ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags15m05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT019068.1| Zea mays clone Contig631.F mRNA sequence Length = 1094 Score = 339 bits (171), Expect = 5e-90 Identities = 356/420 (84%) Strand = Plus / Minus Query: 59 gatgctctccggcgacgttcccccgaaccagaccgtctacttcaagaacctcaacgagaa 118 |||||| ||||||||| | ||||||| ||||||| ||||| |||| |||||||||||||| Sbjct: 1011 gatgctgtccggcgacatccccccgagccagaccatctacctcaacaacctcaacgagaa 952 Query: 119 ggtcaagaaagaagagctgaagagatcactctatgcattgtgctctcagtatggaagaat 178 |||||||||||||||| ||||||||||||| ||||| ||||| || ||||||||||| || Sbjct: 951 ggtcaagaaagaagagttgaagagatcactttatgccttgtgttcacagtatggaaggat 892 Query: 179 agtggatgttgtggccttaaaaactcataaactcagggggcaagcctgggtggcattcag 238 | ||||||| |||||| | ||||| || ||||| || |||||||| |||||||| || || Sbjct: 891 actggatgtggtggccctgaaaacacaaaaactgagagggcaagcatgggtggcgtttag 832 Query: 239 tgaaattacagcggccaccaatgctttccggggcctacaagacttcgatttttacggcnn 298 ||||||||||| || |||||||||||||| || | ||||| |||||||| ||| || Sbjct: 831 cgaaattacagctgctaccaatgctttccgtggtttgcaagatttcgatttctacagcaa 772 Query: 299 nnnnntgcgggtacaatatgcaaaaacaaagtctgactgttttgccaaagcagatggttc 358 |||| |||||||||||||||||||| || |||||| |||| |||| ||||||| | Sbjct: 771 aaaaatgcgagtacaatatgcaaaaacaaaatcagactgtattgcaaaagaagatggtac 712 Query: 359 ttatgctcctaaagagaaaaggaagaagcaagaggagaaagctgctgagaaaaaacggcg 418 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 711 ttatgcacctaaggagaaaaggaagaagcaagaggagaaagctgctgagaaaaaacgacg 652 Query: 419 aactgaagatggacaacaacccggtgctaatgctcctgtcgccccaagcaatggaactgg 478 ||| ||||| | ||||||| | || |||||| ||| |||| ||||||||||||||| Sbjct: 651 aacagaagaggcacaacaagctggcctcaatgctgctgctgcccaaagcaatggaactgg 592
>dbj|AK103337.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126A09, full insert sequence Length = 919 Score = 301 bits (152), Expect = 1e-78 Identities = 363/435 (83%), Gaps = 3/435 (0%) Strand = Plus / Plus Query: 51 gcggcggcgatgctctccggcgacgttcccccgaaccagaccgtctacttcaagaacctc 110 ||||||| |||| | ||||||||| | |||||||||||||| |||||| ||| ||||||| Sbjct: 52 gcggcggagatgttgtccggcgacatacccccgaaccagacggtctacctcaggaacctc 111 Query: 111 aacgagaaggtcaagaaagaagagctgaagagatcactctatgcattgtgctctcagtat 170 ||||||||||||||||||||||| | ||||||||||||||||| |||||||| || ||| Sbjct: 112 aacgagaaggtcaagaaagaagaattaaagagatcactctatgcgttgtgctcccaatat 171 Query: 171 ggaagaatagtggatgttgtggccttaaaaactcataaactcagggggcaagcctgggtg 230 || || ||| ||||||| |||||||||||||| | |||||| |||||||| || |||||| Sbjct: 172 gggaggatactggatgtggtggccttaaaaacacctaaactgagggggcaggcatgggtg 231 Query: 231 gcattcagtgaaattacagcggccaccaatgctttccggggcctacaagacttcgatttt 290 | ||||| |||||||| || ||||| ||||||||||| || || || || ||||||||| Sbjct: 232 gtcttcagcgaaattaccgccgccacaaatgctttccgtggactgcaggaattcgatttt 291 Query: 291 tacggcnnnnnnntgcgggtacaatatgcaaaaacaaagtctgactgttttgccaaagca 350 || ||| |||| ||||||||||| ||||||| ||||||||| |||| | | | Sbjct: 292 tatggcaaaagaatgcgagtacaatatgcgaaaacaagatctgactgtcttgcaaccgaa 351 Query: 351 gatggttcttatgctcctaaagagaaaaggaagaagcaagaggagaaagctgctgagaaa 410 ||||||||| |||||| ||||||||||| |||||||||||||||||||| || |||||| Sbjct: 352 gatggttctactgctccaaaagagaaaagaaagaagcaagaggagaaagcagcggagaaa 411 Query: 411 aaacggcgaactgaagatggacaacaacccggtgctaatgctcctgtcgccccaagcaat 470 ||||| ||| ||||||| | |||||| | ||| |||||||| || |||| ||||||| Sbjct: 412 aaacgacgagctgaagaggcgcaacaatctggtcctaatgctgct---gcccaaagcaat 468 Query: 471 ggaactggtcatcaa 485 || |||||| ||||| Sbjct: 469 gggactggttatcaa 483
