ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16b18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC123933.4| Mus musculus BAC clone RP23-339F7 from chromosome 2, complete sequence Length = 201267 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Plus Query: 91 ctggattttgttgattttgatgtt 114 |||||||||||||||||||||||| Sbjct: 27551 ctggattttgttgattttgatgtt 27574
>emb|AL583836.18| Human DNA sequence from clone RP11-466J14 on chromosome 10 Contains the CYP2C18 gene for cytochrome P450 family 2 subfamily C polypeptide 18, a pseudogene similar to part of NADH dehydrogenase 4 (MTND4) and the 5' end of the CYP2C19 gene for cytochrome P450 family 2 subfamily C polypeptide 19, complete sequence Length = 115177 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Plus Query: 95 attttgttgattttgatgttattg 118 |||||||||||||||||||||||| Sbjct: 25137 attttgttgattttgatgttattg 25160
>emb|AL928991.9| Mouse DNA sequence from clone RP23-455F5 on chromosome 2, complete sequence Length = 149871 Score = 48.1 bits (24), Expect = 0.039 Identities = 24/24 (100%) Strand = Plus / Minus Query: 91 ctggattttgttgattttgatgtt 114 |||||||||||||||||||||||| Sbjct: 143788 ctggattttgttgattttgatgtt 143765
>gb|AC153371.7| Mus musculus 6 BAC RP23-304H3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206412 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 512 aattctgcttacaagacaccaat 534 ||||||||||||||||||||||| Sbjct: 62202 aattctgcttacaagacaccaat 62224
>gb|AC153991.3| Mus musculus 6 BAC RP24-541D10 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 202289 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 512 aattctgcttacaagacaccaat 534 ||||||||||||||||||||||| Sbjct: 161954 aattctgcttacaagacaccaat 161976
>gb|AC164110.4| Mus musculus BAC clone RP23-307N19 from chromosome 12, complete sequence Length = 201050 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 659 aatgaaaataggagttttataa 680 |||||||||||||||||||||| Sbjct: 105046 aatgaaaataggagttttataa 105067
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome Length = 5237682 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 464 gaaccaaaagttgaaaacattg 485 |||||||||||||||||||||| Sbjct: 725871 gaaccaaaagttgaaaacattg 725892
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 464 gaaccaaaagttgaaaacattg 485 |||||||||||||||||||||| Sbjct: 734981 gaaccaaaagttgaaaacattg 735002
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 464 gaaccaaaagttgaaaacattg 485 |||||||||||||||||||||| Sbjct: 734876 gaaccaaaagttgaaaacattg 734897
>gb|AC134596.3| Mus musculus BAC clone RP23-435C1 from chromosome 12, complete sequence Length = 193068 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 659 aatgaaaataggagttttataa 680 |||||||||||||||||||||| Sbjct: 3185 aatgaaaataggagttttataa 3164
>gb|AC111091.8| Mus musculus chromosome 3, clone RP23-165D1, complete sequence Length = 188735 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 594 aacctaagcaggaagaaaagaa 615 |||||||||||||||||||||| Sbjct: 109494 aacctaagcaggaagaaaagaa 109515
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 464 gaaccaaaagttgaaaacattg 485 |||||||||||||||||||||| Sbjct: 724885 gaaccaaaagttgaaaacattg 724906
>emb|CR848664.5| Zebrafish DNA sequence from clone CH211-169I9 in linkage group 15, complete sequence Length = 139504 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 594 aacctaagcaggaagaaaagaa 615 |||||||||||||||||||||| Sbjct: 6204 aacctaagcaggaagaaaagaa 6225
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 464 gaaccaaaagttgaaaacattg 485 |||||||||||||||||||||| Sbjct: 734980 gaaccaaaagttgaaaacattg 735001
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 464 gaaccaaaagttgaaaacattg 485 |||||||||||||||||||||| Sbjct: 811576 gaaccaaaagttgaaaacattg 811597
