ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9o12 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 186 bits (471), Expect = 5e-47 Identities = 88/111 (79%), Positives = 101/111 (90%) Frame = -1 Query: 545 AWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGH 366 AWGLKNCT+KEE S+TVTAV+VPP+ID SEIV+ AW+RYNLSLGLGLNKVAGKVFRIGH Sbjct: 291 AWGLKNCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGH 350 Query: 365 LGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYLSNSTPLIPSRI 213 LG++NELQLLGCL GVEM+LKD+GYPV +GSGVAAA+ YL + PLIPSRI Sbjct: 351 LGNVNELQLLGCLAGVEMILKDVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 124 bits (312), Expect = 1e-28 Identities = 61/100 (61%), Positives = 77/100 (77%) Frame = -1 Query: 545 AWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGH 366 AWGLK C + E SDTVTA++ P +D+++I+KHA+ RYNL+LG GL++VAGKVFRIGH Sbjct: 272 AWGLKTCAKSPEWNSDTVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGH 331 Query: 365 LGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 246 +G LNEL LLG + G EM L D G V GSGVAAA++YL Sbjct: 332 VGDLNELSLLGAIAGAEMSLIDNGVKVTPGSGVAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 119 bits (299), Expect = 4e-27 Identities = 61/103 (59%), Positives = 75/103 (72%) Frame = -1 Query: 545 AWGLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGH 366 AWGLK C ++ + +SDTV+A++VP IDS+ I K A+ RYN S GLGLNKVAGKVFRIGH Sbjct: 286 AWGLKLCAKEPKWYSDTVSAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGH 345 Query: 365 LGHLNELQLLGCLGGVEMVLKDIGYPVKLGSGVAAAAAYLSNS 237 LG L+E+ + G L EM LKD G +KLGSG AAA Y S + Sbjct: 346 LGMLDEVMIGGALFAAEMALKDNGVNLKLGSGTGAAAEYFSKN 388
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 62.4 bits (150), Expect = 8e-10 Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 1/93 (1%) Frame = -1 Query: 515 EENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLL 336 +E S +TAV P +++ +I KR++++L G + ++ K+FR+GHLG +++ +L Sbjct: 292 DECASPAITAVATPG-MEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDIL 350 Query: 335 GCLGGVEMVLKDIGYP-VKLGSGVAAAAAYLSN 240 C+ +E+VL ++G+ G+GVAAAA SN Sbjct: 351 SCIASLEVVLLELGHENFNSGAGVAAAARVFSN 383
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 59.3 bits (142), Expect = 7e-09 Identities = 36/91 (39%), Positives = 51/91 (56%) Frame = -1 Query: 518 KEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQL 339 KE S TVT+ P I+ S+ +YN+ + G +AGK+FRIGH+G E ++ Sbjct: 293 KERARSVTVTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEV 352 Query: 338 LGCLGGVEMVLKDIGYPVKLGSGVAAAAAYL 246 L L VE+ LK++G+ VK SGV A L Sbjct: 353 LATLACVELALKELGFEVK-ESGVEVAKEVL 382
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 56.6 bits (135), Expect = 4e-08 Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%) Frame = -1 Query: 503 SDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLG 324 S +TAV P +++ I KR++++L G + + G++FRIGHLG + + +L + Sbjct: 296 SPAITAVA-PQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVS 354 Query: 323 GVEMVLKDIGYP-VKLGSGVAAAAAYLSNS 237 +E VL ++GY G+GVAAA+ LS + Sbjct: 355 ALEAVLAELGYTNFTPGAGVAAASRVLSTA 384
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 40.0 bits (92), Expect = 0.004 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -1 Query: 455 EIVKHAW---KRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP 288 E+ AW RYNLSLGLGLNKVA GKVFR D+GYP Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR------------------------DVGYP 134 Query: 287 VK 282 VK Sbjct: 135 VK 136
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 37.0 bits (84), Expect = 0.036 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 1/87 (1%) Frame = -1 Query: 494 VTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH-LNELQLLGCLGGV 318 VT V +P ID + ++ + + +AGK++RIG +G+ + +L L G+ Sbjct: 324 VTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGL 383 Query: 317 EMVLKDIGYPVKLGSGVAAAAAYLSNS 237 E VL ++ G + AA N+ Sbjct: 384 EAVLLRHNAGIEAGKALQAALDVYENA 410
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 36.6 bits (83), Expect = 0.047 Identities = 19/46 (41%), Positives = 26/46 (56%) Frame = -1 Query: 497 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 360 TVT V VP D +IV + +R+ + + GL GKV RIG +G Sbjct: 342 TVTTVAVPTGYDWRDIVSYLIERFGIEITGGLGPSTGKVLRIGLMG 387
