagg 1012

                                                                        
Query: 531  tggcggaggggcaggtcgcatgcctcctgatctatgagctccagcgaaaaggctggatga 590
             ||||| || |||| |||||||||||||||||||||||| ||||| || | |||||||||
Sbjct: 1011 gggcggcggtgcagttcgcatgcctcctgatctatgagccccagcaaataagctggatga 952

                                                                        
Query: 591  tgaactctgcgggtactgttcgttgatgctaccatgtgccctcatgaactgaggtaccag 650
            |||||||||| ||||||||||  | ||||| || || ||||||||||| |||||||||| 
Sbjct: 951  tgaactctgctggtactgttcactaatgctgccgtgcgccctcatgaattgaggtaccat 892

                         
Query: 651  aggaggaacatta 663
            |||||||||||||
Sbjct: 891  aggaggaacatta 879

to top

>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05,
            complete sequence
          Length = 145044

 Score =  297 bits (150), Expect = 2e-77
 Identities = 362/433 (83%), Gaps = 6/433 (1%)
 Strand = Plus / Plus

                                                                        
Query: 231  gtgcatttgtcgatacgatgagccctcgggtgatctattctcgggcgacgacctgccgag 290
            ||||||||| ||||||||||||||||||||||||| ||| || || || || || || | 
Sbjct: 7411 gtgcatttgccgatacgatgagccctcgggtgatcgattttccggagatgatcttccaac 7470

                                                                        
Query: 291  gccgatccactggccaaagagtctcctcggcgcaggtgcgggtgtggattctgatgcgcc 350
             || ||||| || ||||| |||||||| || ||||| ||||||      |||||||  ||
Sbjct: 7471 accaatccattgcccaaatagtctccttggagcaggcgcgggt------tctgatgtacc 7524

                                                                        
Query: 351  atgagactgctgtgagctccaccagcttgtctcacagtcgactggcatcaatgggtacgg 410
            |||||| || ||||| ||||||||| ||||||||||||| |||||||| | |||||| ||
Sbjct: 7525 atgagattgttgtgaactccaccagtttgtctcacagtccactggcattagtgggtatgg 7584

                                                                        
Query: 411  cgcgaagcgatcgcgctcccaggcatagaatcggcttcctccagcctcatcagtatccat 470
             ||||||||||| || |||||||||||||||||| ||||||| || |||||||| |||||
Sbjct: 7585 tgcgaagcgatcccgttcccaggcatagaatcggtttcctcctgcatcatcagtctccat 7644

                                                                        
Query: 471  tgaactatgaccggatgagcccggtgggaacaggcaaaatgttgggttttccggttgagg 530
             ||  |||| || ||||| || |||||||| ||||||||||  ||||| || ||| ||||
Sbjct: 7645 cgagttatggccagatgaacctggtgggaaaaggcaaaatgccgggttctctggtagagg 7704

                                                                        
Query: 531  tggcggaggggcaggtcgcatgcctcctgatctatgagctccagcgaaaaggctggatga 590
             ||||| || |||| |||||||||||||||||||||||| ||||| || | |||||||||
Sbjct: 7705 gggcggcggtgcagttcgcatgcctcctgatctatgagccccagcaaataagctggatga 7764

                                                                        
Query: 591  tgaactctgcgggtactgttcgttgatgctaccatgtgccctcatgaactgaggtaccag 650
            |||||||||| ||||||||||  | ||||| || || ||||||||||| |||||||||| 
Sbjct: 7765 tgaactctgctggtactgttcactaatgctgccgtgcgccctcatgaattgaggtaccat 7824

                         
Query: 651  aggaggaacatta 663
            |||||||||||||
Sbjct: 7825 aggaggaacatta 7837

to top

>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01,
              complete sequence
          Length = 141661

 Score =  297 bits (150), Expect = 2e-77
 Identities = 362/433 (83%), Gaps = 6/433 (1%)
 Strand = Plus / Plus

                                                                          
Query: 231    gtgcatttgtcgatacgatgagccctcgggtgatctattctcgggcgacgacctgccgag 290
              ||||||||| ||||||||||||||||||||||||| ||| || || || || || || | 
Sbjct: 116938 gtgcatttgccgatacgatgagccctcgggtgatcgattttccggagatgatcttccaac 116997

