ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags15n08 |
|---|---|
| Clone Library Name | barley_pub |
>YMY0_YEAST (Q04304) Hypothetical 24.9 kDa protein in RCA1-NPL6 intergenic| region Length = 227 Score = 38.9 bits (89), Expect = 0.012 Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 7/108 (6%) Frame = +3 Query: 138 ASLEDSMDGVSAVVSCVGGFGSNSQ-MFKLNGTANINAIRAAAEKGIKRFVYVSA----- 299 + + D++ AVV G G + +F ++ I + A + GIKRFV VSA Sbjct: 64 SEITDAIKAYDAVVFSAGAGGKGMERIFTVDLDGCIKVVEACEKAGIKRFVVVSALKAED 123 Query: 300 ADFGLVNYLLQGYYEGKRAAEAELL-SKFTYGGVILRPGFIHGTRRVG 440 DF L+ YY KR+A+ E+ S Y IL+PG + + G Sbjct: 124 RDFWYNIKGLREYYIAKRSADREVRNSNLDY--TILQPGSLELNKGTG 169
>GME_ARATH (Q93VR3) GDP-mannose 3,5-epimerase (EC 5.1.3.18) (GDP-Man| 3,5-epimerase) Length = 377 Score = 32.3 bits (72), Expect = 1.1 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = +3 Query: 150 DSMDGVSAVVSCVGGFG---SNSQMFKLNGTA-NINAIRAAAEKGIKRFVYVSAA 302 + +D V + + +GG G SN + N T + N I AA GIKRF Y S+A Sbjct: 90 EGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSA 144
>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 1) (OsGME-1) Length = 378 Score = 30.8 bits (68), Expect = 3.3 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%) Frame = +3 Query: 150 DSMDGVSAVVSCVGGFG---SNSQMFKLNGTA-NINAIRAAAEKGIKRFVYVSAA 302 + +D V + + +GG G SN + N T + N + AA G+KRF Y S+A Sbjct: 92 NGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSA 146
>MEC4_CAEEL (P24612) Degenerin mec-4 (Mechanosensory abnormality protein 4)| Length = 768 Score = 30.8 bits (68), Expect = 3.3 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +3 Query: 216 FKLNGTANINAIRAAAEKGIKRFVYVSAADF 308 F N T N+ +IRA G++ VYV+A+D+ Sbjct: 477 FNHNRTVNLTSIRAGPMYGLRMLVYVNASDY 507
>MEC4_CAEBR (Q17298) Degenerin mec-4 (Mechanosensory protein 4)| Length = 768 Score = 30.8 bits (68), Expect = 3.3 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +3 Query: 216 FKLNGTANINAIRAAAEKGIKRFVYVSAADF 308 F N T N+ +IRA G++ VYV+A+D+ Sbjct: 477 FNHNRTVNLTSIRAGPMYGLRMLVYVNASDY 507
>CNTN1_CHICK (P14781) Contactin-1 precursor (Neural cell recognition molecule F11)| Length = 1010 Score = 30.8 bits (68), Expect = 3.3 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -3 Query: 193 PPTQDTTAETPSILSSSEAGSRRL-PWFHITLSAQDSLIDGFPDLFR 56 PP+Q P I+SS +GSR + W H+ + +S ++G+ L+R Sbjct: 895 PPSQ-----RPRIISSVRSGSRYIITWDHVKAMSNESAVEGYKVLYR 936
>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man| 3,5-epimerase 2) Length = 371 Score = 30.4 bits (67), Expect = 4.3 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%) Frame = +3 Query: 156 MDGVSAVVSCVGGFG---SNSQMFKLNGTA-NINAIRAAAEKGIKRFVYVSAA 302 +D V + + +GG G SN + N T + N + AA G+KRF Y S+A Sbjct: 87 VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSA 139
