| Clone Name | bags16c03 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 297 catgatatggtgcttgaccttataatttctctgtc 331 |||||||||||||| |||||||||||||| ||||| Sbjct: 10010886 catgatatggtgctcgaccttataatttccctgtc 10010852 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 297 catgatatggtgcttgaccttataatttctctgtc 331 ||||||||||| || |||||||||||||| ||||| Sbjct: 9980886 catgatatggtactcgaccttataatttccctgtc 9980852 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 222 ttcaatgaacttgtcaatagaagcatgatcca 253 |||||||| ||||| || |||||||||||||| Sbjct: 10010964 ttcaatgatcttgtaaacagaagcatgatcca 10010933 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 222 ttcaatgaacttgtcaatagaagcatgatcca 253 |||||||| ||||| || |||||||||||||| Sbjct: 9980964 ttcaatgatcttgtaaacagaagcatgatcca 9980933 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 222 ttcaatgaacttgtcaatagaagcatgatcca 253 |||||||| ||| |||| |||||||||||||| Sbjct: 5127204 ttcaatgagcttatcaacagaagcatgatcca 5127235
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 297 catgatatggtgcttgaccttataatttctctgtc 331 |||||||||||||| |||||||||||||| ||||| Sbjct: 10010771 catgatatggtgctcgaccttataatttccctgtc 10010737 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 297 catgatatggtgcttgaccttataatttctctgtc 331 ||||||||||| || |||||||||||||| ||||| Sbjct: 9980771 catgatatggtactcgaccttataatttccctgtc 9980737 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 222 ttcaatgaacttgtcaatagaagcatgatcca 253 |||||||| ||||| || |||||||||||||| Sbjct: 10010849 ttcaatgatcttgtaaacagaagcatgatcca 10010818 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 222 ttcaatgaacttgtcaatagaagcatgatcca 253 |||||||| ||||| || |||||||||||||| Sbjct: 9980849 ttcaatgatcttgtaaacagaagcatgatcca 9980818 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 222 ttcaatgaacttgtcaatagaagcatgatcca 253 |||||||| ||| |||| |||||||||||||| Sbjct: 5127186 ttcaatgagcttatcaacagaagcatgatcca 5127217
>emb|AL732642.4|CNS08C9H Oryza sativa chromosome 12, . BAC OSJNBb0071E08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132906 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 297 catgatatggtgcttgaccttataatttctctgtc 331 |||||||||||||| |||||||||||||| ||||| Sbjct: 47188 catgatatggtgctcgaccttataatttccctgtc 47222 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 297 catgatatggtgcttgaccttataatttctctgtc 331 ||||||||||| || |||||||||||||| ||||| Sbjct: 77188 catgatatggtactcgaccttataatttccctgtc 77222 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 222 ttcaatgaacttgtcaatagaagcatgatcca 253 |||||||| ||||| || |||||||||||||| Sbjct: 77110 ttcaatgatcttgtaaacagaagcatgatcca 77141 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 222 ttcaatgaacttgtcaatagaagcatgatcca 253 |||||||| ||||| || |||||||||||||| Sbjct: 47110 ttcaatgatcttgtaaacagaagcatgatcca 47141
>emb|CR318662.11| Zebrafish DNA sequence from clone CH211-213L7 in linkage group 10, complete sequence Length = 200648 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 339 gagaattttgccactgttttaaatg 363 ||||||||||||||||||||||||| Sbjct: 188993 gagaattttgccactgttttaaatg 188969
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 214 agagttgtttcaatgaacttgtcaatagaagcatg 248 |||||| ||||||||| ||||| |||||||||||| Sbjct: 13964172 agagttatttcaatgagcttgtaaatagaagcatg 13964138
>dbj|AP003764.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1051E10 Length = 207782 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 214 agagttgtttcaatgaacttgtcaatagaagcatg 248 |||||| ||||||||| ||||| |||||||||||| Sbjct: 124474 agagttatttcaatgagcttgtaaatagaagcatg 124440
>dbj|AP003258.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0463A02 Length = 151041 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 214 agagttgtttcaatgaacttgtcaatagaagcatg 248 |||||| ||||||||| ||||| |||||||||||| Sbjct: 39917 agagttatttcaatgagcttgtaaatagaagcatg 39883
>ref|XM_465120.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3823 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 294 gttcatgatatggtgcttgaccttat 319 |||||||||||||||||||| ||||| Sbjct: 1847 gttcatgatatggtgcttgatcttat 1872
>gb|AC154568.2| Mus musculus BAC clone RP23-246L11 from chromosome 16, complete sequence Length = 182206 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 278 agaaaaatattgtcaggttcat 299 |||||||||||||||||||||| Sbjct: 131253 agaaaaatattgtcaggttcat 131274
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 294 gttcatgatatggtgcttgaccttat 319 |||||||||||||||||||| ||||| Sbjct: 11703388 gttcatgatatggtgcttgatcttat 11703363
