Clone Information

BLAST Search Result

Clone Name	rbaal9o11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AK105174.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	111	2e-21
2	dbj\|AK071521.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	111	2e-21
3	ref\|NM_192278.1\| Oryza sativa (japonica cultivar-group), predic...	84	4e-13
4	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	84	4e-13
5	dbj\|AP003725.3\| Oryza sativa (japonica cultivar-group) genomic D...	84	4e-13
6	dbj\|AP003855.3\| Oryza sativa (japonica cultivar-group) genomic D...	84	4e-13
7	gb\|AC153954.3\| Mus musculus 10 BAC RP24-236E2 (Roswell Park Canc...	46	0.096
8	emb\|BX547936.5\| Mouse DNA sequence from clone RP23-109A11 on chr...	46	0.096
9	emb\|CR555305.5\| Mouse DNA sequence from clone CH25-525H24 on chr...	44	0.38
10	gb\|AC175052.2\| Mus musculus chromosome 19, clone wi1-2093M24, co...	44	0.38
11	emb\|AL671916.5\| Mouse DNA sequence from clone RP23-294O1 on chro...	44	0.38
12	emb\|AL672204.7\| Mouse DNA sequence from clone RP23-325N6 on chro...	44	0.38
13	emb\|BX927152.1\| Corynebacterium glutamicum ATCC 13032, IS finger...	42	1.5
14	gb\|AC080100.7\| Homo sapiens chromosome 11, clone RP11-454H19, co...	42	1.5
15	gb\|AC099015.1\| Drosophila melanogaster, chromosome 2R, region 48...	42	1.5
16	gb\|AC154175.2\| Ornithorhynchus anatinus chromosome UNK clone OAB...	42	1.5
17	dbj\|BA000036.3\| Corynebacterium glutamicum ATCC 13032 DNA, compl...	42	1.5
18	gb\|AC011742.3\| Homo sapiens BAC clone RP11-214J9 from 2, complet...	42	1.5
19	gb\|AY105604.1\| Zea mays PCO129373 mRNA sequence	42	1.5
20	gb\|AE003824.3\| Drosophila melanogaster chromosome 2R, section 26...	42	1.5
21	gb\|AC005467.1\|AC005467 Drosophila melanogaster, chromosome 2R, r...	42	1.5
22	emb\|AL772160.8\| Mouse DNA sequence from clone RP23-85H5 on chrom...	42	1.5
23	gb\|AC149057.7\| Mus musculus BAC clone RP23-345D18 from chromosom...	40	5.9
24	gb\|AC119877.9\| Mus musculus chromosome 3, clone RP24-324H23, com...	40	5.9
25	gb\|AC186367.2\| Gallus gallus BAC clone TAM31-55N19 from chromoso...	40	5.9
26	gb\|CP000117.1\| Anabaena variabilis ATCC 29413 chromosome, comple...	40	5.9
27	gb\|AC133602.3\| Mus musculus BAC clone RP24-255I9 from chromosome...	40	5.9
28	gb\|AC127545.4\| Mus musculus BAC clone RP24-562H22 from chromosom...	40	5.9
29	gb\|AC123857.4\| Mus musculus BAC clone RP23-344L21 from chromosom...	40	5.9
30	gb\|AC122520.2\| Mus musculus BAC clone RP24-470M22 from 6, comple...	40	5.9
31	gb\|AC111140.11\| Mus musculus chromosome 3, clone RP23-369L16, co...	40	5.9
32	gb\|AC102604.13\| Mus musculus chromosome 19, clone RP23-385L22, c...	40	5.9