>gb|AY103846.1| Zea mays PCO130752 mRNA sequence Length = 1237 Score = 281 bits (142), Expect = 1e-72 Identities = 318/379 (83%) Strand = Plus / Plus Query: 59 gatgctctccggcgacgttcccccgaaccagaccgtctacttcaagaacctcaacgagaa 118 |||||| |||| |||| | ||||| ||||||||| ||||| |||| |||||||||||||| Sbjct: 171 gatgctgtccgccgacatccccccaaaccagaccatctacctcaacaacctcaacgagaa 230 Query: 119 ggtcaagaaagaagagctgaagagatcactctatgcattgtgctctcagtatggaagaat 178 |||||||||||||||| |||||||||| || ||||| ||||||| ||||||||||| || Sbjct: 231 ggtcaagaaagaagagttgaagagatcgctttatgccctgtgctcgcagtatggaaggat 290 Query: 179 agtggatgttgtggccttaaaaactcataaactcagggggcaagcctgggtggcattcag 238 | ||||||| ||||| | ||||| || ||||| || ||||| || ||||||| || || Sbjct: 291 actggatgtggtggctctgaaaacacagaaactgagagggcaggcatgggtggtgtttag 350 Query: 239 tgaaattacagcggccaccaatgctttccggggcctacaagacttcgatttttacggcnn 298 || |||||||| || |||||||||||||| || | ||||| |||||||| ||| || Sbjct: 351 cgagattacagctgctaccaatgctttccgtggtttgcaagatttcgatttctacagcaa 410 Query: 299 nnnnntgcgggtacaatatgcaaaaacaaagtctgactgttttgccaaagcagatggttc 358 |||| |||||||||||||||||||| || |||||| |||| |||| ||||||| | Sbjct: 411 aaaaatgcgagtacaatatgcaaaaacaaaatcagactgtattgcaaaagaagatggtac 470 Query: 359 ttatgctcctaaagagaaaaggaagaagcaagaggagaaagctgctgagaaaaaacggcg 418 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 471 ttatgcacctaaggagaaaaggaagaagcaagaggagaaagctgctgagaaaaaacgacg 530 Query: 419 aactgaagatggacaacaa 437 | | ||||| | ||||||| Sbjct: 531 agcagaagaggcacaacaa 549
>dbj|D10958.1|RIC389U2B Oryza sativa mRNA for U2 small nuclear RNA-associated B antigen Length = 377 Score = 149 bits (75), Expect = 1e-32 Identities = 209/256 (81%) Strand = Plus / Plus Query: 197 aaaaactcataaactcagggggcaagcctgggtggcattcagtgaaattacagcggccac 256 |||||| | |||||| |||||||| || ||||||| ||||| |||||||| || ||||| Sbjct: 1 aaaaacacctaaactgagggggcaggcatgggtggtcttcagcgaaattaccgccgccac 60 Query: 257 caatgctttccggggcctacaagacttcgatttttacggcnnnnnnntgcgggtacaata 316 ||||||||||| || || || || ||||||||||| ||| |||| |||||||| Sbjct: 61 aaatgctttccgtggactgcaggaattcgatttttatggcaaaagaatgcgagtacaata 120 Query: 317 tgcaaaaacaaagtctgactgttttgccaaagcagatggttcttatgctcctaaagagaa 376 ||| ||||||| ||||||||| |||| | | |||||||||| |||||| |||||||| Sbjct: 121 tgcgaaaacaagatctgactgtcttgcaaccgaagatggttctactgctccaaaagagaa 180 Query: 377 aaggaagaagcaagaggagaaagctgctgagaaaaaacggcgaactgaagatggacaaca 436 ||| |||||||||||||||||||| || ||||||||||| ||| ||||||| | ||||| Sbjct: 181 aagaaagaagcaagaggagaaagcagcggagaaaaaacgacgagctgaagaggcgcaaca 240 Query: 437 acccggtgctaatgct 452 | | ||| |||||||| Sbjct: 241 atctggtcctaatgct 256
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 125 bits (63), Expect = 2e-25 Identities = 132/155 (85%) Strand = Plus / Minus Query: 138 aagagatcactctatgcattgtgctctcagtatggaagaatagtggatgttgtggcctta 197 ||||||||||||||||| |||||||| || ||||| || ||| ||||||| ||||||||| Sbjct: 10453917 aagagatcactctatgcgttgtgctcccaatatgggaggatactggatgtggtggcctta 10453858 Query: 198 aaaactcataaactcagggggcaagcctgggtggcattcagtgaaattacagcggccacc 257 ||||| | |||||| |||||||| || ||||||| ||||| |||||||| || ||||| Sbjct: 10453857 aaaacacctaaactgagggggcaggcatgggtggtcttcagcgaaattaccgccgccaca 10453798 Query: 258 aatgctttccggggcctacaagacttcgattttta 292 ||||||||||| || || || || ||||||||||| Sbjct: 10453797 aatgctttccgtggactgcaggaattcgattttta 10453763 Score = 99.6 bits (50), Expect = 9e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 51 gcggcggcgatgctctccggcgacgttcccccgaaccagaccgtctacttcaagaacctc 110 ||||||| |||| | ||||||||| | |||||||||||||| |||||| ||| ||||||| Sbjct: 10454506 gcggcggagatgttgtccggcgacatacccccgaaccagacggtctacctcaggaacctc 10454447 Query: 111 aacgagaaggtcaagaaagaag 132 |||||||||||||||||||||| Sbjct: 10454446 