>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0010K08 Length = 184760 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 294 gttcatgatatggtgcttgaccttat 319 |||||||||||||||||||| ||||| Sbjct: 149677 gttcatgatatggtgcttgatcttat 149652
>dbj|AP005310.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0477B05 Length = 142166 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Minus Query: 294 gttcatgatatggtgcttgaccttat 319 |||||||||||||||||||| ||||| Sbjct: 11278 gttcatgatatggtgcttgatcttat 11253
>dbj|AK101276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033B21, full insert sequence Length = 4410 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 294 gttcatgatatggtgcttgaccttat 319 |||||||||||||||||||| ||||| Sbjct: 3832 gttcatgatatggtgcttgatcttat 3857
>dbj|AK067818.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H12, full insert sequence Length = 3823 Score = 44.1 bits (22), Expect = 0.43 Identities = 25/26 (96%) Strand = Plus / Plus Query: 294 gttcatgatatggtgcttgaccttat 319 |||||||||||||||||||| ||||| Sbjct: 1847 gttcatgatatggtgcttgatcttat 1872
>ref|XM_477557.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2742 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 atggaaatggatagccgaagg 172 ||||||||||||||||||||| Sbjct: 1323 atggaaatggatagccgaagg 1343
>gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072P10, complete sequence Length = 147540 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 386 caagatccgccgactctccctacaatcta 414 ||||||||||||||| ||||| ||||||| Sbjct: 24227 caagatccgccgactatccctccaatcta 24255 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 catgatatggtgcttgacct 316 |||||||||||||||||||| Sbjct: 24135 catgatatggtgcttgacct 24154
>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05, complete sequence Length = 148785 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 386 caagatccgccgactctccctacaatcta 414 ||||||||||||||| ||||| ||||||| Sbjct: 74143 caagatccgccgactatccctccaatcta 74171 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 catgatatggtgcttgacct 316 |||||||||||||||||||| Sbjct: 74051 catgatatggtgcttgacct 74070
>gb|AC141111.25| Medicago truncatula clone mth2-20c17, complete sequence Length = 113836 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 97 tattatacttatgtatatatc 117 ||||||||||||||||||||| Sbjct: 3432 tattatacttatgtatatatc 3452
>emb|AJ251835.1|MMU251835 Mus musculus Kcnq1, Ltrpc5, Mash2, Tapa-1, Tssc4 and Tssc6 genes, alternative transcripts Length = 249487 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 ttgccactgttttaaatggtg 366 ||||||||||||||||||||| Sbjct: 110738 ttgccactgttttaaatggtg 110758
>emb|BX927098.24| Zebrafish DNA sequence from clone DKEY-228D14 in linkage group 13, complete sequence Length = 229413 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 acttgaagacttgtttattat 102 ||||||||||||||||||||| Sbjct: 167569 acttgaagacttgtttattat 167589
>dbj|AP001287.2| Mus musculus genomic DNA, chromosome 7, clone:B118_2, complete sequence Length = 80606 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 ttgccactgttttaaatggtg 366 ||||||||||||||||||||| Sbjct: 53553 ttgccactgttttaaatggtg 53573
>gb|AC074354.8|AC074354 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0065C16, from Chromosome 10, complete sequence Length = 146391 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 221 tttcaatgaacttgtcaatagaagcatgatcca 253 ||||||||| ||| |||| |||||||||||||| Sbjct: 34508 tttcaatgagcttatcaacagaagcatgatcca 34476
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 386 caagatccgccgactctccctacaatcta 414 ||||||||||||||| ||||| ||||||| Sbjct: 19668648 caagatccgccgactatccctccaatcta 19668676 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 152 atggaaatggatagccgaaggatt 175 ||||| |||||||||||||||||| Sbjct: 21589933 atggatatggatagccgaaggatt 21589956 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 catgatatggtgcttgacct 316 |||||||||||||||||||| Sbjct: 19668556 catgatatggtgcttgacct 19668575
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 221 tttcaatgaacttgtcaatagaagcatgatcca 253 ||||||||| ||| |||| |||||||||||||| Sbjct: 8486282 tttcaatgagcttatcaacagaagcatgatcca 8486314
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 atggaaatggatagccgaagg 172 ||||||||||||||||||||| Sbjct: 11466011 atggaaatggatagccgaagg 11465991