33	emb\|AL672032.6\| Human DNA sequence from clone RP11-308B5 on chro...	40	5.9
34	emb\|AL603783.14\| Human DNA sequence from clone RP11-216B13 on ch...	40	5.9
35	emb\|AL390205.17\| Human DNA sequence from clone RP11-15H7 on chro...	40	5.9
36	ref\|XM_784164.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	5.9
37	ref\|XM_783415.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	5.9
38	emb\|AL645846.12\| Mouse DNA sequence from clone RP23-244C22 on ch...	40	5.9
39	gb\|AC154210.2\| Mus musculus BAC clone RP24-113C3 from chromosome...	40	5.9
40	gb\|AC151734.3\| Mus musculus BAC clone RP23-22O15 from chromosome...	40	5.9
41	gb\|AC090610.6\| Homo sapiens chromosome 17, clone RP11-493I24, co...	40	5.9
42	dbj\|AP003380.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.9
43	gb\|AF331848.1\| Mus musculus trophinin gene, complete cds	40	5.9
44	gb\|AC002091.2\| Homo sapiens chromosome 17, clone CTB-41I6, compl...	40	5.9
45	gb\|AC163646.2\| Mus musculus BAC clone RP23-207D1 from chromosome...	40	5.9
46	dbj\|AK020404.1\| Mus musculus 12 days embryo embryonic body betwe...	40	5.9
47	gb\|AC159632.2\| Mus musculus BAC clone RP24-161A16 from chromosom...	40	5.9
48	gb\|AC010917.16\|AC010917 Drosophila melanogaster, chromosome X, r...	40	5.9
49	gb\|AC011706.14\|AC011706 Drosophila melanogaster, chromosome X, r...	40	5.9
50	gb\|AC154249.2\| Mus musculus BAC clone RP24-188L2 from chromosome...	40	5.9
51	gb\|AF282508.2\|AF282508 Homo sapiens clone 2ptel_c12t3 sequence	40	5.9
52	gb\|AC079779.7\| Homo sapiens BAC clone RP11-356M6 from 2, complet...	40	5.9
53	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	5.9
54	dbj\|AP006531.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.9
55	dbj\|BA000019.2\| Nostoc sp. PCC 7120 DNA, complete genome	40	5.9
56	gb\|BC087832.1\| Mus musculus C1q and tumor necrosis factor relate...	40	5.9
57	emb\|AL672150.19\| Mouse DNA sequence from clone RP23-338A17 on ch...	40	5.9
58	gb\|AE003570.4\| Drosophila melanogaster chromosome X, section 69 ...	40	5.9
59	gb\|AF042276.1\|AF042276 Pseudomonas putida o251 homolog, poly(hyd...	40	5.9
60	gb\|AC123702.11\| Mus musculus chromosome 19, clone RP23-341D12, c...	40	5.9
61	gb\|U25847.1\|HSACP1S1 Human red cell-type low molecular weight ac...	40	5.9
62	gb\|AC167242.4\| Mus musculus BAC clone RP24-354I16 from chromosom...	40	5.9
63	emb\|CT030241.6\| Mouse DNA sequence from clone RP23-377I11 on chr...	40	5.9
64	emb\|AL672241.6\| Mouse DNA sequence from clone RP23-147D3 on chro...	40	5.9
65	emb\|AL683888.10\| Mouse DNA sequence from clone RP23-462C12 on ch...	40	5.9
66	emb\|AL844895.6\| Mouse DNA sequence from clone RP23-359N12 on chr...	40	5.9