                                                                          
Query: 291    gccgatccactggccaaagagtctcctcggcgcaggtgcgggtgtggattctgatgcgcc 350
               || ||||| || ||||| |||||||| || ||||| ||||||      |||||||  ||
Sbjct: 116998 accaatccattgcccaaatagtctccttggagcaggcgcgggt------tctgatgtacc 117051

                                                                          
Query: 351    atgagactgctgtgagctccaccagcttgtctcacagtcgactggcatcaatgggtacgg 410
              |||||| || ||||| ||||||||| ||||||||||||| |||||||| | |||||| ||
Sbjct: 117052 atgagattgttgtgaactccaccagtttgtctcacagtccactggcattagtgggtatgg 117111

                                                                          
Query: 411    cgcgaagcgatcgcgctcccaggcatagaatcggcttcctccagcctcatcagtatccat 470
               ||||||||||| || |||||||||||||||||| ||||||| || |||||||| |||||
Sbjct: 117112 tgcgaagcgatcccgttcccaggcatagaatcggtttcctcctgcatcatcagtctccat 117171

                                                                          
Query: 471    tgaactatgaccggatgagcccggtgggaacaggcaaaatgttgggttttccggttgagg 530
               ||  |||| || ||||| || |||||||| ||||||||||  ||||| || ||| ||||
Sbjct: 117172 cgagttatggccagatgaacctggtgggaaaaggcaaaatgccgggttctctggtagagg 117231

                                                                          
Query: 531    tggcggaggggcaggtcgcatgcctcctgatctatgagctccagcgaaaaggctggatga 590
               ||||| || |||| |||||||||||||||||||||||| ||||| || | |||||||||
Sbjct: 117232 gggcggcggtgcagttcgcatgcctcctgatctatgagccccagcaaataagctggatga 117291

                                                                          
Query: 591    tgaactctgcgggtactgttcgttgatgctaccatgtgccctcatgaactgaggtaccag 650
              |||||||||| ||||||||||  | ||||| || || ||||||||||| |||||||||| 
Sbjct: 117292 tgaactctgctggtactgttcactaatgctgccgtgcgccctcatgaattgaggtaccat 117351

                           
Query: 651    aggaggaacatta 663
              |||||||||||||
Sbjct: 117352 aggaggaacatta 117364

to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  297 bits (150), Expect = 2e-77
 Identities = 362/433 (83%), Gaps = 6/433 (1%)
 Strand = Plus / Plus

                                                                           
Query: 231     gtgcatttgtcgatacgatgagccctcgggtgatctattctcgggcgacgacctgccgag 290
               ||||||||| ||||||||||||||||||||||||| ||| || || || || || || | 
Sbjct: 3129694 gtgcatttgccgatacgatgagccctcgggtgatcgattttccggagatgatcttccaac 3129753

                                                                           
Query: 291     gccgatccactggccaaagagtctcctcggcgcaggtgcgggtgtggattctgatgcgcc 350
                || ||||| || ||||| |||||||| || ||||| ||||||      |||||||  ||
Sbjct: 3129754 accaatccattgcccaaatagtctccttggagcaggcgcgggt------tctgatgtacc 3129807

                                                                           
Query: 351     atgagactgctgtgagctccaccagcttgtctcacagtcgactggcatcaatgggtacgg 410
               |||||| || ||||| ||||||||| ||||||||||||| |||||||| | |||||| ||
Sbjct: 3129808 atgagattgttgtgaactccaccagtttgtctcacagtccactggcattagtgggtatgg 3129867

                                                                           
Query: 411     cgcgaagcgatcgcgctcccaggcatagaatcggcttcctccagcctcatcagtatccat 470
                ||||||||||| || |||||||||||||||||| ||||||| || |||||||| |||||
Sbjct: 3129868 tgcgaagcgatcccgttcccaggcatagaatcggtttcctcctgcatcatcagtctccat 3129927

                                                                           
Query: 471     tgaactatgaccggatgagcccggtgggaacaggcaaaatgttgggttttccggttgagg 530
                ||  |||| || ||||| || |||||||| ||||||||||  ||||| || ||| ||||
Sbjct: 3129928 cgagttatggccagatgaacctggtgggaaaaggcaaaatgccgggttctctggtagagg 3129987