>emb|BX005315.7| Zebrafish DNA sequence from clone DKEY-79E6, complete sequence Length = 130903 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 47 tatattgttacttagttactg 67 ||||||||||||||||||||| Sbjct: 26146 tatattgttacttagttactg 26126
>gb|AF149114.1|AF149114 Triticum aestivum stripe rust resistance protein Yr10 (Yr10) mRNA, complete cds Length = 2475 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 152 atggaaatggatagccgaaggattc 176 |||||||||||||| |||||||||| Sbjct: 1350 atggaaatggataggcgaaggattc 1374
>gb|AF149112.1|AF149112 Triticum aestivum stripe rust resistance protein Yr10 (Yr10) gene, complete cds Length = 3630 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 152 atggaaatggatagccgaaggattc 176 |||||||||||||| |||||||||| Sbjct: 2505 atggaaatggataggcgaaggattc 2529
>dbj|AP005830.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1120F06 Length = 186712 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 atggaaatggatagccgaagg 172 ||||||||||||||||||||| Sbjct: 29669 atggaaatggatagccgaagg 29649
>dbj|AP005258.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446G09 Length = 146898 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 atggaaatggatagccgaagg 172 ||||||||||||||||||||| Sbjct: 75531 atggaaatggatagccgaagg 75511
>emb|AL954702.9| Zebrafish DNA sequence from clone CH211-217A1, complete sequence Length = 201021 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 tatattgttacttagttactg 67 ||||||||||||||||||||| Sbjct: 145086 tatattgttacttagttactg 145106
>gb|AC015800.13| Mus musculus chromosome 7, clone RP23-366M16, complete sequence Length = 200026 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 346 ttgccactgttttaaatggtg 366 ||||||||||||||||||||| Sbjct: 148802 ttgccactgttttaaatggtg 148782
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 221 tttcaatgaacttgtcaatagaagcatgatcca 253 ||||||||| ||| |||| |||||||||||||| Sbjct: 8491381 tttcaatgagcttatcaacagaagcatgatcca 8491413
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 386 caagatccgccgactctccctacaatcta 414 ||||||||||||||| ||||| ||||||| Sbjct: 19954505 caagatccgccgactatccctccaatcta 19954533 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 152 atggaaatggatagccgaaggatt 175 ||||| |||||||||||||||||| Sbjct: 21900132 atggatatggatagccgaaggatt 21900155 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 catgatatggtgcttgacct 316 |||||||||||||||||||| Sbjct: 19954413 catgatatggtgcttgacct 19954432
>emb|AJ251788.1|MMU251788 Mus musculus Tssc6 gene Length = 249487 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 346 ttgccactgttttaaatggtg 366 ||||||||||||||||||||| Sbjct: 110738 ttgccactgttttaaatggtg 110758
>gb|AC122014.3| Mus musculus chromosome 1 clone RP24-358F15, complete sequence Length = 168526 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tattatacttatgtatatat 116 |||||||||||||||||||| Sbjct: 116616 tattatacttatgtatatat 116597
>ref|XM_480282.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2937 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 gttcatgatatggtgcttga 313 |||||||||||||||||||| Sbjct: 1483 gttcatgatatggtgcttga 1502
>gb|AF527807.1| Sorghum bicolor clone BAC SB_BBc0126P21 php200725 orthologous region Length = 75840 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 catgatatggtgcttgaccttata 320 ||||||||||||||||| |||||| Sbjct: 52587 catgatatggtgcttgatcttata 52564
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gaaatttatatgaagaagca 212 |||||||||||||||||||| Sbjct: 4381692 gaaatttatatgaagaagca 4381673
>ref|NG_001335.1| Homo sapiens genomic large histone family cluster (HFL@) on chromosome 6 Length = 269712 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 gtttgaacaaaaaggggaaa 438 |||||||||||||||||||| Sbjct: 2961 gtttgaacaaaaaggggaaa 2942
>gb|AC122527.3| Mus musculus BAC clone RP24-502E10 from chromosome 6, complete sequence Length = 180682 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 agttggtttgaacaaaaagg 433 |||||||||||||||||||| Sbjct: 70885 agttggtttgaacaaaaagg 70866
>gb|AC160465.3| Mus musculus chromosome 8, clone RP23-267N9, complete sequence Length = 224985 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 tttgaacaaaaaggggaaat 439 |||||||||||||||||||| Sbjct: 168478 tttgaacaaaaaggggaaat 168497
>gb|AC145398.2| Rattus norvegicus chromosome 1 clone RP32-604H24 map q35-q36, complete sequence Length = 165235 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tttattatacttatgtatat 114 |||||||||||||||||||| Sbjct: 162136 tttattatacttatgtatat 162117