>dbj|AK105174.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-H01, full
           insert sequence
          Length = 458

 Score =  111 bits (56), Expect = 2e-21
 Identities = 110/128 (85%)
 Strand = Plus / Minus

                                                                       
Query: 173 tcagttttttgctgctgctggcttggtgctcttgaccctcttcttaggctcccgtggctt 232
           ||||||||| ||||| || |||||| ||||||| ||| ||||||| |||||||| |||||
Sbjct: 256 tcagtttttggctgccgccggcttgctgctcttcaccttcttcttgggctcccggggctt 197

                                                                       
Query: 233 tgactcagccttcttgatgccgcccttggcggctgctggcttggtcgccgtgttactgag 292
              |||||||||||||| ||||||||||||||| || ||||| |||||||| | ||||||
Sbjct: 196 ctgctcagccttcttgacgccgcccttggcggccgcgggcttcgtcgccgtctcactgag 137

                   
Query: 293 ctttgcag 300
           ||| ||||
Sbjct: 136 cttggcag 129



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 346 caagtccggttggcttcacggccttcagggatgccattctt 386
           |||||||||  || |||||||||||||| || |||||||||
Sbjct: 116 caagtccggcaggtttcacggccttcagagaagccattctt 76

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>dbj|AK071521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099A13, full
           insert sequence
          Length = 452

 Score =  111 bits (56), Expect = 2e-21
 Identities = 110/128 (85%)
 Strand = Plus / Minus

                                                                       
Query: 173 tcagttttttgctgctgctggcttggtgctcttgaccctcttcttaggctcccgtggctt 232
           ||||||||| ||||| || |||||| ||||||| ||| ||||||| |||||||| |||||
Sbjct: 257 tcagtttttggctgccgccggcttgctgctcttcaccttcttcttgggctcccggggctt 198

                                                                       
Query: 233 tgactcagccttcttgatgccgcccttggcggctgctggcttggtcgccgtgttactgag 292
              |||||||||||||| ||||||||||||||| || ||||| |||||||| | ||||||
Sbjct: 197 ctgctcagccttcttgacgccgcccttggcggccgcgggcttcgtcgccgtctcactgag 138

                   
Query: 293 ctttgcag 300
           ||| ||||
Sbjct: 137 cttggcag 130



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 346 caagtccggttggcttcacggccttcagggatgccattctt 386
           |||||||||  || |||||||||||||| || |||||||||
Sbjct: 117 caagtccggcaggtttcacggccttcagagaagccattctt 77

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>ref|NM_192278.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 165

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                       
Query: 211 tcttcttaggctcccgtggctttgactcagccttcttgatgccgcccttggcggctgctg 270
           ||||||| |||||||| |||||   |||||||||||||| ||||||||||||||| || |
Sbjct: 139 tcttcttgggctcccggggcttctgctcagccttcttgacgccgcccttggcggccgcgg 80

                                         
Query: 271 gcttggtcgccgtgttactgagctttgcag 300
           |||| |||||||| | ||||||||| ||||
Sbjct: 79  gcttcgtcgccgtctcactgagcttggcag 50

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                            
Query: 211      tcttcttaggctcccgtggctttgactcagccttcttgatgccgcccttggcggctgctg 270
                ||||||| |||||||| |||||   |||||||||||||| ||||||||||||||| || |
Sbjct: 25794734 tcttcttgggctcccggggcttctgctcagccttcttgacgccgcccttggcggccgcgg 25794793

                                              
Query: 271      gcttggtcgccgtgttactgagctttgcag 300
                |||| |||||||| | ||||||||| ||||
Sbjct: 25794794 gcttcgtcgccgtctcactgagcttggcag 25794823



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 346      caagtccggttggcttcacggccttcagggatgccattctt 386
                |||||||||  || |||||||||||||| || |||||||||
Sbjct: 25794836 caagtccggcaggtttcacggccttcagagaagccattctt 25794876



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 81       atgggagacagaggaaggga 100
                ||||||||||||||||||||
Sbjct: 39448002 atgggagacagaggaaggga 39447983

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>dbj|AP003725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0510C12
          Length = 177049

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                         
Query: 211   tcttcttaggctcccgtggctttgactcagccttcttgatgccgcccttggcggctgctg 270
             ||||||| |||||||| |||||   |||||||||||||| ||||||||||||||| || |
Sbjct: 34658 tcttcttgggctcccggggcttctgctcagccttcttgacgccgcccttggcggccgcgg 34717

                                           
Query: 271   gcttggtcgccgtgttactgagctttgcag 300
             |||| |||||||| | ||||||||| ||||
Sbjct: 34718 gcttcgtcgccgtctcactgagcttggcag 34747