                                                                           
Query: 531     tggcggaggggcaggtcgcatgcctcctgatctatgagctccagcgaaaaggctggatga 590
                ||||| || |||| |||||||||||||||||||||||| ||||| || | |||||||||
Sbjct: 3129988 gggcggcggtgcagttcgcatgcctcctgatctatgagccccagcaaataagctggatga 3130047

                                                                           
Query: 591     tgaactctgcgggtactgttcgttgatgctaccatgtgccctcatgaactgaggtaccag 650
               |||||||||| ||||||||||  | ||||| || || ||||||||||| |||||||||| 
Sbjct: 3130048 tgaactctgctggtactgttcactaatgctgccgtgcgccctcatgaattgaggtaccat 3130107

                            
Query: 651     aggaggaacatta 663
               |||||||||||||
Sbjct: 3130108 aggaggaacatta 3130120

to top

>dbj|AK111816.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147K05, full
            insert sequence
          Length = 1537

 Score =  297 bits (150), Expect = 2e-77
 Identities = 362/433 (83%), Gaps = 6/433 (1%)
 Strand = Plus / Minus

                                                                        
Query: 231  gtgcatttgtcgatacgatgagccctcgggtgatctattctcgggcgacgacctgccgag 290
            ||||||||| ||||||||||||||||||||||||| ||| || || || || || || | 
Sbjct: 1297 gtgcatttgccgatacgatgagccctcgggtgatcgattttccggagatgatcttccaac 1238

                                                                        
Query: 291  gccgatccactggccaaagagtctcctcggcgcaggtgcgggtgtggattctgatgcgcc 350
             || ||||| || ||||| |||||||| || ||||| ||||||      |||||||  ||
Sbjct: 1237 accaatccattgcccaaatagtctccttggagcaggcgcgggt------tctgatgtacc 1184

                                                                        
Query: 351  atgagactgctgtgagctccaccagcttgtctcacagtcgactggcatcaatgggtacgg 410
            |||||| || ||||| ||||||||| ||||||||||||| |||||||| | |||||| ||
Sbjct: 1183 atgagattgttgtgaactccaccagtttgtctcacagtccactggcattagtgggtatgg 1124

                                                                        
Query: 411  cgcgaagcgatcgcgctcccaggcatagaatcggcttcctccagcctcatcagtatccat 470
             ||||||||||| || |||||||||||||||||| ||||||| || |||||||| |||||
Sbjct: 1123 tgcgaagcgatcccgttcccaggcatagaatcggtttcctcctgcatcatcagtctccat 1064

                                                                        
Query: 471  tgaactatgaccggatgagcccggtgggaacaggcaaaatgttgggttttccggttgagg 530
             ||  |||| || ||||| || |||||||| ||||||||||  ||||| || ||| ||||
Sbjct: 1063 cgagttatggccagatgaacctggtgggaaaaggcaaaatgccgggttctctggtagagg 1004

                                                                        
Query: 531  tggcggaggggcaggtcgcatgcctcctgatctatgagctccagcgaaaaggctggatga 590
             ||||| || |||| |||||||||||||||||||||||| ||||| || | |||||||||
Sbjct: 1003 gggcggcggtgcagttcgcatgcctcctgatctatgagccccagcaaataagctggatga 944

                                                                        
Query: 591  tgaactctgcgggtactgttcgttgatgctaccatgtgccctcatgaactgaggtaccag 650
            |||||||||| ||||||||||  | ||||| || || ||||||||||| |||||||||| 
Sbjct: 943  tgaactctgctggtactgttcactaatgctgccgtgcgccctcatgaattgaggtaccat 884

                         
Query: 651  aggaggaacatta 663
            |||||||||||||
Sbjct: 883  aggaggaacatta 871

to top

>gb|AY108590.1| Zea mays PCO110089 mRNA sequence
          Length = 1070

 Score =  226 bits (114), Expect = 7e-56
 Identities = 257/304 (84%), Gaps = 3/304 (0%)
 Strand = Plus / Minus

                                                                       
Query: 357 ctgctgtgagctccaccagcttgtctcacagtcgactggcatcaatgggtacggcgcgaa 416
           |||||||||| ||||||||||| |||| ||||| || |||||||| ||  | || |||||
Sbjct: 377 ctgctgtgaggtccaccagcttatctcgcagtccacaggcatcaacggaaatggggcgaa 318