aacgagaaggtcaagaaagaag 10454425 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 309 gtacaatatgcaaaaacaaagtctgactgttttgccaaagcagatggttcttatgctcct 368 ||||||||||| ||||||| ||||||||| |||| | | |||||||||| |||||| Sbjct: 10453045 gtacaatatgcgaaaacaagatctgactgtcttgcaaccgaagatggttctactgctcca 10452986 Query: 369 aaagagaaaaggaagaagcaagaggagaaag 399 ||||||||||| ||||||||||||||||||| Sbjct: 10452985 aaagagaaaagaaagaagcaagaggagaaag 10452955 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cctctctcctcctcgtcttc 49 |||||||||||||||||||| Sbjct: 33953663 cctctctcctcctcgtcttc 33953682 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 gagaaaaggaagaagcaagaggag 395 ||||||||||||||||| |||||| Sbjct: 21481112 gagaaaaggaagaagcaggaggag 21481089
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 125 bits (63), Expect = 2e-25 Identities = 132/155 (85%) Strand = Plus / Minus Query: 138 aagagatcactctatgcattgtgctctcagtatggaagaatagtggatgttgtggcctta 197 ||||||||||||||||| |||||||| || ||||| || ||| ||||||| ||||||||| Sbjct: 110470 aagagatcactctatgcgttgtgctcccaatatgggaggatactggatgtggtggcctta 110411 Query: 198 aaaactcataaactcagggggcaagcctgggtggcattcagtgaaattacagcggccacc 257 ||||| | |||||| |||||||| || ||||||| ||||| |||||||| || ||||| Sbjct: 110410 aaaacacctaaactgagggggcaggcatgggtggtcttcagcgaaattaccgccgccaca 110351 Query: 258 aatgctttccggggcctacaagacttcgattttta 292 ||||||||||| || || || || ||||||||||| Sbjct: 110350 aatgctttccgtggactgcaggaattcgattttta 110316 Score = 99.6 bits (50), Expect = 9e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 51 gcggcggcgatgctctccggcgacgttcccccgaaccagaccgtctacttcaagaacctc 110 ||||||| |||| | ||||||||| | |||||||||||||| |||||| ||| ||||||| Sbjct: 111059 gcggcggagatgttgtccggcgacatacccccgaaccagacggtctacctcaggaacctc 111000 Query: 111 aacgagaaggtcaagaaagaag 132 |||||||||||||||||||||| Sbjct: 110999 aacgagaaggtcaagaaagaag 110978 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 309 gtacaatatgcaaaaacaaagtctgactgttttgccaaagcagatggttcttatgctcct 368 ||||||||||| ||||||| ||||||||| |||| | | |||||||||| |||||| Sbjct: 109598 gtacaatatgcgaaaacaagatctgactgtcttgcaaccgaagatggttctactgctcca 109539 Query: 369 aaagagaaaaggaagaagcaagaggagaaag 399 ||||||||||| ||||||||||||||||||| Sbjct: 109538 aaagagaaaagaaagaagcaagaggagaaag 109508
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence Length = 153308 Score = 125 bits (63), Expect = 2e-25 Identities = 132/155 (85%) Strand = Plus / Minus Query: 138 aagagatcactctatgcattgtgctctcagtatggaagaatagtggatgttgtggcctta 197 ||||||||||||||||| |||||||| || ||||| || ||| ||||||| ||||||||| Sbjct: 9730 aagagatcactctatgcgttgtgctcccaatatgggaggatactggatgtggtggcctta 9671 Query: 198 aaaactcataaactcagggggcaagcctgggtggcattcagtgaaattacagcggccacc 257 ||||| | |||||| |||||||| || ||||||| ||||| |||||||| || ||||| Sbjct: 9670 aaaacacctaaactgagggggcaggcatgggtggtcttcagcgaaattaccgccgccaca 9611 Query: 258 aatgctttccggggcctacaagacttcgattttta 292 ||||||||||| || || || || ||||||||||| Sbjct: 9610 aatgctttccgtggactgcaggaattcgattttta 9576 Score = 99.6 bits (50), Expect = 9e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 51 gcggcggcgatgctctccggcgacgttcccccgaaccagaccgtctacttcaagaacctc 110 ||||||| |||| | ||||||||| | |||||||||||||| |||||| ||| ||||||| Sbjct: 10319 gcggcggagatgttgtccggcgacatacccccgaaccagacggtctacctcaggaacctc 10260 Query: 111 aacgagaaggtcaagaaagaag 132 |||||||||||||||||||||| Sbjct: 10259 aacgagaaggtcaagaaagaag 10238 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 309 gtacaatatgcaaaaacaaagtctgactgttttgccaaagcagatggttcttatgctcct 368 ||||||||||| ||||||| ||||||||| |||| | | |||||||||| |||||| Sbjct: 8858 gtacaatatgcgaaaacaagatctgactgtcttgcaaccgaagatggttctactgctcca 8799 Query: 369 aaagagaaaaggaagaagcaagaggagaaag 399 ||||||||||| ||||||||||||||||||| Sbjct: 8798 aaagagaaaagaaagaagcaagaggagaaag 8768