>gb|AE014827.1| Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence Length = 254436 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 attttttcattgtttattctt 318 ||||||||||||||||||||| Sbjct: 86607 attttttcattgtttattctt 86587
>gb|AC136730.9| Mus musculus chromosome 19, clone RP23-76E22, complete sequence Length = 146616 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 attttgttgattttgatgttattga 119 ||||||||| ||||||||||||||| Sbjct: 78701 attttgttgtttttgatgttattga 78677
>gb|AC119905.11| Mus musculus chromosome 17, clone RP24-238N14, complete sequence Length = 179042 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 477 aaaacattgttgatgttaagaacaa 501 |||||||||||||| |||||||||| Sbjct: 98449 aaaacattgttgatattaagaacaa 98473
>gb|AC165233.6| Mus musculus chromosome 8, clone RP23-307O2, complete sequence Length = 158925 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 tgattttgatgttattgagaa 122 ||||||||||||||||||||| Sbjct: 70482 tgattttgatgttattgagaa 70502
>gb|AY518540.1| Homo sapiens CDC5 cell division cycle 5-like (S. pombe) (CDC5L) gene, complete cds Length = 63393 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 81 aatcatttatctggattttgttgattttgatgt 113 |||||||| ||| |||||||| ||||||||||| Sbjct: 42709 aatcatttctcttgattttgtagattttgatgt 42741
>gb|AC163221.4| Mus musculus chromosome 19, clone RP23-376A6, complete sequence Length = 188740 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 attttgttgattttgatgttattga 119 ||||||||| ||||||||||||||| Sbjct: 143197 attttgttgtttttgatgttattga 143173
>emb|AL513549.13| Human DNA sequence from clone RP11-424H23 on chromosome 6 Contains part of a novel gene (FLJ20342), complete sequence Length = 131374 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 641 aatttttcaactggaatgaat 661 ||||||||||||||||||||| Sbjct: 14048 aatttttcaactggaatgaat 14028
>emb|AL449104.5| Human DNA sequence from clone RP1-173P22 on chromosome 6 Contains the 3' end of the HCRTR2 gene for hypocretin (orexin) receptor 2, complete sequence Length = 120466 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 599 aagcaggaagaaaagaatcgatcacctccaagt 631 |||||||||||||| ||| ||||||||||||| Sbjct: 48710 aagcaggaagaaaaaaatgcatcacctccaagt 48678
>emb|AL354871.12| Human DNA sequence from clone RP11-66G15 on chromosome 13, complete sequence Length = 96159 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 ttttgatgttattgagaatca 125 ||||||||||||||||||||| Sbjct: 25206 ttttgatgttattgagaatca 25186
>emb|AL138882.8| Human DNA sequence from clone RP1-195K21 on chromosome 6 Contains part of the KHDRBS2 gene for KH domain containing RNA binding signal transduction associated protein 2, complete sequence Length = 75512 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 tgagtctaagaaagcatttggaatt 237 ||||||||||| ||||||||||||| Sbjct: 67018 tgagtctaagacagcatttggaatt 66994
>emb|AL136091.6| Human DNA sequence from clone RP1-80E10 on chromosome 6 Contains the 3' end of a ribosomal protein S15a (RPS15A) pseudogene, complete sequence Length = 16242 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 281 agttttttagctccagtattttttc 305 ||||||| ||||||||||||||||| Sbjct: 4939 agtttttcagctccagtattttttc 4963
>emb|AL133262.8| Human DNA sequence from clone RP1-319D22 on chromosome 6 Contains the 3' end of a novel gene (possible ortholog of rodent CDC5-like protein), complete sequence Length = 86372 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 81 aatcatttatctggattttgttgattttgatgt 113 |||||||| ||| |||||||| ||||||||||| Sbjct: 5837 aatcatttctcttgattttgtagattttgatgt 5869
>gb|AC023831.9| Homo sapiens chromosome 16 clone RP11-74E23, complete sequence Length = 174007 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 295 agtattttttcattgtttattcttc 319 |||||||||||||||| |||||||| Sbjct: 105377 agtattttttcattgtctattcttc 105401
>gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, complete sequence Length = 214250 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 425 gaggttcgtgtggaagaaact 445 ||||||||||||||||||||| Sbjct: 168787 gaggttcgtgtggaagaaact 168807
>gb|AY062031.1| Homo sapiens hypocretin receptor 2 (HCRTR2) gene, complete cds Length = 168575 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 599 aagcaggaagaaaagaatcgatcacctccaagt 631 |||||||||||||| ||| ||||||||||||| Sbjct: 83306 aagcaggaagaaaaaaatgcatcacctccaagt 83274
>gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155413 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 213 tgagtctaagaaagcatttggaatt 237 ||||||||||| ||||||||||||| Sbjct: 112276 tgagtctaagacagcatttggaatt 112252
>ref|XM_688948.1| PREDICTED: Danio rerio collagen, type IV, alpha 5 (col4a5), mRNA Length = 4876 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 470 aaagttgaaaacattgttgatgtta 494 ||||||| ||||||||||||||||| Sbjct: 3648 aaagttgcaaacattgttgatgtta 3624
>ref|XM_626936.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd3_3900), partial mRNA Length = 3024 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 115 attgagaatcatcaatcaatt 135 ||||||||||||||||||||| Sbjct: 727 attgagaatcatcaatcaatt 747
>emb|BX248117.9| Zebrafish DNA sequence from clone CH211-226D5, complete sequence Length = 181542 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 656 atgaatgaaaataggagttttataa 680 ||||||||||||||||||| ||||| Sbjct: 102769 atgaatgaaaataggagttatataa 102745
>gb|AC009133.7| Homo sapiens chromosome 16 clone RP11-504I2, complete sequence Length = 174363 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 295 agtattttttcattgtttattcttc 319 |||||||||||||||| |||||||| Sbjct: 164784 agtattttttcattgtctattcttc 164808
>dbj|AB028622.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MZN24 Length = 82348 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 467 ccaaaagttgaaaacattgtt 487 ||||||||||||||||||||| Sbjct: 38044 ccaaaagttgaaaacattgtt 38024
>emb|BX664610.10| Zebrafish DNA sequence from clone DKEY-11N6 in linkage group 22, complete sequence Length = 206964 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 agtattttttcattgtttatt 315 ||||||||||||||||||||| Sbjct: 127317 agtattttttcattgtttatt 127337
>gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete sequence Length = 177471 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 213 tgagtctaagaaagcatttggaatt 237 ||||||||||| ||||||||||||| Sbjct: 32957 tgagtctaagacagcatttggaatt 32981
>emb|AL935294.6| Zebrafish DNA sequence from clone CH211-239I4, complete sequence Length = 168302 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 656 atgaatgaaaataggagttttataa 680 ||||||||||||||||||| ||||| Sbjct: 102530 atgaatgaaaataggagttatataa 102554
>ref|XM_639864.1| Dictyostelium discoideum hypothetical protein (DDB0201560), partial mRNA Length = 1173 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 tgttgattttgatgttattg 118 |||||||||||||||||||| Sbjct: 597 tgttgattttgatgttattg 578
>gb|AC151731.4| Mus musculus BAC clone RP23-401H13 from chromosome 9, complete sequence Length = 193536 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 471 aagttgaaaacattgttgatgtta 494 ||||||||||||||||| |||||| Sbjct: 167825 aagttgaaaacattgtttatgtta 167802
>ref|NM_001002979.1| Canis familiaris collagen, type IV, alpha 5 (Alport syndrome) (COL4A5), mRNA Length = 5681 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 470 aaagttgaaaacattgttgatgtt 493 ||||||| |||||||||||||||| Sbjct: 4781 aaagttgcaaacattgttgatgtt 4758
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 99 tgttgattttgatgttattgagaa 122 |||||||||||||| ||||||||| Sbjct: 2355748 tgttgattttgatgctattgagaa 2355725