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 346   caagtccggttggcttcacggccttcagggatgccattctt 386
             |||||||||  || |||||||||||||| || |||||||||
Sbjct: 34760 caagtccggcaggtttcacggccttcagagaagccattctt 34800

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>dbj|AP003855.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0039G05
          Length = 138429

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                         
Query: 211   tcttcttaggctcccgtggctttgactcagccttcttgatgccgcccttggcggctgctg 270
             ||||||| |||||||| |||||   |||||||||||||| ||||||||||||||| || |
Sbjct: 97198 tcttcttgggctcccggggcttctgctcagccttcttgacgccgcccttggcggccgcgg 97257

                                           
Query: 271   gcttggtcgccgtgttactgagctttgcag 300
             |||| |||||||| | ||||||||| ||||
Sbjct: 97258 gcttcgtcgccgtctcactgagcttggcag 97287



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 346   caagtccggttggcttcacggccttcagggatgccattctt 386
             |||||||||  || |||||||||||||| || |||||||||
Sbjct: 97300 caagtccggcaggtttcacggccttcagagaagccattctt 97340

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>gb|AC153954.3| Mus musculus 10 BAC RP24-236E2 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 151818

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 78    atcatgggagacagaggaaggga 100
             |||||||||||||||||||||||
Sbjct: 73330 atcatgggagacagaggaaggga 73352

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>emb|BX547936.5| Mouse DNA sequence from clone RP23-109A11 on chromosome X, complete
             sequence
          Length = 70333

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 78    atcatgggagacagaggaaggga 100
             |||||||||||||||||||||||
Sbjct: 34704 atcatgggagacagaggaaggga 34682

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>emb|CR555305.5| Mouse DNA sequence from clone CH25-525H24 on chromosome 11, complete
             sequence
          Length = 121111

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 78    atcatgggagacagaggaaggg 99
             ||||||||||||||||||||||
Sbjct: 51454 atcatgggagacagaggaaggg 51475

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>gb|AC175052.2| Mus musculus chromosome 19, clone wi1-2093M24, complete sequence
          Length = 37627

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 78   atcatgggagacagaggaaggg 99
            ||||||||||||||||||||||
Sbjct: 4619 atcatgggagacagaggaaggg 4598

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>emb|AL671916.5| Mouse DNA sequence from clone RP23-294O1 on chromosome X, complete
             sequence
          Length = 205436

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 79    tcatgggagacagaggaaggga 100
             ||||||||||||||||||||||
Sbjct: 28797 tcatgggagacagaggaaggga 28776

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>emb|AL672204.7| Mouse DNA sequence from clone RP23-325N6 on chromosome X, complete
             sequence
          Length = 129254

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 79    tcatgggagacagaggaaggga 100
             ||||||||||||||||||||||
Sbjct: 49554 tcatgggagacagaggaaggga 49575



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 78     atcatgggagacagaggaagggaa 101
              ||||||||||||||||| ||||||
Sbjct: 100824 atcatgggagacagagggagggaa 100801

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>emb|BX927152.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 5/10
          Length = 349799

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 272    cttggtcgccgtgttactgag 292
              |||||||||||||||||||||
Sbjct: 274736 cttggtcgccgtgttactgag 274756

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>gb|AC080100.7| Homo sapiens chromosome 11, clone RP11-454H19, complete sequence
          Length = 149466

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    gagacagaggaagggaaaggc 105
             |||||||||||||||||||||
Sbjct: 82654 gagacagaggaagggaaaggc 82634

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>gb|AC099015.1| Drosophila melanogaster, chromosome 2R, region 48C-49A, BAC clone
             BACR26P21, complete sequence
          Length = 157010

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   gttctcctgctgccgttgtca 175
             |||||||||||||||||||||
Sbjct: 29685 gttctcctgctgccgttgtca 29705

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>gb|AC154175.2| Ornithorhynchus anatinus chromosome UNK clone OABb-419P24, complete
              sequence
          Length = 163751