                                                                       
Query: 417 gcgatcgcgctcccaggcatagaatcggcttcctccagcctcatcagtatccattgaact 476
            || || |||||||||||||||||  ||||||||||||| |||||||| ||||| |||||
Sbjct: 317 ccggtcacgctcccaggcatagaactggcttcctccagcgtcatcagtctccatcgaact 258

                                                                       
Query: 477 atgaccggatgagcccggtgggaacaggcaaaatgttgggttttccggttgaggtggcgg 536
           ||| |||||||| ||||||||||||| | |||| || ||||| || ||| |||||| |  
Sbjct: 257 atggccggatgaacccggtgggaacaaggaaaaggtggggttctctggtagaggtgtc-- 200

                                                                       
Query: 537 aggggcaggtcgcatgcctcctgatctatgagctccagcgaaaaggctggatgatgaact 596
            || |||||||||||||||||||| ||||| || ||||| || ||||| ||||||||| |
Sbjct: 199 -ggcgcaggtcgcatgcctcctgacctatgtgccccagcaaataggctagatgatgaatt 141

                                                                       
Query: 597 ctgcgggtactgttcgttgatgctaccatgtgccctcatgaactgaggtaccagaggagg 656
           |||  |||| ||||| |||||||| ||||| ||||||||||||||||| | |||||||||
Sbjct: 140 ctgttggtattgttcattgatgctgccatgggccctcatgaactgaggcatcagaggagg 81

               
Query: 657 aaca 660
           ||||
Sbjct: 80  aaca 77



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 70/80 (87%)
 Strand = Plus / Minus

                                                                       
Query: 216 ctacatccgaggagagtgcatttgtcgatacgatgagccctcgggtgatctattctcggg 275
           ||||||||| || ||||||||||| |||||||| ||||||||||| ||||| ||||| ||
Sbjct: 677 ctacatccgtggcgagtgcatttgccgatacgaagagccctcgggcgatctgttctcagg 618

                               
Query: 276 cgacgacctgccgaggccga 295
            |||||||||| || |||||
Sbjct: 617 ggacgacctgctgacgccga 598



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 234 catttgtcgatacgatgagccctcgggtgatctattctcgggcgacgacctgccgaggcc 293
           |||||| |||||||| ||||||||||||| |||||| || || ||||||||||||| |||
Sbjct: 497 catttgccgatacgaagagccctcgggtggtctattttcaggggacgacctgccgacgcc 438

             
Query: 294 ga 295
           ||
Sbjct: 437 ga 436



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 145 cccatcttttcttacaagcaactcaggttccaaat 179
           |||||| ||||||||||||| ||| ||||||||||
Sbjct: 738 cccatcgtttcttacaagcatctcgggttccaaat 704



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 358 tgctgtgagctccaccagcttgtctcacagtcgactggcatca 400
           |||||||||  ||||||||||||||| ||||| || |||||||
Sbjct: 538 tgctgtgaggaccaccagcttgtctcgcagtccacaggcatca 496



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 37/41 (90%), Gaps = 1/41 (2%)
 Strand = Plus / Minus

                                                    
Query: 4   ttgattttaaatatgtacgagacggaatt-acataaaccaa 43
           ||||||| ||||||||||||||  ||||| |||||||||||
Sbjct: 881 ttgatttcaaatatgtacgagatagaattcacataaaccaa 841

to top

>gb|AY104627.1| Zea mays PCO126290 mRNA sequence
          Length = 1295

 Score =  121 bits (61), Expect = 3e-24
 Identities = 109/125 (87%)
 Strand = Plus / Minus

                                                                        
Query: 538  ggggcaggtcgcatgcctcctgatctatgagctccagcgaaaaggctggatgatgaactc 597
            ||||||||||||||||||||||| |||||  | ||||| || | ||| ||||||||| ||
Sbjct: 1262 ggggcaggtcgcatgcctcctgacctatggcccccagcaaataagctagatgatgaattc 1203

                                                                        
Query: 598  tgcgggtactgttcgttgatgctaccatgtgccctcatgaactgaggtaccagaggagga 657
            ||  ||||||||||| ||||||| ||||| ||||||||||||||||| | ||||||||||
Sbjct: 1202 tgttggtactgttcgctgatgctgccatgagccctcatgaactgaggcatcagaggagga 1143