>gb|AF074021.1| Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence Length = 103632 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 attttgttgattttgatgtt 114 |||||||||||||||||||| Sbjct: 101759 attttgttgattttgatgtt 101740
>gb|AC150888.5| Bos taurus BAC CH240-475A10 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 186059 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 acatatattctcttgatcaa 580 |||||||||||||||||||| Sbjct: 57691 acatatattctcttgatcaa 57672
>gb|AC115145.5| Rattus norvegicus 1 BAC CH230-201L12 (Children's Hospital Oakland Research Institute) complete sequence Length = 129506 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ttttttcattgtttattctt 318 |||||||||||||||||||| Sbjct: 40093 ttttttcattgtttattctt 40112
>ref|XM_610590.2| PREDICTED: Bos taurus similar to Exosome complex exonuclease RRP43 (Ribosomal RNA processing protein 43) (Exosome component 8) (p9) (Opa-interacting protein 2) (LOC532080), partial mRNA Length = 629 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gtttctttcagttccttatgtgga 426 |||||||||||||||| ||||||| Sbjct: 128 gtttctttcagttcctaatgtgga 151
>gb|AC113176.8| Mus musculus chromosome 3, clone RP23-453A2, complete sequence Length = 217606 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 ctcatgagaatttttcaact 652 |||||||||||||||||||| Sbjct: 64452 ctcatgagaatttttcaact 64471
>gb|AF470624.2| Canis familiaris type IV collagen alpha 5 (COL4A5) mRNA, complete cds Length = 5681 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 470 aaagttgaaaacattgttgatgtt 493 ||||||| |||||||||||||||| Sbjct: 4781 aaagttgcaaacattgttgatgtt 4758
>gb|AC110038.25| Mus musculus chromosome 1, clone RP23-258M15, complete sequence Length = 232830 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 tccttcagttttgaacatat 566 |||||||||||||||||||| Sbjct: 142319 tccttcagttttgaacatat 142338
>gb|AC121290.6| Mus musculus chromosome 16, clone RP23-84N4, complete sequence Length = 241184 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tctggattttgttgattttg 109 |||||||||||||||||||| Sbjct: 31550 tctggattttgttgattttg 31569
>gb|AC099735.47| Mus musculus chromosome 1, clone RP23-218I9, complete sequence Length = 207768 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 547 tccttcagttttgaacatat 566 |||||||||||||||||||| Sbjct: 11974 tccttcagttttgaacatat 11993
>gb|AC140373.2| Mus musculus BAC clone RP23-197O10 from chromosome 15, complete sequence Length = 215314 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 ttttgttgattttgatgttattga 119 |||||||||||||| ||||||||| Sbjct: 89301 ttttgttgattttgttgttattga 89278
>gb|AY208849.1| Dictyostelium discoideum putative FHA-HIT mRNA, complete cds Length = 1318 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 tgttgattttgatgttattg 118 |||||||||||||||||||| Sbjct: 642 tgttgattttgatgttattg 623
>gb|AC148217.15| Medicago truncatula clone mth2-20c19, complete sequence Length = 113210 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 tggattttgttgattttgat 111 |||||||||||||||||||| Sbjct: 54416 tggattttgttgattttgat 54435
>emb|AL593844.4| Human DNA sequence from clone RP11-406O16 on chromosome 6 Contains the 3' part of a novel gene, complete sequence Length = 157929 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 ttttgttgattttgatgttattga 119 ||||||||||||||||| |||||| Sbjct: 101626 ttttgttgattttgatgctattga 101603
>emb|AL590381.4| Human DNA sequence from clone RP11-373O10 on chromosome 9, complete sequence Length = 182430 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 649 aactggaatgaatgaaaata 668 |||||||||||||||||||| Sbjct: 56399 aactggaatgaatgaaaata 56380
