>RU2B_HUMAN (P08579) U2 small nuclear ribonucleoprotein B"|
          Length = 225

 Score =  110 bits (274), Expect = 3e-24
 Identities = 56/128 (43%), Positives = 72/128 (56%)
 Frame = +3

Query: 72  DVPPNQTVYFXXXXXXXXXXXXXRSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITA 251
           D+ PN T+Y              RSLYAL SQ+G +VD+VALKT K+RGQA+V F E+ +
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61

Query: 252 ATNAFRGLQDFDFYGKKMRVQYAKTKSDCFAKADGSYAPXXXXXXXXXXXXXXXXXTEDG 431
           +TNA R LQ F FYGK MR+QYAKT SD  +K  G++A                  T   
Sbjct: 62  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121

Query: 432 QQPGANAP 455
           ++PG   P
Sbjct: 122 KKPGQGTP 129

>RU2B_MOUSE (Q9CQI7) U2 small nuclear ribonucleoprotein B"|
          Length = 225

 Score =  108 bits (270), Expect = 8e-24
 Identities = 58/136 (42%), Positives = 75/136 (55%), Gaps = 1/136 (0%)
 Frame = +3

Query: 72  DVPPNQTVYFXXXXXXXXXXXXXRSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITA 251
           D+ PN T+Y              RSLYAL SQ+G +VD+VALKT K+RGQA+V F E+ +
Sbjct: 2   DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61

Query: 252 ATNAFRGLQDFDFYGKKMRVQYAKTKSDCFAKADGSYAPXXXXXXXXXXXXXXXXXTEDG 431
           +TNA R LQ F FYGK MR+QYAKT SD  +K  G++A                      
Sbjct: 62  STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAAN 121

Query: 432 QQPGANAP-VAPSNGT 476
           ++PG   P  A + GT
Sbjct: 122 KKPGQGTPNAANTQGT 137

>SNRPA_MOUSE (Q62189) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 286

 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 50/125 (40%), Positives = 67/125 (53%)
 Frame = +3

Query: 84  NQTVYFXXXXXXXXXXXXXRSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNA 263
           N T+Y              +SLYA+ SQ+G+I+D++  +  K+RGQA+V F E+T+ATNA
Sbjct: 14  NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 73

Query: 264 FRGLQDFDFYGKKMRVQYAKTKSDCFAKADGSYAPXXXXXXXXXXXXXXXXXTEDGQQPG 443
            R +Q F FY K MR+QYAKT SD  AK  G+Y                    +   Q G
Sbjct: 74  LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGG 133

Query: 444 ANAPV 458
           A APV
Sbjct: 134 AAAPV 138

>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 281

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 48/126 (38%), Positives = 68/126 (53%)
 Frame = +3

Query: 81  PNQTVYFXXXXXXXXXXXXXRSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATN 260
           PN T+Y              +SLYA+ SQ+G+I+D++  ++ K+RGQA+V F E+++ATN
Sbjct: 7   PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66

Query: 261 AFRGLQDFDFYGKKMRVQYAKTKSDCFAKADGSYAPXXXXXXXXXXXXXXXXXTEDGQQP 440
           A R +Q F FY K MR+QYAKT SD  AK  G++                   T+   Q 
Sbjct: 67  ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQG 126

Query: 441 GANAPV 458
           G   PV
Sbjct: 127 GGATPV 132

>SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1-A) (Sex determination protein snf)
          Length = 216

 Score = 92.8 bits (229), Expect = 5e-19
 Identities = 45/94 (47%), Positives = 63/94 (67%)
 Frame = +3

Query: 81  PNQTVYFXXXXXXXXXXXXXRSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATN 260
           PNQT+Y              +SLYA+ SQ+G+I+D+VALKT K+RGQA+V F EI +A+N
Sbjct: 5   PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64

Query: 261 AFRGLQDFDFYGKKMRVQYAKTKSDCFAKADGSY 362
           A R +Q F FY K M++ Y+K+ SD  AK  G++
Sbjct: 65  ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTF 98

>SNRPA_XENLA (P45429) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 282

 Score = 91.7 bits (226), Expect = 1e-18
 Identities = 43/97 (44%), Positives = 62/97 (63%)
 Frame = +3

Query: 72  DVPPNQTVYFXXXXXXXXXXXXXRSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITA 251
           +V PN T+Y              +SLYA+ SQ+G+I+D++  +  K+RGQA+V F E ++
Sbjct: 5   EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSS 64