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 80     catgggagacagaggaagggaaagg 104
              ||||||||||||||| |||||||||
Sbjct: 108960 catgggagacagagggagggaaagg 108984

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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 272     cttggtcgccgtgttactgag 292
               |||||||||||||||||||||
Sbjct: 1668961 cttggtcgccgtgttactgag 1668981

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>gb|AC011742.3| Homo sapiens BAC clone RP11-214J9 from 2, complete sequence
          Length = 181210

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 86     agacagaggaagggaaaggca 106
              |||||||||||||||||||||
Sbjct: 167354 agacagaggaagggaaaggca 167374

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>gb|AY105604.1| Zea mays PCO129373 mRNA sequence
          Length = 668

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 48/57 (84%)
 Strand = Plus / Minus

                                                                    
Query: 327 ggctccttggcctgcccttcaagtccggttggcttcacggccttcagggatgccatt 383
           ||||||||| ||||| |  ||| |||| | |||||| ||||||||||||| ||||||
Sbjct: 136 ggctccttgccctgcgccgcaactccgctgggcttcgcggccttcagggaagccatt 80

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>gb|AE003824.3| Drosophila melanogaster chromosome 2R, section 26 of 73 of the complete
             sequence
          Length = 268836

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 155   gttctcctgctgccgttgtca 175
             |||||||||||||||||||||
Sbjct: 36681 gttctcctgctgccgttgtca 36701

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>gb|AC005467.1|AC005467 Drosophila melanogaster, chromosome 2R, region 48C1-48C2, P1 clone
             DS00568, complete sequence
          Length = 62091

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 155   gttctcctgctgccgttgtca 175
             |||||||||||||||||||||
Sbjct: 16826 gttctcctgctgccgttgtca 16806

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>emb|AL772160.8| Mouse DNA sequence from clone RP23-85H5 on chromosome 4, complete
             sequence
          Length = 228375

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 77    tatcatgggagacagaggaagggaa 101
             |||||||||||||||||| ||||||
Sbjct: 64502 tatcatgggagacagagggagggaa 64526

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>gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosome 7, complete sequence
          Length = 189323

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    atgggagacagaggaagggaaagg 104
             ||||||||||||||||||| ||||
Sbjct: 17104 atgggagacagaggaaggggaagg 17081

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>gb|AC119877.9| Mus musculus chromosome 3, clone RP24-324H23, complete sequence
          Length = 155784

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    agaggaagggaaaggcagga 109
             ||||||||||||||||||||
Sbjct: 25419 agaggaagggaaaggcagga 25400

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>gb|AC186367.2| Gallus gallus BAC clone TAM31-55N19 from chromosome 17, complete sequence
          Length = 181509

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     agaggaagggaaaggcagga 109
              ||||||||||||||||||||
Sbjct: 117668 agaggaagggaaaggcagga 117687

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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     ggctcccgtggctttgactc 238
               ||||||||||||||||||||
Sbjct: 6235493 ggctcccgtggctttgactc 6235512

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>gb|AC133602.3| Mus musculus BAC clone RP24-255I9 from chromosome 15, complete sequence
          Length = 155411

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 77     tatcatgggagacagaggaaggga 100
              ||||||||||| ||||||||||||
Sbjct: 140926 tatcatgggaggcagaggaaggga 140903

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>gb|AC127545.4| Mus musculus BAC clone RP24-562H22 from chromosome 19, complete sequence
          Length = 146015

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     gacagaggaagggaaaggca 106
              ||||||||||||||||||||
Sbjct: 145227 gacagaggaagggaaaggca 145208

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>gb|AC123857.4| Mus musculus BAC clone RP23-344L21 from chromosome 13, complete
             sequence
          Length = 192371

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    gggagacagaggaagggaaa 102
             ||||||||||||||||||||
Sbjct: 65081 gggagacagaggaagggaaa 65100