>emb|AL450312.10| Human DNA sequence from clone RP11-138L24 on chromosome 9, complete sequence Length = 164559 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 tttgttgattttgatgttat 116 |||||||||||||||||||| Sbjct: 64291 tttgttgattttgatgttat 64272
>emb|AL353756.5| Human DNA sequence from clone RP11-415D9 on chromosome 9, complete sequence Length = 146155 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ttttgttgattttgatgttattga 119 |||||||||| ||||||||||||| Sbjct: 80945 ttttgttgatgttgatgttattga 80968
>emb|AL138706.9| Human DNA sequence from clone RP11-421P11 on chromosome 13 Contains the MADH9 gene for MAD (mothers against decapentaplegic homolog 9 (Drosophila), the gene for dolichyl-phosphate beta-glucosyltransferase (ALG5), the gene for Opa-interacting protein 2 (OIP2), the 3' end of the gene for transcription factor (p38 interacting protein) (P38IP)part of as novel gene, a RPL29 pseudogene, a MAP2K1IP1 pseudogene and a CpG island, complete sequence Length = 195032 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 gtttctttcagttccttatgtgga 426 |||||||||||||||| ||||||| Sbjct: 162953 gtttctttcagttcctaatgtgga 162976
>emb|AL049696.9|HSJ279A18 Human DNA sequence from clone RP1-279A18 on chromosome 6q13-15 Contains the 3' part of the BCKDHB gene for branched chain keto acid dehydrogenase E1, beta polypeptide (maple syrup urine disease), complete sequence Length = 142707 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ttttttcattgtttattctt 318 |||||||||||||||||||| Sbjct: 77236 ttttttcattgtttattctt 77217
>gb|AC158972.4| Mus musculus chromosome 15, clone RP24-225M16, complete sequence Length = 163900 Score = 40.1 bits (20), Expect = 9.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 547 tccttcagttttgaacatatattctctt 574 |||||||||||| | ||||||||||||| Sbjct: 90533 tccttcagttttaagcatatattctctt 90506
>emb|AL034452.8|HS682J15 Human DNA sequence from clone RP4-682J15 on chromosome 6p11.2-12.3 Contains the 3' end of the COL21A1 gene for collagen, type XXI, alpha 1 (collagen XXI, collagen, type XX, alpha 1, COLA1L, COL20A1, DKFZp564B052), complete sequence Length = 118431 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 637 tgagaatttttcaactggaa 656 |||||||||||||||||||| Sbjct: 108171 tgagaatttttcaactggaa 108152
>gb|AC159969.4| Mus musculus chromosome 3, clone RP23-301F20, complete sequence Length = 187487 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 633 ctcatgagaatttttcaact 652 |||||||||||||||||||| Sbjct: 96761 ctcatgagaatttttcaact 96742
>gb|AC116544.1| Homo sapiens 3 BAC RP11-21M4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 112189 Score = 40.1 bits (20), Expect = 9.4 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 652 tggaatgaatga-aaataggagttttat 678 |||||||||||| ||||||||||||||| Sbjct: 106338 tggaatgaatgataaataggagttttat 106365
>emb|Z99110.2|BSUB0007 Bacillus subtilis complete genome (section 7 of 21): from 1209742 to 1410982 Length = 201241 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 600 agcaggaagaaaagaatcgatcac 623 |||||||||||| ||||||||||| Sbjct: 114516 agcaggaagaaatgaatcgatcac 114539
>emb|Z70177.1|BSPBSXSE B.subtilis DNA (28 kb PBSX/skin element region) Length = 28000 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 600 agcaggaagaaaagaatcgatcac 623 |||||||||||| ||||||||||| Sbjct: 4077 agcaggaagaaatgaatcgatcac 4100
>emb|Z34287.1|BSGENDNA B.subtilis (SO113) genomic DNA (5425bp) Length = 5245 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 600 agcaggaagaaaagaatcgatcac 623 |||||||||||| ||||||||||| Sbjct: 4078 agcaggaagaaatgaatcgatcac 4101
>gb|AC162867.5| Mus musculus chromosome 8, clone RP24-363D7, complete sequence Length = 187070 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 302 tttcattgtttattcttctttcat 325 ||||||| |||||||||||||||| Sbjct: 175638 tttcattttttattcttctttcat 175615