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 125 bits (63), Expect = 2e-25 Identities = 132/155 (85%) Strand = Plus / Minus Query: 138 aagagatcactctatgcattgtgctctcagtatggaagaatagtggatgttgtggcctta 197 ||||||||||||||||| |||||||| || ||||| || ||| ||||||| ||||||||| Sbjct: 10452018 aagagatcactctatgcgttgtgctcccaatatgggaggatactggatgtggtggcctta 10451959 Query: 198 aaaactcataaactcagggggcaagcctgggtggcattcagtgaaattacagcggccacc 257 ||||| | |||||| |||||||| || ||||||| ||||| |||||||| || ||||| Sbjct: 10451958 aaaacacctaaactgagggggcaggcatgggtggtcttcagcgaaattaccgccgccaca 10451899 Query: 258 aatgctttccggggcctacaagacttcgattttta 292 ||||||||||| || || || || ||||||||||| Sbjct: 10451898 aatgctttccgtggactgcaggaattcgattttta 10451864 Score = 99.6 bits (50), Expect = 9e-18 Identities = 74/82 (90%) Strand = Plus / Minus Query: 51 gcggcggcgatgctctccggcgacgttcccccgaaccagaccgtctacttcaagaacctc 110 ||||||| |||| | ||||||||| | |||||||||||||| |||||| ||| ||||||| Sbjct: 10452607 gcggcggagatgttgtccggcgacatacccccgaaccagacggtctacctcaggaacctc 10452548 Query: 111 aacgagaaggtcaagaaagaag 132 |||||||||||||||||||||| Sbjct: 10452547 aacgagaaggtcaagaaagaag 10452526 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 309 gtacaatatgcaaaaacaaagtctgactgttttgccaaagcagatggttcttatgctcct 368 ||||||||||| ||||||| ||||||||| |||| | | |||||||||| |||||| Sbjct: 10451146 gtacaatatgcgaaaacaagatctgactgtcttgcaaccgaagatggttctactgctcca 10451087 Query: 369 aaagagaaaaggaagaagcaagaggagaaag 399 ||||||||||| ||||||||||||||||||| Sbjct: 10451086 aaagagaaaagaaagaagcaagaggagaaag 10451056 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 cctctctcctcctcgtcttc 49 |||||||||||||||||||| Sbjct: 34044135 cctctctcctcctcgtcttc 34044154 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 gagaaaaggaagaagcaagaggag 395 ||||||||||||||||| |||||| Sbjct: 21474141 gagaaaaggaagaagcaggaggag 21474118
>ref|NM_180605.1| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G06960 transcript variant AT1G06960.1 mRNA, complete cds Length = 937 Score = 58.0 bits (29), Expect = 3e-05 Identities = 98/121 (80%) Strand = Plus / Plus Query: 109 tcaacgagaaggtcaagaaagaagagctgaagagatcactctatgcattgtgctctcagt 168 |||| |||||| |||||||||||||||||||||| || || || |||| |||||||| Sbjct: 128 tcaatgagaagatcaagaaagaagagctgaagaggtctctttactgtttgttctctcagt 187 Query: 169 atggaagaatagtggatgttgtggccttaaaaactcataaactcagggggcaagcctggg 228 ||||||| || | ||||| || || ||||| |||| ||| ||| |||| ||||| |||| Sbjct: 188 ttggaagattacttgatgtggttgcgttaaagactcctaagctccggggacaagcatggg 247 Query: 229 t 229 | Sbjct: 248 t 248 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 304 tgcgggtacaatatgcaaaaacaaagtc 331 ||||| |||||||||||||| ||||||| Sbjct: 323 tgcggatacaatatgcaaaatcaaagtc 350
>ref|NM_100569.3| Arabidopsis thaliana RNA binding / nucleic acid binding AT1G06960 transcript variant AT1G06960.2 mRNA, complete cds Length = 965 Score = 58.0 bits (29), Expect = 3e-05 Identities = 98/121 (80%) Strand = Plus / Plus Query: 109 tcaacgagaaggtcaagaaagaagagctgaagagatcactctatgcattgtgctctcagt 168 |||| |||||| |||||||||||||||||||||| || || || |||| |||||||| Sbjct: 129 tcaatgagaagatcaagaaagaagagctgaagaggtctctttactgtttgttctctcagt 188 Query: 169 atggaagaatagtggatgttgtggccttaaaaactcataaactcagggggcaagcctggg 228 ||||||| || | ||||| || || ||||| |||| ||| ||| |||| ||||| |||| Sbjct: 189 ttggaagattacttgatgtggttgcgttaaagactcctaagctccggggacaagcatggg 248 Query: 229 t 229 | Sbjct: 249 t 249 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 304 tgcgggtacaatatgcaaaaacaaagtc 331 ||||| |||||||||||||| ||||||| Sbjct: 324 tgcggatacaatatgcaaaatcaaagtc 351