>SPT5H_CAEEL (Q21338) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1208 Score = 30.4 bits (67), Expect = 4.3 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +3 Query: 462 LVGSPMQMVLQNAKPLTRLPLVGPMLTP-PVSAALSSEG 575 LV P Q++LQ AK T P+V M +P P+++ S G Sbjct: 645 LVCKPKQLILQGAKKTTSTPMVSRMASPNPMASPRHSSG 683
>ERYA1_SACER (Q03131) Erythronolide synthase, modules 1 and 2 (EC 2.3.1.94) (ORF| 1) (6-deoxyerythronolide B synthase I) (DEBS 1) Length = 3491 Score = 30.0 bits (66), Expect = 5.6 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 17/108 (15%) Frame = +3 Query: 243 NAIRAAAEKGIKRFVYVSA----------------ADFGLVNYLLQGYYEGKRAAEAELL 374 +A+RA AE+G + F+ VSA AD ++ L +G +G A E L Sbjct: 1287 DAVRALAEQGYRTFLEVSAHPILTAAIEEIGDGSGADLSAIHSLRRG--DGSLADFGEAL 1344 Query: 375 SKFTYGGVILRPGFIH-GTRRVGSMNIPLGLVGSPMQMVLQNAKPLTR 515 S+ GV + +H GT G+ +PL + V KP+ R Sbjct: 1345 SRAFAAGVAVDWESVHLGT---GARRVPLPTYPFQRERVWLEPKPVAR 1389
>YCF39_GUITH (O78472) Hypothetical 35.9 kDa protein ycf39| Length = 314 Score = 30.0 bits (66), Expect = 5.6 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%) Frame = +3 Query: 39 GFVVSSLNRS-GKPSISESWADKVIWNQGNLLEPASLEDSMDGVSAVVSCVGGFGSNS-Q 212 G+ VS L R+ K + W ++++ G+L P +L ++ ++A++ S+ + Sbjct: 24 GYEVSCLVRNLRKAYFLKEWGAELLY--GDLSLPETLPTNLTKITAIIDASTARPSDPYK 81 Query: 213 MFKLNGTANINAIRAAAEKGIKRFVYVS 296 K++ I + AA GIKRFV+ S Sbjct: 82 AEKIDLEGKIALVEAAKVAGIKRFVFFS 109
>CNTN1_HUMAN (Q12860) Contactin-1 precursor (Neural cell surface protein F3)| (Glycoprotein gp135) Length = 1018 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -3 Query: 193 PPTQDTTAETPSILSSSEAGSRRL-PWFHITLSAQDSLIDGFPDLFR 56 PP+Q P I+SS +GSR + W H+ + +S + G+ L+R Sbjct: 904 PPSQP-----PRIISSVRSGSRYIITWDHVVALSNESTVTGYKVLYR 945
>CNTN1_BOVIN (Q28106) Contactin-1 precursor (Neural cell surface protein F3)| Length = 1018 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -3 Query: 193 PPTQDTTAETPSILSSSEAGSRRL-PWFHITLSAQDSLIDGFPDLFR 56 PP+Q P I+SS +GSR + W H+ + +S + G+ L+R Sbjct: 904 PPSQP-----PRIISSVRSGSRYIITWDHVVALSNESTVTGYKVLYR 945
>CNTN1_RAT (Q63198) Contactin-1 precursor (Neural cell surface protein F3)| Length = 1021 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -3 Query: 193 PPTQDTTAETPSILSSSEAGSRRL-PWFHITLSAQDSLIDGFPDLFR 56 PP+Q P I+SS +GSR + W H+ + +S + G+ L+R Sbjct: 906 PPSQP-----PRIISSVRSGSRYIITWDHVVALSNESTVTGYKILYR 947
>CNTN1_MOUSE (P12960) Contactin-1 precursor (Neural cell surface protein F3)| Length = 1020 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -3 Query: 193 PPTQDTTAETPSILSSSEAGSRRL-PWFHITLSAQDSLIDGFPDLFR 56 PP+Q P I+SS +GSR + W H+ + +S + G+ L+R Sbjct: 906 PPSQP-----PRIISSVRSGSRYIITWDHVVALSNESTVTGYKILYR 947 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,911,467 Number of Sequences: 219361 Number of extensions: 1948769 Number of successful extensions: 5609 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5432 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5609 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