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>gb|AC122520.2| Mus musculus BAC clone RP24-470M22 from 6, complete sequence
          Length = 153520

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    tatcatgggagacagaggaaggga 100
             ||||||||||| ||||||||||||
Sbjct: 77958 tatcatgggagtcagaggaaggga 77981

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>gb|AC111140.11| Mus musculus chromosome 3, clone RP23-369L16, complete sequence
          Length = 236182

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    agaggaagggaaaggcagga 109
             ||||||||||||||||||||
Sbjct: 18388 agaggaagggaaaggcagga 18407

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>gb|AC102604.13| Mus musculus chromosome 19, clone RP23-385L22, complete sequence
          Length = 212387

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     gacagaggaagggaaaggca 106
              ||||||||||||||||||||
Sbjct: 163958 gacagaggaagggaaaggca 163977

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>emb|AL672032.6| Human DNA sequence from clone RP11-308B5 on chromosome X Contains a novel
              gene, the 5' end of the PLAC1 gene for placenta-specific 1,
              a ribosomal protein L21 (RPL21) pseudogene, a ribosomal
              protein S7 (RPS7) pseudogene and the 3' end of the
              LOC169090 gene, complete sequence
          Length = 209317

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 86     agacagaggaagggaaaggcagga 109
              |||||||||||| |||||||||||
Sbjct: 122843 agacagaggaagtgaaaggcagga 122866

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>emb|AL603783.14| Human DNA sequence from clone RP11-216B13 on chromosome 6 Contains two
             CpG islands, complete sequence
          Length = 94482

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   cgtggctttgactcagcctt 244
             ||||||||||||||||||||
Sbjct: 74896 cgtggctttgactcagcctt 74915

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>emb|AL390205.17| Human DNA sequence from clone RP11-15H7 on chromosome 6 Contains an ATP
             synthase H+ transporting mitochondrial F0 complex subunit
             b variant 1 (ATP5F1) pseudogene and a thyroid hormone
             receptor interactor 4 (TRIP4) pseudogene, complete
             sequence
          Length = 155680

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    agaggaagggaaaggcagga 109
             ||||||||||||||||||||
Sbjct: 42852 agaggaagggaaaggcagga 42833

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>ref|XM_784164.1| PREDICTED: Strongylocentrotus purpuratus similar to Glutamate
           dehydrogenase 1, mitochondrial precursor (GDH) (Memory
           related protein-2) (MRG-2) (LOC584300), partial mRNA
          Length = 1443

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 tcttgatgccgcccttggcg 263
           ||||||||||||||||||||
Sbjct: 445 tcttgatgccgcccttggcg 426

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>ref|XM_783415.1| PREDICTED: Strongylocentrotus purpuratus similar to glutamate
           dehydrogenase 1 (LOC583508), mRNA
          Length = 1260

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 244 tcttgatgccgcccttggcg 263
           ||||||||||||||||||||
Sbjct: 253 tcttgatgccgcccttggcg 234

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>emb|AL645846.12| Mouse DNA sequence from clone RP23-244C22 on chromosome 11 Contains a
             novel gene, the Tob1 gene for transducer of ErbB-2.1, the
             gene for a novel protein (AY100450) (WFIKKN-like growth
             and differentiation factor-associated serum protein 1)
             (Gasp1), a novel gene, the gene for a novel protein
             (3300001P08Rik) (Luc7a) and one CpG island, complete
             sequence
          Length = 188962

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 82    tgggagacagaggaagggaaaggc 105
             |||||||||||||||||| |||||
Sbjct: 63920 tgggagacagaggaaggggaaggc 63943

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>gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome 13, complete sequence
          Length = 193176

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 82     tgggagacagaggaagggaa 101
              ||||||||||||||||||||
Sbjct: 154836 tgggagacagaggaagggaa 154855

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>gb|AC151734.3| Mus musculus BAC clone RP23-22O15 from chromosome 15, complete sequence
          Length = 229862