>gb|BT014586.1| Lycopersicon esculentum clone 134044R, mRNA sequence Length = 3165 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 102 aagaacctcaacgagaaggtcaagaaagaagagctgaagag 142 |||||| | |||||||||||||||||||||||||| ||||| Sbjct: 138 aagaacttaaacgagaaggtcaagaaagaagagctaaagag 178
>gb|AY142487.1| Arabidopsis thaliana putative spliceosomal protein (U2B) (At1g06960) mRNA, complete cds Length = 721 Score = 58.0 bits (29), Expect = 3e-05 Identities = 98/121 (80%) Strand = Plus / Plus Query: 109 tcaacgagaaggtcaagaaagaagagctgaagagatcactctatgcattgtgctctcagt 168 |||| |||||| |||||||||||||||||||||| || || || |||| |||||||| Sbjct: 50 tcaatgagaagatcaagaaagaagagctgaagaggtctctttactgtttgttctctcagt 109 Query: 169 atggaagaatagtggatgttgtggccttaaaaactcataaactcagggggcaagcctggg 228 ||||||| || | ||||| || || ||||| |||| ||| ||| |||| ||||| |||| Sbjct: 110 ttggaagattacttgatgtggttgcgttaaagactcctaagctccggggacaagcatggg 169 Query: 229 t 229 | Sbjct: 170 t 170 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 304 tgcgggtacaatatgcaaaaacaaagtc 331 ||||| |||||||||||||| ||||||| Sbjct: 245 tgcggatacaatatgcaaaatcaaagtc 272
>gb|M72892.1|POTU2B Solanum tuberosum spliceosomal protein (U2B) mRNA, complete cds Length = 921 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 102 aagaacctcaacgagaaggtcaagaaagaagagctgaagag 142 |||||| | |||||||||||||||||||||||||| ||||| Sbjct: 63 aagaacttaaacgagaaggtcaagaaagaagagctaaagag 103
>gb|AY080742.1| Arabidopsis thaliana putative spliceosomal protein (U2B) (At1g06960) mRNA, complete cds Length = 981 Score = 56.0 bits (28), Expect = 1e-04 Identities = 94/116 (81%) Strand = Plus / Plus Query: 114 gagaaggtcaagaaagaagagctgaagagatcactctatgcattgtgctctcagtatgga 173 |||||| |||||||||||||||||||||| || || || |||| |||||||| |||| Sbjct: 134 gagaagatcaagaaagaagagctgaagaggtctctttactgtttgttctctcagtttgga 193 Query: 174 agaatagtggatgttgtggccttaaaaactcataaactcagggggcaagcctgggt 229 ||| || | ||||| || || ||||| |||| ||| ||| |||| ||||| ||||| Sbjct: 194 agattacttgatgtggttgcgttaaagactcctaagctccggggacaagcatgggt 249 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 304 tgcgggtacaatatgcaaaaacaaagtc 331 ||||| |||||||||||||| ||||||| Sbjct: 324 tgcggatacaatatgcaaaatcaaagtc 351
>ref|XM_845294.1| PREDICTED: Canis familiaris similar to small nuclear ribonucleoprotein polypeptide A (predicted) (LOC608314), mRNA Length = 702 Score = 54.0 bits (27), Expect = 5e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 100 tcaagaacctcaacgagaaggtcaagaaagaagagctgaagagatcactctatgc 154 |||| ||||||||||||||| ||||||| || |||||||||| || |||||||| Sbjct: 41 tcaacaacctcaacgagaagatcaagaaggatgagctgaagaagtccctctatgc 95
>dbj|AP004529.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT01K12, TM0058a, complete sequence Length = 78249 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 100 tcaagaacctcaacgagaaggtcaagaaaga 130 ||||||| ||||||||||||||||||||||| Sbjct: 52761 tcaagaatctcaacgagaaggtcaagaaaga 52731
>emb|CR734115.2|CNS0GT82 Tetraodon nigroviridis full-length cDNA Length = 661 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 94 tctacttcaagaacctcaacgagaaggtcaagaaagaagagctgaagagatcactcta 151 ||||| |||| ||| |||| || || ||||||||||||||||||||| |||| ||||| Sbjct: 77 tctacatcaacaacatcaatgacaaagtcaagaaagaagagctgaagcgatccctcta 134
>emb|CR712587.2|CNS0GCS7 Tetraodon nigroviridis full-length cDNA Length = 832 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 94 tctacttcaagaacctcaacgagaaggtcaagaaagaagagctgaagagatcactcta 151 ||||| |||| ||| |||| || || ||||||||||||||||||||| |||| ||||| Sbjct: 34 tctacatcaacaacatcaatgacaaagtcaagaaagaagagctgaagcgatccctcta 91