                 
Query: 658  acatt 662
            |||||
Sbjct: 1142 acatt 1138

to top

>dbj|AK104006.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F10, full
           insert sequence
          Length = 458

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 137/168 (81%), Gaps = 6/168 (3%)
 Strand = Plus / Minus

                                                                       
Query: 231 gtgcatttgtcgatacgatgagccctcgggtgatctattctcgggcgacgacctgccgag 290
           ||||||||| ||||||||||||||||||||||||| ||| || || || || || || | 
Sbjct: 163 gtgcatttgccgatacgatgagccctcgggtgatcgattttccggagatgatcttccaac 104

                                                                       
Query: 291 gccgatccactggccaaagagtctcctcggcgcaggtgcgggtgtggattctgatgcgcc 350
            || ||||| || ||||| |||||||| || ||||| ||||||      |||||||  ||
Sbjct: 103 accaatccattgcccaaatagtctccttggagcaggcgcgggt------tctgatgtacc 50

                                                           
Query: 351 atgagactgctgtgagctccaccagcttgtctcacagtcgactggcat 398
           |||||| || ||||| ||||||||| ||||||||||||| ||||||||
Sbjct: 49  atgagattgttgtgaactccaccagtttgtctcacagtccactggcat 2

to top

>ref|NM_184029.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1317

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 607 tgttcgttgatgctaccatgtgccctcatgaactgaggtaccagaggaggaaca 660
           |||||||||||| ||||||| | ||||||||| || ||| ||| ||||||||||
Sbjct: 938 tgttcgttgatgttaccatgcggcctcatgaattgtggtgccataggaggaaca 885

to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                      
Query: 607      tgttcgttgatgctaccatgtgccctcatgaactgaggtaccagaggaggaaca 660
                |||||||||||| ||||||| | ||||||||| || ||| ||| ||||||||||
Sbjct: 14001649 tgttcgttgatgttaccatgcggcctcatgaattgtggtgccataggaggaaca 14001596

to top

>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1051E10
          Length = 207782

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                    
Query: 607    tgttcgttgatgctaccatgtgccctcatgaactgaggtaccagaggaggaaca 660
              |||||||||||| ||||||| | ||||||||| || ||| ||| ||||||||||
Sbjct: 161951 tgttcgttgatgttaccatgcggcctcatgaattgtggtgccataggaggaaca 161898

to top

>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0463A02
          Length = 151041

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 607   tgttcgttgatgctaccatgtgccctcatgaactgaggtaccagaggaggaaca 660
             |||||||||||| ||||||| | ||||||||| || ||| ||| ||||||||||
Sbjct: 77394 tgttcgttgatgttaccatgcggcctcatgaattgtggtgccataggaggaaca 77341

to top

>dbj|AK058986.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E07, full
           insert sequence
          Length = 1315

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                 
Query: 607 tgttcgttgatgctaccatgtgccctcatgaactgaggtaccagaggaggaaca 660
           |||||||||||| ||||||| | ||||||||| || ||| ||| ||||||||||
Sbjct: 649 tgttcgttgatgttaccatgcggcctcatgaattgtggtgccataggaggaaca 596

to top

>emb|CR936839.12| Mouse DNA sequence from clone CH29-120A16 on chromosome 1, complete
             sequence
          Length = 250586

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 138   ttttttccccatcttttcttaca 160
             |||||||||||||||||||||||
Sbjct: 73156 ttttttccccatcttttcttaca 73178

to top

>emb|AL645744.16| Mouse DNA sequence from clone RP23-148E7 on chromosome 1 Contains the
             Icos gene for inducible T-cell co-stimulator, complete
             sequence
          Length = 108015

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 138   ttttttccccatcttttcttaca 160
             |||||||||||||||||||||||
Sbjct: 81466 ttttttccccatcttttcttaca 81444

to top

>emb|AL645951.20| Mouse DNA sequence from clone DN-29B18 on chromosome 1 Contains a
             ribosomal protein L17 (RPL17) pseudogene and a tigger
             transposable element derived 1 (TIGD1) pseudogene,
             complete sequence
          Length = 129519

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 138   ttttttccccatcttttcttaca 160
             |||||||||||||||||||||||
Sbjct: 34660 ttttttccccatcttttcttaca 34638

to top

>dbj|AK070217.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044E12, full
            insert sequence
          Length = 2298