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 77    tatcatgggagacagaggaaggga 100
             ||||||||||| ||||||||||||
Sbjct: 99971 tatcatgggaggcagaggaaggga 99948

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>gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, complete sequence
          Length = 185980

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 162 tgctgccgttgtcagttttt 181
           ||||||||||||||||||||
Sbjct: 385 tgctgccgttgtcagttttt 366

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>dbj|AP003380.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0497A05
          Length = 130919

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 81   atgggagacagaggaaggga 100
            ||||||||||||||||||||
Sbjct: 2444 atgggagacagaggaaggga 2425

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>gb|AF331848.1| Mus musculus trophinin gene, complete cds
          Length = 16270

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   tcttgaccctcttcttaggc 221
             ||||||||||||||||||||
Sbjct: 15653 tcttgaccctcttcttaggc 15672

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>gb|AC002091.2| Homo sapiens chromosome 17, clone CTB-41I6, complete sequence
          Length = 161816

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 162    tgctgccgttgtcagttttt 181
              ||||||||||||||||||||
Sbjct: 115539 tgctgccgttgtcagttttt 115520

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>gb|AC163646.2| Mus musculus BAC clone RP23-207D1 from chromosome 14, complete sequence
          Length = 185289

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 78    atcatgggagacagaggaagggaa 101
             ||||||||||||||||||| ||||
Sbjct: 12660 atcatgggagacagaggaaaggaa 12683

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>dbj|AK020404.1| Mus musculus 12 days embryo embryonic body between diaphragm region
           and neck cDNA, RIKEN full-length enriched library,
           clone:9430004J15 product:unclassifiable, full insert
           sequence
          Length = 944

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 328 gctccttggcctgcccttca 347
           ||||||||||||||||||||
Sbjct: 325 gctccttggcctgcccttca 306

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>gb|AC159632.2| Mus musculus BAC clone RP24-161A16 from chromosome 12, complete sequence
          Length = 181229

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     tatcatgggagacagaggaaggga 100
              ||||||||||| ||||||||||||
Sbjct: 112147 tatcatgggaggcagaggaaggga 112170

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>gb|AC010917.16|AC010917 Drosophila melanogaster, chromosome X, region 19E-19E, BAC clone
             BACR28L06, complete sequence
          Length = 174820

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   tgtcagttttttgctgctgc 190
             ||||||||||||||||||||
Sbjct: 43972 tgtcagttttttgctgctgc 43953

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>gb|AC011706.14|AC011706 Drosophila melanogaster, chromosome X, region 19E-19E, BAC clone
           BACR03J18, complete sequence
          Length = 161614

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 171 tgtcagttttttgctgctgc 190
           ||||||||||||||||||||
Sbjct: 843 tgtcagttttttgctgctgc 824

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>gb|AC154249.2| Mus musculus BAC clone RP24-188L2 from chromosome 14, complete sequence
          Length = 149132

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     tcatgggagacagaggaagg 98
              ||||||||||||||||||||
Sbjct: 129783 tcatgggagacagaggaagg 129802

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>gb|AF282508.2|AF282508 Homo sapiens clone 2ptel_c12t3 sequence
          Length = 766

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 87  gacagaggaagggaaaggca 106
           ||||||||||||||||||||
Sbjct: 686 gacagaggaagggaaaggca 667

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>gb|AC079779.7| Homo sapiens BAC clone RP11-356M6 from 2, complete sequence
          Length = 155399

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    gacagaggaagggaaaggca 106
             ||||||||||||||||||||
Sbjct: 81614 gacagaggaagggaaaggca 81595

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 244     tcttgatgccgcccttggcg 263
               ||||||||||||||||||||
Sbjct: 2024382 tcttgatgccgcccttggcg 2024363

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>dbj|AP006531.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1417F08
          Length = 155536

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    atgggagacagaggaaggga 100
             ||||||||||||||||||||
Sbjct: 23016 atgggagacagaggaaggga 22997