>emb|CR706095.2|CNS0G7RV Tetraodon nigroviridis full-length cDNA Length = 876 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 94 tctacttcaagaacctcaacgagaaggtcaagaaagaagagctgaagagatcactcta 151 ||||| |||| ||| |||| || || ||||||||||||||||||||| |||| ||||| Sbjct: 81 tctacatcaacaacatcaatgacaaagtcaagaaagaagagctgaagcgatccctcta 138
>ref|XM_533663.2| PREDICTED: Canis familiaris similar to U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) (U1A protein) (U1-A) (LOC476454), mRNA Length = 1133 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 100 tcaagaacctcaacgagaaggtcaagaaagaagagctgaaga 141 |||| ||||||||||||||| ||||||| || |||||||||| Sbjct: 103 tcaacaacctcaacgagaagatcaagaaggatgagctgaaga 144
>emb|CR538722.1| M.truncatula DNA sequence from clone MTH2-11A20 on chromosome 3, complete sequence Length = 118829 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 312 caatatgcaaaaacaaagtctgactgttttgccaaag 348 |||||||||||||||||||| |||||| |||| |||| Sbjct: 94801 caatatgcaaaaacaaagtcagactgtgttgctaaag 94765
>gb|BC059527.1| Danio rerio hypothetical protein LOC402896, mRNA (cDNA clone IMAGE:4201535), partial cds Length = 969 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Plus Query: 121 tcaagaaagaagagctgaagagatcact 148 |||||||||||||||||||||| ||||| Sbjct: 82 tcaagaaagaagagctgaagaggtcact 109
>gb|BC049068.1| Danio rerio, clone IMAGE:5776900, mRNA Length = 1139 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Plus Query: 121 tcaagaaagaagagctgaagagatcact 148 |||||||||||||||||||||| ||||| Sbjct: 259 tcaagaaagaagagctgaagaggtcact 286
>emb|BX601648.7| Zebrafish DNA sequence from clone DKEY-14F19 in linkage group 11, complete sequence Length = 230487 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 372 gagaaaaggaagaagcaagaggagaaa 398 ||||||||||||||| ||||||||||| Sbjct: 144445 gagaaaaggaagaagaaagaggagaaa 144419
>gb|AC110195.14| Mus musculus chromosome 3, clone RP24-291L17, complete sequence Length = 171669 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 123 aagaaagaagagctgaagagat 144 |||||||||||||||||||||| Sbjct: 42747 aagaaagaagagctgaagagat 42768
>gb|AC118193.9| Mus musculus chromosome 8, clone RP23-241A10, complete sequence Length = 222682 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 370 aagagaaaaggaagaagcaagaggag 395 ||||||||||||||||| |||||||| Sbjct: 218414 aagagaaaaggaagaaggaagaggag 218389
>ref|XM_464378.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1530 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 39 tcctcgtcttcggcggcggcgatgctctcc 68 |||||||||||||||||||| |||||||| Sbjct: 812 tcctcgtcttcggcggcggctctgctctcc 783
>ref|XM_464398.1| Oryza sativa (japonica cultivar-group), mRNA Length = 689 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 36 tcctcctcgtcttcggcggcggcgatgctc 65 ||||||||||| ||||||||||||||||| Sbjct: 34 tcctcctcgtcgacggcggcggcgatgctc 63
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 98 cttcaagaacctcaacgagaaggtcaagaa 127 ||||||| || ||||||||||||||||||| Sbjct: 325556 cttcaaggacttcaacgagaaggtcaagaa 325527
>gb|AC165233.6| Mus musculus chromosome 8, clone RP23-307O2, complete sequence Length = 158925 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 370 aagagaaaaggaagaagcaagaggag 395 ||||||||||||||||| |||||||| Sbjct: 15118 aagagaaaaggaagaaggaagaggag 15093
>ref|XM_972854.1| PREDICTED: Mus musculus similar to small nuclear ribonucleoprotein polypeptide A (predicted) (LOC669071), mRNA Length = 1045 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Plus Query: 108 ctcaacgagaaggtcaagaaagaagagctgaaga 141 |||||||||||| |||||||||| ||||| |||| Sbjct: 49 ctcaacgagaagatcaagaaagatgagctcaaga 82