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                  
Query: 607  tgttcgttgatgctaccatgtgccctcatgaactgaggtaccagaggaggaaca 660
            |||||||||||| ||||||| | ||||||||| || ||| ||| ||||| ||||
Sbjct: 1632 tgttcgttgatgttaccatgcggcctcatgaattgtggtgccataggagaaaca 1579

to top

>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 285     gccgaggccgatccactggccaaag 309
               |||||||||||||| ||||||||||
Sbjct: 1024135 gccgaggccgatcccctggccaaag 1024159

to top

>gb|AY377869.1| Onion grassy shoot phytoplasma isolate 3111 16S ribosomal RNA gene,
           partial sequence
          Length = 1115

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 134 atggttttttccccatcttttctt 157
           ||||||||| ||||||||||||||
Sbjct: 279 atggtttttnccccatcttttctt 256

to top

>gb|AC122298.3| Mus musculus BAC clone RP23-269A11 from 12, complete sequence
          Length = 151332

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 137   gttttttccccatcttttctt 157
             |||||||||||||||||||||
Sbjct: 28194 gttttttccccatcttttctt 28214

to top

>gb|AC005768.17|AC005768 Homo sapiens chromosome 4 clone C0315N08, complete sequence
          Length = 190544

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 137    gttttttccccatcttttctt 157
              |||||||||||||||||||||
Sbjct: 157073 gttttttccccatcttttctt 157093

to top

>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 506     aaaatgttgggttttccggttgag 529
               |||||| |||||||||||||||||
Sbjct: 1817454 aaaatgctgggttttccggttgag 1817431

to top

>gb|AC150644.4| Bos taurus  BAC CH240-223I2 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 199501

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   gttttttccccatcttttct 156
             ||||||||||||||||||||
Sbjct: 67703 gttttttccccatcttttct 67684

to top

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 409     ggcgcgaagcgatcgcgctc 428
               ||||||||||||||||||||
Sbjct: 3772023 ggcgcgaagcgatcgcgctc 3772004

to top

>gb|AC103355.9| Mus musculus chromosome 14, clone RP24-482C10, complete sequence
          Length = 192348

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 362   gtgagctccaccagcttgtc 381
             ||||||||||||||||||||
Sbjct: 17019 gtgagctccaccagcttgtc 17000

to top

>gb|AC109213.6| Mus musculus chromosome 16, clone RP23-345L20, complete sequence
          Length = 244558

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 503   ggcaaaatgttgggttttcc 522
             ||||||||||||||||||||
Sbjct: 74746 ggcaaaatgttgggttttcc 74765

to top

>gb|AF533892.1| Mus musculus p63 (Trp63) gene, alternatively spliced, complete cds
          Length = 208158

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 503    ggcaaaatgttgggttttcc 522
              ||||||||||||||||||||
Sbjct: 202198 ggcaaaatgttgggttttcc 202217

to top

>emb|AL161628.9| Human DNA sequence from clone RP11-31K16 on chromosome 9 Contains a
             pseudogene similar to part of nucleolar protein 5A (56kDa
             with KKE/D repeat) (NOL5A) (NOP56), the ELAVL2 gene for
             ELAV (embryonic lethal, abnormal vision, Drosophila)-like
             2 (Hu antigen B) (HUB, HELN1), two novel genes, the 5' end
             of a novel gene and a CpG island, complete sequence
          Length = 183483

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 576   gaaaaggctggatgatgaac 595
             ||||||||||||||||||||
Sbjct: 79276 gaaaaggctggatgatgaac 79295

to top

>emb|AL096774.9|HSDJ144C9 Human DNA sequence from clone RP1-144C9 on chromosome 1p34.3-36.11
             Contains the gene for a novel protein, a ribosomal protein
             S24 (RPS24) pseudogene, the GPR3 gene for G
             protein-coupled receptor 3 and the 3' end of the WASF2
             gene for WAS protein family, member 2, complete sequence
          Length = 77322

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 527   gaggtggcggaggggcaggt 546
             ||||||||||||||||||||
Sbjct: 33814 gaggtggcggaggggcaggt 33833

to top

>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome
          Length = 4501104