Query: 252 ATNAFRGLQDFDFYGKKMRVQYAKTKSDCFAKADGSY 362
           ATNA R +Q F FY K MR+QY+KT SD  AK  G++
Sbjct: 65  ATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTF 101

>RU2B_SCHPO (Q7LL14) Probable U2 small nuclear ribonucleoprotein B"|
          Length = 111

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 34/63 (53%), Positives = 48/63 (76%)
 Frame = +3

Query: 144 SLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYAK 323
           +LY L S YG +VD+VALKT K+RGQA V F + +AA  A + L++F F+GK+M++QYA 
Sbjct: 23  ALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAMKALKNFIFFGKEMKIQYAH 82

Query: 324 TKS 332
           +KS
Sbjct: 83  SKS 85

>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome) (Glycoprotein
           p43)
          Length = 391

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALK---THKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRV 311
           ++L A+  +YGRIV+V+ +K   T+K RG A+V F     A +A R +      GK ++V
Sbjct: 22  KALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKV 81

Query: 312 QYAKTKS 332
           + A   S
Sbjct: 82  EQATKPS 88

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 37.0 bits (84), Expect = 0.031
 Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALK---THKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRV 311
           ++L A+  +YGRIV+++ +K   T+K RG A+V F     A +  R +      GK ++V
Sbjct: 22  KALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKV 81

Query: 312 QYAKTKS 332
           + A   S
Sbjct: 82  EQATKPS 88

>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 36.6 bits (83), Expect = 0.041
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALK---THKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRV 311
           ++L A+  +YGRIV+++ +K   T+K RG A+V       A +A R +      GK ++V
Sbjct: 22  KALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKV 81

Query: 312 QYA 320
           + A
Sbjct: 82  EQA 84

>MSL1_YEAST (P40567) U2 small nuclear ribonucleoprotein B"|
          Length = 111

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 18/63 (28%), Positives = 38/63 (60%)
 Frame = +3

Query: 144 SLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYAK 323
           +L+ L + +G ++ V ++   K RGQA++    I  A+ A   L    F+GK ++V+++K
Sbjct: 47  NLFLLFATFGEVLKV-SMNFKKQRGQAFITMRTIDQASLAQISLNGERFFGKPLKVEFSK 105

Query: 324 TKS 332
           +++
Sbjct: 106 SET 108

>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein|
           23) (RNA-binding region-containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +3

Query: 147 LYALCSQYGRIVDVVALK---THKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQY 317
           L  +   +G+I ++V +K   T + +G  ++ FS+   A  A   L  F+  G+ MRV +
Sbjct: 279 LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 338

Query: 318 AKTKSD 335
              + D
Sbjct: 339 VTERLD 344

>JSN1_YEAST (P47135) Protein JSN1 (Protein PUF1)|
          Length = 1091

 Score = 32.7 bits (73), Expect = 0.59
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 144 SLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQ--DFDFYGKKMRVQY 317
           SL  LCS+YG   +V++ +T +    A V FS + +A  A   LQ  +    G   ++ +
Sbjct: 367 SLATLCSKYG---EVISARTLRNLNMALVEFSSVESAVKALDSLQGKEVSMIGAPSKISF 423

Query: 318 AK 323
           AK
Sbjct: 424 AK 425

>RBM4_HUMAN (Q9BWF3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (hLark)
          Length = 364

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYA 320
           + L A   +YG +++   +K +     A+V       A  A RGL + +F GK+M VQ +
Sbjct: 92  KELRAKFEEYGPVIECDIVKDY-----AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

Query: 321 KTK 329
            ++
Sbjct: 147 TSR 149

>RBM4_BOVIN (Q3MHX3) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a)
          Length = 362

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYA 320
           + L A   +YG +++   +K +     A+V       A  A RGL + +F GK+M VQ +
Sbjct: 92  KELRAKFEEYGPVIECDIVKDY-----AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

Query: 321 KTK 329
            ++
Sbjct: 147 TSR 149

>RBM4_RABIT (Q9BDY9) RNA-binding protein 4 (RNA-binding motif protein 4) (Lark|
           homolog)
          Length = 359

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYA 320
           + L A   +YG +++   +K +     A+V       A  A RGL + +F GK+M VQ +
Sbjct: 92  QELRAKFEEYGPVIECDIVKDY-----AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