>ref|XM_356179.5| PREDICTED: Mus musculus similar to small nuclear ribonucleoprotein polypeptide A (predicted), transcript variant 1 (LOC382099), mRNA Length = 1045 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Plus Query: 108 ctcaacgagaaggtcaagaaagaagagctgaaga 141 |||||||||||| |||||||||| ||||| |||| Sbjct: 49 ctcaacgagaagatcaagaaagatgagctcaaga 82
>ref|XM_920133.2| PREDICTED: Mus musculus similar to small nuclear ribonucleoprotein polypeptide A (predicted), transcript variant 3 (LOC631981), mRNA Length = 892 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Plus Query: 108 ctcaacgagaaggtcaagaaagaagagctgaaga 141 |||||||||||| |||||||||| ||||| |||| Sbjct: 49 ctcaacgagaagatcaagaaagatgagctcaaga 82
>gb|AC138288.13| Mus musculus chromosome 9, clone RP23-464K22, complete sequence Length = 235544 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Plus Query: 108 ctcaacgagaaggtcaagaaagaagagctgaaga 141 |||||||||||| |||||||||| ||||| |||| Sbjct: 10260 ctcaacgagaagatcaagaaagatgagctcaaga 10293
>emb|CR725615.2|CNS0GMTX Tetraodon nigroviridis full-length cDNA Length = 1330 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 cggcggcggcgatgctctccgg 70 |||||||||||||||||||||| Sbjct: 143 cggcggcggcgatgctctccgg 122
>emb|CR724164.2|CNS0GLPM Tetraodon nigroviridis full-length cDNA Length = 1325 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 cggcggcggcgatgctctccgg 70 |||||||||||||||||||||| Sbjct: 134 cggcggcggcgatgctctccgg 113
>emb|CR638586.2|CNS0ERPC Tetraodon nigroviridis full-length cDNA Length = 1382 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 49 cggcggcggcgatgctctccgg 70 |||||||||||||||||||||| Sbjct: 396 cggcggcggcgatgctctccgg 375
>emb|CR936845.11| Mouse DNA sequence from clone DN-279H6 on chromosome 11, complete sequence Length = 101662 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 352 atggttcttatgctcctaaagagaaa 377 |||||||||||||| ||||||||||| Sbjct: 70869 atggttcttatgctgctaaagagaaa 70894
>gb|AC146592.1| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0010P23 PCR product, complete sequence Length = 19234 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcga 60 |||||||||||| ||||||||||||| Sbjct: 5259 ctcctcctcgtcgtcggcggcggcga 5284
>gb|AC161506.4| Mus musculus chromosome 3, clone RP24-210J6, complete sequence Length = 175241 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 123 aagaaagaagagctgaagagat 144 |||||||||||||||||||||| Sbjct: 30767 aagaaagaagagctgaagagat 30746
>ref|XM_963178.1| PREDICTED: Tribolium castaneum similar to U1 small nuclear ribonucleoprotein A (U1 snRNP protein A) (U1-A) (Sex determination protein snf) (LOC656668), mRNA Length = 645 Score = 44.1 bits (22), Expect = 0.44 Identities = 49/58 (84%) Strand = Plus / Plus Query: 94 tctacttcaagaacctcaacgagaaggtcaagaaagaagagctgaagagatcactcta 151 ||||| |||| ||||| |||||||| ||||||||||||| || |||| |||||||| Sbjct: 26 tctacatcaacaacctaaacgagaaaatcaagaaagaagaactaaagaagtcactcta 83
>emb|AL596136.5| Mouse DNA sequence from clone RP23-83I13 on chromosome 11 Contains the Rabep1 gene for rabaptin, RAB GTPase binding effector protein 1, a ribosomal protein 23a (Rpl23a) pseudogene, a ribosomal protein 23A (Rpl23a) pseudogene, the Nup88 gene for nucleoporin 88, four novel genes, the C1qbp gene for complement component 1 q subcomponent binding protein, the Dhx33 gene for DEAH (Asp-Glu-Ala-His) box polypeptide 33, a novel pseudogene, a CARD domain pseudogene and six CpG islands, complete sequence Length = 254116 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 352 atggttcttatgctcctaaagagaaa 377 |||||||||||||| ||||||||||| Sbjct: 83443 atggttcttatgctgctaaagagaaa 83468