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 513     tgggttttccggttgaggtg 532
               ||||||||||||||||||||
Sbjct: 2769991 tgggttttccggttgaggtg 2770010

to top

>emb|AL645606.22| Mouse DNA sequence from clone RP23-374K2 on chromosome 1, complete
             sequence
          Length = 193458

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ttgcctctgcagagggggct 217
             ||||||||||||||||||||
Sbjct: 81437 ttgcctctgcagagggggct 81418

to top

>ref|NM_006990.2| Homo sapiens WAS protein family, member 2 (WASF2), mRNA
          Length = 4270

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 527  gaggtggcggaggggcaggt 546
            ||||||||||||||||||||
Sbjct: 1192 gaggtggcggaggggcaggt 1173

to top

>dbj|AK075231.1| Homo sapiens cDNA FLJ90750 fis, clone PLACE2000118, weakly similar
           to WISKOTT-ALDRICH SYNDROME PROTEIN HOMOLOG
          Length = 3417

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 527 gaggtggcggaggggcaggt 546
           ||||||||||||||||||||
Sbjct: 342 gaggtggcggaggggcaggt 323

to top

>gb|AC097625.11| Homo sapiens X BAC RP11-478H11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 194492

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ttttttccccatcttttctt 157
             ||||||||||||||||||||
Sbjct: 83595 ttttttccccatcttttctt 83614

to top

>gb|AC026708.6| Homo sapiens chromosome 5 clone CTD-2078B5, complete sequence
          Length = 142047

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   tgaggtggcggaggggcagg 545
             ||||||||||||||||||||
Sbjct: 73056 tgaggtggcggaggggcagg 73075

to top

>gb|BC012329.1| Homo sapiens WAS protein family, member 2, mRNA (cDNA clone
            IMAGE:4555042)
          Length = 1504

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 527  gaggtggcggaggggcaggt 546
            ||||||||||||||||||||
Sbjct: 1192 gaggtggcggaggggcaggt 1173

to top

>emb|BX548065.6| Mouse DNA sequence from clone RP23-163B21 on chromosome X, complete
             sequence
          Length = 225082

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   acttaggttgcctctgcaga 210
             ||||||||||||||||||||
Sbjct: 53481 acttaggttgcctctgcaga 53500

to top

>gb|AC003669.1|AC003669 Homo sapiens Xp22 BAC GS-594A7 (Genome Systems Human BAC library)
            contains Bmx gene, complete sequence
          Length = 159446

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 138  ttttttccccatcttttctt 157
            ||||||||||||||||||||
Sbjct: 2160 ttttttccccatcttttctt 2179

to top

>gb|BC040943.1| Homo sapiens WAS protein family, member 2, mRNA (cDNA clone MGC:48747
            IMAGE:4385298), complete cds
          Length = 2129

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 527  gaggtggcggaggggcaggt 546
            ||||||||||||||||||||
Sbjct: 1183 gaggtggcggaggggcaggt 1164

to top

>gb|AC166113.3| Mus musculus BAC clone RP23-23E6 from chromosome 14, complete sequence
          Length = 252394

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    gtgagctccaccagcttgtc 381
              ||||||||||||||||||||
Sbjct: 163882 gtgagctccaccagcttgtc 163863

to top

>dbj|AP006422.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT33E11, TM0310b,
             complete sequence
          Length = 93261

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 53    ttccctccaggttatttcat 72
             ||||||||||||||||||||
Sbjct: 37123 ttccctccaggttatttcat 37142

to top

>gb|AC112493.2| Homo sapiens X BAC RP11-2M5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164480

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 146   ccatcttttcttacaagcaa 165
             ||||||||||||||||||||
Sbjct: 58982 ccatcttttcttacaagcaa 58963

to top

>dbj|AB026542.1| Homo sapiens WAVE2 mRNA for WASP-family protein, complete cds
          Length = 1497

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 527 gaggtggcggaggggcaggt 546
           ||||||||||||||||||||
Sbjct: 976 gaggtggcggaggggcaggt 957


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,516,024
Number of Sequences: 3902068
Number of extensions: 5516024
Number of successful extensions: 126019
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125729
Number of HSP's gapped (non-prelim): 287
length of query: 663
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 640
effective length of database: 17,143,297,704
effective search space: 10971710530560
effective search space used: 10971710530560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result