>gb|AC145397.1| Rattus norvegicus chromosome 1 clone RP32-96B07 map q35-q36, complete sequence Length = 156967 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tttattatacttatgtatat 114 |||||||||||||||||||| Sbjct: 121889 tttattatacttatgtatat 121870
>gb|AC125171.4| Mus musculus BAC clone RP24-475M20 from chromosome 6, complete sequence Length = 167590 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 414 agttggtttgaacaaaaagg 433 |||||||||||||||||||| Sbjct: 85576 agttggtttgaacaaaaagg 85557
>gb|BC054991.1| Xenopus laevis RNA binding motif protein 7, mRNA (cDNA clone MGC:64563 IMAGE:6880249), complete cds Length = 2200 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 gacatatattgttacttagttact 66 ||||||||||||||||||| |||| Sbjct: 1442 gacatatattgttacttagctact 1419
>gb|AC102102.7| Mus musculus chromosome 16, clone RP23-79F12, complete sequence Length = 194828 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gtgaagaactgaaatggaaa 158 |||||||||||||||||||| Sbjct: 66123 gtgaagaactgaaatggaaa 66142
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10, complete sequence Length = 170681 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 152 atggaaatggatagccgaaggatt 175 ||||| |||||||||||||||||| Sbjct: 113452 atggatatggatagccgaaggatt 113475
>emb|AL365449.10| Human DNA sequence from clone RP11-165P9 on chromosome 10 Contains part of the gene forVPS10 domain receptor protein SORCS 3 (SORCS3), complete sequence Length = 39859 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 tatatgaagaagcacagagt 218 |||||||||||||||||||| Sbjct: 5445 tatatgaagaagcacagagt 5426
>emb|AL158052.10| Human DNA sequence from clone RP11-570J20 on chromosome 9q33.1-34.12 Contains three novel genes, the 3' end of the LHX2 gene for LIM homeobox protein 2 and four CpG islands, complete sequence Length = 221887 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 aagaaaaatattgtcaggtt 296 |||||||||||||||||||| Sbjct: 188507 aagaaaaatattgtcaggtt 188488
>emb|AL035696.14|HS416J7 Human DNA sequence from clone RP3-416J7 on chromosome 6p25 Contains a novel pseudogene, parts of 2 novel genes and a CpG island, complete sequence Length = 124034 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cagttttgaagaaaaatatt 288 |||||||||||||||||||| Sbjct: 101670 cagttttgaagaaaaatatt 101689
>emb|CR293500.7| Zebrafish DNA sequence from clone DKEY-211I20 in linkage group 18, complete sequence Length = 164140 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ttgtgaagaactgaaatgga 156 |||||||||||||||||||| Sbjct: 35555 ttgtgaagaactgaaatgga 35536
>gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, complete sequence Length = 168708 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 attttgccactgttttaaat 362 |||||||||||||||||||| Sbjct: 16691 attttgccactgttttaaat 16710
>gb|U91328.1|HSU91328 Human hereditary haemochromatosis region, histone 2A-like protein gene, hereditary haemochromatosis (HLA-H) gene, RoRet gene, and sodium phosphate transporter (NPT3) gene, complete cds Length = 246282 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 419 gtttgaacaaaaaggggaaa 438 |||||||||||||||||||| Sbjct: 122040 gtttgaacaaaaaggggaaa 122059
>gb|AC008547.6| Homo sapiens chromosome 5 clone CTC-502M5, complete sequence Length = 114005 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 attttgccactgttttaaat 362 |||||||||||||||||||| Sbjct: 106514 attttgccactgttttaaat 106495
>gb|AC008840.5| Homo sapiens chromosome 5 clone CTD-2154I11, complete sequence Length = 126746 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 attttgccactgttttaaat 362 |||||||||||||||||||| Sbjct: 120135 attttgccactgttttaaat 120154
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gttcatgatatggtgcttga 313 |||||||||||||||||||| Sbjct: 3747906 gttcatgatatggtgcttga 3747887
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 214 agagttgtttcaatgaacttgtcaatagaagc 245 |||||| |||||||||||| ||||||||||| Sbjct: 5959660 agagttatttcaatgaactgatcaatagaagc 5959629 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gttcatgatatggtgcttga 313 |||||||||||||||||||| Sbjct: 4078158 gttcatgatatggtgcttga 4078139
>gb|AC008511.6|AC008511 Homo sapiens chromosome 5 clone CTC-454D3, complete sequence Length = 160770 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 attttgccactgttttaaat 362 |||||||||||||||||||| Sbjct: 14605 attttgccactgttttaaat 14586
>gb|AC102574.9| Mus musculus chromosome 8, clone RP23-239K24, complete sequence Length = 193168 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 tttgaacaaaaaggggaaat 439 |||||||||||||||||||| Sbjct: 24691 tttgaacaaaaaggggaaat 24672
