ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags16b18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural prote... 31 4.1
2ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural pro... 31 4.1
3ERC2_HUMAN (O15083) ERC protein 2 31 4.1

>ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural protein 1)|
           (CAST1) (Cast) (Cytomatrix protein p110)
          Length = 957

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 419 KELKETRKD*QEHCSQAQ-H*HRVFEICLEATNERRINNEKILELKNYT*RHV 264
           K+L +     ++ C +AQ    R+ EI  E  NE+   ++KI EL++ T RH+
Sbjct: 706 KQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTLRHM 758



to top

>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1)|
           (CAST1)
          Length = 957

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 419 KELKETRKD*QEHCSQAQ-H*HRVFEICLEATNERRINNEKILELKNYT*RHV 264
           K+L +     ++ C +AQ    R+ EI  E  NE+   ++KI EL++ T RH+
Sbjct: 706 KQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTLRHM 758



to top

>ERC2_HUMAN (O15083) ERC protein 2|
          Length = 957

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 419 KELKETRKD*QEHCSQAQ-H*HRVFEICLEATNERRINNEKILELKNYT*RHV 264
           K+L +     ++ C +AQ    R+ EI  E  NE+   ++KI EL++ T RH+
Sbjct: 706 KQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTLRHM 758


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,410,479
Number of Sequences: 219361
Number of extensions: 1176404
Number of successful extensions: 2476
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2475
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6825954960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top