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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 219     ggctcccgtggctttgactc 238
               ||||||||||||||||||||
Sbjct: 3980183 ggctcccgtggctttgactc 3980202

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>gb|BC087832.1| Mus musculus C1q and tumor necrosis factor related protein 4, mRNA
            (cDNA clone IMAGE:30537512), with apparent retained
            intron
          Length = 4697

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 328  gctccttggcctgcccttca 347
            ||||||||||||||||||||
Sbjct: 2600 gctccttggcctgcccttca 2581

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>emb|AL672150.19| Mouse DNA sequence from clone RP23-338A17 on chromosome X, complete
             sequence
          Length = 196140

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   tcttgaccctcttcttaggc 221
             ||||||||||||||||||||
Sbjct: 94001 tcttgaccctcttcttaggc 93982

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>gb|AE003570.4| Drosophila melanogaster chromosome X, section 69 of 74 of the complete
              sequence
          Length = 300051

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    tgtcagttttttgctgctgc 190
              ||||||||||||||||||||
Sbjct: 105208 tgtcagttttttgctgctgc 105189

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>gb|AF042276.1|AF042276 Pseudomonas putida o251 homolog, poly(hydroxyalcanoate) granule
            associated protein GA1 (GA1), and poly(hydroxyalcanoate)
            granule associated protein GA2 (GA2) genes, complete cds;
            poly(hydroxyalkanoate) synthase (phaC2) gene, partial
            cds; and unknown genes
          Length = 5054

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 257  cttggcggctgctggcttgg 276
            ||||||||||||||||||||
Sbjct: 2589 cttggcggctgctggcttgg 2570

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>gb|AC123702.11| Mus musculus chromosome 19, clone RP23-341D12, complete sequence
          Length = 154959

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 84    ggagacagaggaagggaaaggcag 107
             ||||||||||||||| ||||||||
Sbjct: 18707 ggagacagaggaaggcaaaggcag 18684

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>gb|U25847.1|HSACP1S1 Human red cell-type low molecular weight acid phosphatase (ACP1)
            gene, 5' flanking region and exons 1-4
          Length = 10191

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 87   gacagaggaagggaaaggca 106
            ||||||||||||||||||||
Sbjct: 7905 gacagaggaagggaaaggca 7886

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>gb|AC167242.4| Mus musculus BAC clone RP24-354I16 from chromosome 7, complete sequence
          Length = 202422

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    atgggagacagaggaagggaaagg 104
             ||||||||||||||||||| ||||
Sbjct: 52338 atgggagacagaggaaggggaagg 52361

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>emb|CT030241.6| Mouse DNA sequence from clone RP23-377I11 on chromosome 12, complete
            sequence
          Length = 216916

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 77   tatcatgggagacagaggaaggga 100
            ||||||||||| ||||||||||||
Sbjct: 3818 tatcatgggaggcagaggaaggga 3795

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>emb|AL672241.6| Mouse DNA sequence from clone RP23-147D3 on chromosome 2, complete
             sequence
          Length = 197925

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   gctccttggcctgcccttca 347
             ||||||||||||||||||||
Sbjct: 36502 gctccttggcctgcccttca 36483

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>emb|AL683888.10| Mouse DNA sequence from clone RP23-462C12 on chromosome X, complete
              sequence
          Length = 200089

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     atcatgggagacagaggaagggaa 101
              ||||||||||| ||||||||||||
Sbjct: 190259 atcatgggagatagaggaagggaa 190282

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>emb|AL844895.6| Mouse DNA sequence from clone RP23-359N12 on chromosome 2, complete
              sequence
          Length = 210427

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     atcatgggagacagaggaagggaa 101
              ||||| ||||||||||||||||||
Sbjct: 186369 atcatcggagacagaggaagggaa 186392


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,521,118
Number of Sequences: 3902068
Number of extensions: 4521118
Number of successful extensions: 86716
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86504
Number of HSP's gapped (non-prelim): 212
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result