>gb|AC162519.4| Mus musculus chromosome 8, clone RP24-146M21, complete sequence Length = 150115 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 302 tttcattgtttattcttctttcat 325 ||||||| |||||||||||||||| Sbjct: 148112 tttcattttttattcttctttcat 148135
>emb|AL831789.6| Zebrafish DNA sequence from clone CH211-207O21 in linkage group 14 Contains the zebrafish fgf24 gene for fibroblast growth factor 24, a novel gene for a RING finger protein, the lbx1h gene for lady bird-like homeobox 1 homolog, (Drosophila) and eight CpG islands, complete sequence Length = 217649 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 657 tgaatgaaaataggagttttataa 680 |||||||||||||||||| ||||| Sbjct: 11293 tgaatgaaaataggagttatataa 11316
>emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13 Length = 200001 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 attttgttgattttgatgtt 114 |||||||||||||||||||| Sbjct: 68430 attttgttgattttgatgtt 68411
>gb|AF054982.1| Caenorhabditis briggsae putative PP2C protein phosphatase FEM-2 (fem-2) gene, complete cds Length = 3766 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 660 atgaaaataggagttttata 679 |||||||||||||||||||| Sbjct: 2426 atgaaaataggagttttata 2445
>gb|AC109633.5| Homo sapiens chromosome 8, clone CTD-2024D23, complete sequence Length = 134242 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 taactcatattaagaatgat 177 |||||||||||||||||||| Sbjct: 12721 taactcatattaagaatgat 12702
>gb|AF411809.1| Lycopersicon esculentum BAC clone FW2.2, complete sequence Length = 127892 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 tttcattgtttattcttctt 321 |||||||||||||||||||| Sbjct: 94374 tttcattgtttattcttctt 94355
>gb|AC105917.5| Homo sapiens BAC clone RP11-395C17 from 4, complete sequence Length = 191323 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 ttttgttgattttgatgttattga 119 |||||||||| ||||||||||||| Sbjct: 70319 ttttgttgatgttgatgttattga 70296
>gb|AC008492.3| Homo sapiens chromosome 5 clone CTC-427F23, complete sequence Length = 138127 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 tttattcttctttcatttgtagct 333 |||| ||||||||||||||||||| Sbjct: 66015 tttaatcttctttcatttgtagct 65992
>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene, complete cds, alternatively spliced Length = 381696 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 637 tgagaatttttcaactggaa 656 |||||||||||||||||||| Sbjct: 337996 tgagaatttttcaactggaa 338015
>gb|AC097067.3| Homo sapiens BAC clone RP11-558N14 from 4, complete sequence Length = 136500 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ttgtttattcttctttcatt 326 |||||||||||||||||||| Sbjct: 113069 ttgtttattcttctttcatt 113088
>gb|AC011196.7| Homo sapiens chromosome , clone RP11-48J4, complete sequence Length = 144138 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 654 gaatgaatgaaaataggagt 673 |||||||||||||||||||| Sbjct: 16731 gaatgaatgaaaataggagt 16750
>gb|AC008621.8| Homo sapiens chromosome 5 clone CTB-147K10, complete sequence Length = 67086 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 tttattcttctttcatttgtagct 333 |||| ||||||||||||||||||| Sbjct: 39526 tttaatcttctttcatttgtagct 39503
>gb|AC157661.2| Mus musculus BAC clone RP23-233F23 from chromosome 3, complete sequence Length = 195603 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 gattttgttgattttgatgttatt 117 |||||||||||||| ||||||||| Sbjct: 118777 gattttgttgatttagatgttatt 118800
>gb|AC022603.5|AC022603 Homo sapiens chromosome 15, clone RP11-20B10, complete sequence Length = 153223 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 654 gaatgaatgaaaataggagt 673 |||||||||||||||||||| Sbjct: 141744 gaatgaatgaaaataggagt 141763