>gb|AC021659.16| Homo sapiens 3 BAC RP11-446K3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 101800 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 aagcatgatccagctacttc 261 |||||||||||||||||||| Sbjct: 56138 aagcatgatccagctacttc 56157
>dbj|AP005442.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073I05 Length = 182291 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 214 agagttgtttcaatgaacttgtcaatagaagc 245 |||||| |||||||||||| ||||||||||| Sbjct: 146770 agagttatttcaatgaactgatcaatagaagc 146739
>emb|BX649616.5| Zebrafish DNA sequence from clone CH211-165K17 in linkage group 18, complete sequence Length = 131062 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 ttgtgaagaactgaaatgga 156 |||||||||||||||||||| Sbjct: 16240 ttgtgaagaactgaaatgga 16221
>dbj|AP003858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_H11 Length = 122464 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 214 agagttgtttcaatgaacttgtcaatagaagc 245 |||||| |||||||||||| ||||||||||| Sbjct: 10472 agagttatttcaatgaactgatcaatagaagc 10441
>dbj|AP005578.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1695_A02 Length = 156214 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gttcatgatatggtgcttga 313 |||||||||||||||||||| Sbjct: 156167 gttcatgatatggtgcttga 156148
>dbj|AP005553.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1116_H10 Length = 101054 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gttcatgatatggtgcttga 313 |||||||||||||||||||| Sbjct: 55208 gttcatgatatggtgcttga 55189
>dbj|AP004560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0462E11 Length = 166115 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gttcatgatatggtgcttga 313 |||||||||||||||||||| Sbjct: 165455 gttcatgatatggtgcttga 165436
>dbj|AP005501.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0458D06 Length = 166038 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gttcatgatatggtgcttga 313 |||||||||||||||||||| Sbjct: 71271 gttcatgatatggtgcttga 71252
>dbj|AP004157.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1114_D06 Length = 107621 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 214 agagttgtttcaatgaacttgtcaatagaagc 245 |||||| |||||||||||| ||||||||||| Sbjct: 52763 agagttatttcaatgaactgatcaatagaagc 52732
>dbj|AK070769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069F16, full insert sequence Length = 3101 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 214 agagttgtttcaatgaacttgtcaatagaagc 245 |||||| |||||||||||| ||||||||||| Sbjct: 1603 agagttatttcaatgaactgatcaatagaagc 1634
>gb|AC003691.1|AC003691 Human Chromosome 11q23 PAC clone pDJ254e13, complete sequence Length = 65020 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 attttgccactgttttaaat 362 |||||||||||||||||||| Sbjct: 44594 attttgccactgttttaaat 44613
>emb|AL713901.3|CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 112231 Score = 40.1 bits (20), Expect = 6.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 222 ttcaatgaacttgtcaatagaagcatgatcca 253 |||||||| ||| |||| |||||||||||||| Sbjct: 97857 ttcaatgagcttatcaacagaagcatgatcca 97888
>gb|AC154292.1| Mus musculus BAC clone RP24-488N1 from 16, complete sequence Length = 192613 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 gtgaagaactgaaatggaaa 158 |||||||||||||||||||| Sbjct: 19338 gtgaagaactgaaatggaaa 19319
>emb|AL935125.13| Zebrafish DNA sequence from clone CH211-168K15, complete sequence Length = 160047 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 440 ccaagccatcacaagaagcaagtt 463 |||| ||||||||||||||||||| Sbjct: 136959 ccaacccatcacaagaagcaagtt 136982
>emb|AL713916.13| Mouse DNA sequence from clone RP23-129N3 on chromosome 1, complete sequence Length = 102194 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 424 aacaaaaaggggaaatccaagcca 447 ||||||||| |||||||||||||| Sbjct: 34621 aacaaaaagaggaaatccaagcca 34644 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,821,223 Number of Sequences: 3902068 Number of extensions: 5821223 Number of successful extensions: 153453 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 152664 Number of HSP's gapped (non-prelim): 789 length of query: 494 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 472 effective length of database: 17,147,199,772 effective search space: 8093478292384 effective search space used: 8093478292384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)