>SPYA_RAT (P09139) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 35.8 bits (81), Expect = 0.081 Identities = 21/61 (34%), Positives = 30/61 (49%) Frame = -1 Query: 539 GLKNCTEKEENFSDTVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 360 GLK + E T+T V VP + +IV + +N+ + GL KV RIG LG Sbjct: 328 GLKFFVKDPEIRLPTITTVTVPAGYNWRDIVSYVLDHFNIEISGGLGPSEDKVLRIGLLG 387 Query: 359 H 357 + Sbjct: 388 Y 388
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 35.8 bits (81), Expect = 0.081 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -1 Query: 497 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 360 TVT V VP D +IV + +++ + GL GKV RIG LG Sbjct: 342 TVTTVAVPAGYDWRDIVNYVMDHFDIEITGGLGPSMGKVLRIGLLG 387
>SPYA_HUMAN (P21549) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 35.0 bits (79), Expect = 0.14 Identities = 19/46 (41%), Positives = 25/46 (54%) Frame = -1 Query: 497 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 360 TVT V VP D +IV + +++ + GL GKV RIG LG Sbjct: 320 TVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPSTGKVLRIGLLG 365
>SPYA_RABIT (P31030) Serine--pyruvate aminotransferase (EC 2.6.1.51) (SPT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 392 Score = 33.1 bits (74), Expect = 0.52 Identities = 18/46 (39%), Positives = 24/46 (52%) Frame = -1 Query: 497 TVTAVVVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 360 TVT V+VP +IV + + + + GL A KV RIG LG Sbjct: 320 TVTTVIVPASYRWRDIVSYVMHHFGIEITGGLGPSADKVLRIGLLG 365
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 0.68 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +2 Query: 239 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 331 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 31.6 bits (70), Expect = 1.5 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +1 Query: 241 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWP 372 F R A+ + +G PM+ S S PP P + S P WP Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWP 124
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 1.5 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +2 Query: 239 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 337 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 29.6 bits (65), Expect = 5.8 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +1 Query: 217 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWPI 375 L G + ER A LP+ T Y + T P QPR +W RW + Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRV 136
>UCN1_HUMAN (P55089) Urocortin precursor| Length = 124 Score = 29.3 bits (64), Expect = 7.6 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -3 Query: 330 PRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQGGREEKNK 163 PRR G G G GE +R + L FH L L++ +Q++ R E+N+ Sbjct: 63 PRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRE--RAEQNR 116
>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +2 Query: 239 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 337 ++RGTPP P R P P P+PPR G+P Sbjct: 741 DARGTPPPAPVRDPPRPQ---PSPPAPPRVGDP 770
>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related| protein) Length = 440 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +2 Query: 242 SRGTPPRPPRRCQASPGTRCP*APSPPRR 328 SRG PP PP R A P P P PP R Sbjct: 355 SRGKPPPPPSRTPAGP----PPPPPPPLR 379
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 28.9 bits (63), Expect = 9.9 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +2 Query: 242 SRGTPPRPPRRCQASPGTRCP*APSPPRR 328 SRG PP PP R A P P P PP R Sbjct: 355 SRGKPPPPPSRTPAGP----PPPPPPPLR 379
>ADA15_RAT (Q9QYV0) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 15) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15) (MDC-15) (Metalloprotease RGD disintegrin protein) (Metargidin) (CRII-7) Length = 816 Score = 28.9 bits (63), Expect = 9.9 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +2 Query: 257 PRPPRRCQASPGTR--CP*APSPPRRGNP 337 P PP+R Q PGT+ P P PPR+ P Sbjct: 748 PGPPQRAQQMPGTKPQGPTKPPPPRKPLP 776
>GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog)| Length = 597 Score = 28.9 bits (63), Expect = 9.9 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +2 Query: 242 SRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 337 S T P+PP R A+ AP+PP G+P Sbjct: 508 SHQTQPQPPPRPNANESDGSSNAPTPPNEGSP 539 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,509,678 Number of Sequences: 219361 Number of extensions: 1384695 Number of successful extensions: 5589 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5004 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5567 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