>gb|AC008486.6|AC008486 Homo sapiens chromosome 5 clone CTC-421B9, complete sequence Length = 124124 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 310 tttattcttctttcatttgtagct 333 |||| ||||||||||||||||||| Sbjct: 5157 tttaatcttctttcatttgtagct 5180
>gb|AC063979.4|AC063979 Homo sapiens chromosome 5 clone RP11-474H20, complete sequence Length = 173660 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 597 ctaagcaggaagaaaagaat 616 |||||||||||||||||||| Sbjct: 56827 ctaagcaggaagaaaagaat 56846
>ref|XM_624733.1| PREDICTED: Apis mellifera similar to ENSANGP00000017682 (LOC552357), mRNA Length = 1722 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 aaccaaaagttgaaaacatt 484 |||||||||||||||||||| Sbjct: 656 aaccaaaagttgaaaacatt 637
>gb|AC090883.1|AC090883 Homo sapiens chromosome 3 clone RP11-117G9 map 3p, complete sequence Length = 172400 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 gttcgtccttcagttttgaa 561 |||||||||||||||||||| Sbjct: 108751 gttcgtccttcagttttgaa 108770
>gb|AC068660.3|AC068660 Homo sapiens chromosome 5 clone CTC-349J2, complete sequence Length = 172188 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 310 tttattcttctttcatttgtagct 333 |||| ||||||||||||||||||| Sbjct: 167925 tttaatcttctttcatttgtagct 167902
>gb|AC069137.6| Homo sapiens BAC clone RP11-750D14 from 2, complete sequence Length = 108836 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 297 tattttttcattgtttattcttct 320 |||||||| ||||||||||||||| Sbjct: 67431 tattttttaattgtttattcttct 67454
>gb|AC154545.2| Mus musculus BAC clone RP23-431G16 from chromosome 16, complete sequence Length = 202933 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tctggattttgttgattttg 109 |||||||||||||||||||| Sbjct: 202700 tctggattttgttgattttg 202719
>gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence Length = 254733 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 99 tgttgattttgatgttattg 118 |||||||||||||||||||| Sbjct: 65456 tgttgattttgatgttattg 65437
>gb|AC115682.2| Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence Length = 57538 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 299 ttttttcattgtttattcttcttt 322 |||||||||| ||||||||||||| Sbjct: 2989 ttttttcattttttattcttcttt 2966
>gb|AC084647.1|CBRG45M10 Caenorhabditis briggsae cosmid G45M10, complete sequence Length = 39742 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 660 atgaaaataggagttttata 679 |||||||||||||||||||| Sbjct: 3099 atgaaaataggagttttata 3080
>gb|AY078501.1| Canis familiaris type IV collagen alpha 5 chain (COL4A5) mRNA, partial cds Length = 5073 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 470 aaagttgaaaacattgttgatgtt 493 ||||||| |||||||||||||||| Sbjct: 4625 aaagttgcaaacattgttgatgtt 4602
>gb|AC079437.2| Rattus norvegicus strain Brown Norway chromosome 4 clone RP31-275K4, complete sequence Length = 109809 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 ttgaacatatattctcttga 576 |||||||||||||||||||| Sbjct: 59788 ttgaacatatattctcttga 59769
>ref|XM_222675.3| PREDICTED: Rattus norvegicus crumbs homolog 1 (Drosophila) (predicted) (Crb1_predicted), mRNA Length = 4236 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 attgagaatcatcaatcaat 134 |||||||||||||||||||| Sbjct: 1519 attgagaatcatcaatcaat 1538
>gb|AC083811.22| Homo sapiens 12 BAC RP11-810G6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173067 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 475 tgaaaacattgttgatgttaagaa 498 |||||||||| ||||||||||||| Sbjct: 113983 tgaaaacatttttgatgttaagaa 113960
>gb|AC027125.5| Homo sapiens chromosome 3 clone RP11-584M7 map 3p, complete sequence Length = 173842 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 gttcgtccttcagttttgaa 561 |||||||||||||||||||| Sbjct: 50232 gttcgtccttcagttttgaa 50251