Query: 321 KTK 329
            ++
Sbjct: 147 TSR 149

>RBM4_MOUSE (Q8C7Q4) RNA-binding protein 4 (RNA-binding motif protein 4)|
           (RNA-binding motif protein 4a) (Lark homolog) (mLark)
          Length = 361

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYA 320
           + L A   +YG +++   +K +     A+V       A  A RGL + +F GK+M VQ +
Sbjct: 92  QELRAKFEEYGPVIECDIVKDY-----AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

Query: 321 KTK 329
            ++
Sbjct: 147 TSR 149

>RBM4B_HUMAN (Q9BQ04) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 359

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYA 320
           + L A   +YG +++   +K +     A+V       A  A RGL + +F GK+M VQ +
Sbjct: 92  QELRAKFEEYGPVIECDIVKDY-----AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

Query: 321 KTK 329
            ++
Sbjct: 147 TSR 149

>RBM4B_RAT (Q64LC9) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
           (Zinc-responsive protein ZD7)
          Length = 357

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYA 320
           + L A   +YG +++   +K +     A+V       A  A RGL + +F GK+M VQ +
Sbjct: 92  QELRAKFEEYGPVIECDIVKDY-----AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

Query: 321 KTK 329
            ++
Sbjct: 147 TSR 149

>RBM4B_MOUSE (Q8VE92) RNA-binding protein 4B (RNA-binding motif protein 4B)|
           (RNA-binding protein 30) (RNA-binding motif protein 30)
          Length = 357

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYA 320
           + L A   +YG +++   +K +     A+V       A  A RGL + +F GK+M VQ +
Sbjct: 92  QELRAKFEEYGPVIECDIVKDY-----AFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLS 146

Query: 321 KTK 329
            ++
Sbjct: 147 TSR 149

>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9|
          Length = 222

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYA 320
           + L  L  +YGRI ++     H L   A+V F +   A +A  G   +D+   ++RV++ 
Sbjct: 29  KDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFP 88

Query: 321 KT 326
           +T
Sbjct: 89  RT 90

>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing|
           factor SRp30C)
          Length = 221

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYA 320
           + L  L  +YGRI ++     H L   A+V F +   A +A  G   +D+   ++RV++ 
Sbjct: 28  KDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFP 87

Query: 321 KT 326
           +T
Sbjct: 88  RT 89

>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3644

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +3

Query: 165 QYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYAKTKS 332
           +YG +V VV     +L+G A V +SEI  A  A +  +     G K++V +A  +S
Sbjct: 540 RYGPVVKVVF---DRLKGMALVLYSEIEDAQAAVKETKGRKIGGNKIKVDFANRES 592

>RBMS2_HUMAN (Q15434) RNA-binding motif, single-stranded-interacting protein 2|
           (Suppressor of CDC2 with RNA-binding motif 3)
          Length = 407

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVAL---KTHKLRGQAWVAFSEITAATNAFRGLQ 278
           + L  LC  YG+IV   A+    T+K +G  +V F   +AA  A   L+
Sbjct: 70  QDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK 118

>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9|
          Length = 221

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVALKTHKLRGQAWVAFSEITAATNAFRGLQDFDFYGKKMRVQYA 320
           + L  L  +YGRI ++     H L   A+V F +   A +A  G   +D+   ++RV++ 
Sbjct: 28  KDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFP 87

Query: 321 K 323
           +
Sbjct: 88  R 88

>RBMS1_HUMAN (P29558) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1) (Suppressor
           of CDC2 with RNA-binding motif 2)
          Length = 406

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVAL---KTHKLRGQAWVAFSEITAATNAFRGLQ 278
           + L  LC  YG+IV   A+    T+K +G  +V F    AA  A   L+
Sbjct: 76  QDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPAAAQKAVSALK 124

>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1|
           (Single-stranded DNA-binding protein MSSP-1)
          Length = 403

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 141 RSLYALCSQYGRIVDVVAL---KTHKLRGQAWVAFSEITAATNAFRGLQ 278
           + L  LC  YG+IV   A+    T+K +G  +V F    AA  A   L+
Sbjct: 76  QDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAVSALK 124

>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)|
          Length = 2716

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 429 GQQPGANAPVAPSNGTGHQP 488
           GQQPG   P  P  GTG QP
Sbjct: 345 GQQPGGPVPGGPPPGTGQQP 364


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,051,418
Number of Sequences: 219361
Number of extensions: 1115760
Number of successful extensions: 2819
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 2730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2819
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)