>gb|AC136365.5| Homo sapiens chromosome 8, clone RP11-97P4, complete sequence Length = 143756 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 taactcatattaagaatgat 177 |||||||||||||||||||| Sbjct: 143002 taactcatattaagaatgat 142983
>gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome I, complete sequence Length = 118374 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 aatcatttatctggattttg 100 |||||||||||||||||||| Sbjct: 36428 aatcatttatctggattttg 36409
>gb|AC008843.5|AC008843 Homo sapiens chromosome 5 clone CTD-2156N14, complete sequence Length = 121063 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 597 ctaagcaggaagaaaagaat 616 |||||||||||||||||||| Sbjct: 3887 ctaagcaggaagaaaagaat 3906
>emb|CR392368.7| Zebrafish DNA sequence from clone DKEY-86E18 in linkage group 20, complete sequence Length = 87973 Score = 40.1 bits (20), Expect = 9.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 299 ttttttcattgtttattcttctttcatttgta 330 ||||||||| ||||||||| ||||||||||| Sbjct: 4192 ttttttcataatttattcttatttcatttgta 4161
>gb|AC110174.10| Mus musculus chromosome 3, clone RP23-293K21, complete sequence Length = 253469 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 547 tccttcagttttgaacatatattc 570 ||||||||||||||||||| |||| Sbjct: 5481 tccttcagttttgaacatacattc 5458
>dbj|AP001034.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-729B4, complete sequence Length = 167934 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 atcatttatctggattttgt 101 |||||||||||||||||||| Sbjct: 115740 atcatttatctggattttgt 115721
>emb|BX511083.17| Zebrafish DNA sequence from clone CH211-195F22 in linkage group 1, complete sequence Length = 211668 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 452 gaagagccagcagaaccaaaagtt 475 |||||||||||| ||||||||||| Sbjct: 31996 gaagagccagcacaaccaaaagtt 31973
>dbj|AB010875.1| Arabidopsis thaliana gene for PHR1, complete cds Length = 3980 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 aatcatttatctggattttg 100 |||||||||||||||||||| Sbjct: 3101 aatcatttatctggattttg 3120
>gb|U07888.1|CFU07888 Canis familiaris Samoyed collagen type IV A5 chain mRNA, partial cds Length = 2263 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 470 aaagttgaaaacattgttgatgtt 493 ||||||| |||||||||||||||| Sbjct: 1815 aaagttgcaaacattgttgatgtt 1792
>gb|AC102591.14| Mus musculus chromosome 3, clone RP23-336B10, complete sequence Length = 216906 Score = 40.1 bits (20), Expect = 9.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 547 tccttcagttttgaacatatattc 570 ||||||||||||||||||| |||| Sbjct: 163790 tccttcagttttgaacatacattc 163767
>emb|AL663048.12| Mouse DNA sequence from clone RP23-166N12 on chromosome X, complete sequence Length = 234817 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 actctattacatgtctttac 276 |||||||||||||||||||| Sbjct: 200472 actctattacatgtctttac 200491
>dbj|AP000945.5| Homo sapiens genomic DNA, chromosome 18p clone:RP11-870F11, complete sequences Length = 216975 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 476 gaaaacattgttgatgttaa 495 |||||||||||||||||||| Sbjct: 62816 gaaaacattgttgatgttaa 62835 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,357,570 Number of Sequences: 3902068 Number of extensions: 8357570 Number of successful extensions: 193977 Number of sequences better than 10.0: 110 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 193127 Number of HSP's gapped (non-prelim): 851 length of query: 687 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 664 effective length of database: 17,143,297,704 effective search space: 11383149675456 effective search space used: 11383149675456 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