>gb|AC160395.2| Mus musculus BAC clone RP23-36C19 from chromosome 12, complete sequence Length = 207840 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 381 aagaagcaagaggagaaagctgctgagaaa 410 |||||| |||||||| |||||||||||||| Sbjct: 127498 aagaaggaagaggaggaagctgctgagaaa 127527
>gb|AC160983.2| Mus musculus BAC clone RP23-335A9 from chromosome 9, complete sequence Length = 188085 Score = 44.1 bits (22), Expect = 0.44 Identities = 31/34 (91%) Strand = Plus / Plus Query: 108 ctcaacgagaaggtcaagaaagaagagctgaaga 141 |||||||||||| |||||||||| ||||| |||| Sbjct: 114644 ctcaacgagaagatcaagaaagatgagctcaaga 114677
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcga 60 |||||||||||| ||||||||||||| Sbjct: 25675049 ctcctcctcgtcgtcggcggcggcga 25675074 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 13739905 tcctaaagagaaaaggaaga 13739924
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 agggcaaggtctagcgctcgcc 31 |||||||||||||||||||||| Sbjct: 8754588 agggcaaggtctagcgctcgcc 8754609 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 12943568 tcctaaagagaaaaggaaga 12943549
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 36 tcctcctcgtcttcggcggcggcgatgctc 65 ||||||||||| ||||||||||||||||| Sbjct: 4941969 tcctcctcgtcgacggcggcggcgatgctc 4941940 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 39 tcctcgtcttcggcggcggcgatgctctcc 68 |||||||||||||||||||| |||||||| Sbjct: 4825054 tcctcgtcttcggcggcggctctgctctcc 4825025 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cggcggcggcgatgctctcc 68 |||||||||||||||||||| Sbjct: 35286871 cggcggcggcgatgctctcc 35286852 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 ctcctcctcgtcttcggcggcggc 58 |||||||||||| ||||||||||| Sbjct: 35283605 ctcctcctcgtcgtcggcggcggc 35283582 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 12201869 tcctaaagagaaaaggaaga 12201888
>dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039C01 Length = 151054 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 agggcaaggtctagcgctcgcc 31 |||||||||||||||||||||| Sbjct: 113229 agggcaaggtctagcgctcgcc 113250
>dbj|AP005849.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0031B09 Length = 132729 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 36 tcctcctcgtcttcggcggcggcgatgctc 65 ||||||||||| ||||||||||||||||| Sbjct: 13095 tcctcctcgtcgacggcggcggcgatgctc 13066
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 39 tcctcgtcttcggcggcggcgatgctctcc 68 |||||||||||||||||||| |||||||| Sbjct: 105644 tcctcgtcttcggcggcggctctgctctcc 105615
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 39 tcctcgtcttcggcggcggcgatgctctcc 68 |||||||||||||||||||| |||||||| Sbjct: 67213 tcctcgtcttcggcggcggctctgctctcc 67184
>dbj|AP004046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1145_F01 Length = 113755 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 36 tcctcctcgtcttcggcggcggcgatgctc 65 ||||||||||| ||||||||||||||||| Sbjct: 86708 tcctcctcgtcgacggcggcggcgatgctc 86679
>dbj|AK111066.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-175-E01, full insert sequence Length = 688 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Plus Query: 36 tcctcctcgtcttcggcggcggcgatgctc 65 ||||||||||| ||||||||||||||||| Sbjct: 34 tcctcctcgtcgacggcggcggcgatgctc 63
>dbj|AK069534.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023021N21, full insert sequence Length = 3324 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcga 60 |||||||||||| ||||||||||||| Sbjct: 431 ctcctcctcgtcgtcggcggcggcga 456
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcga 60 |||||||||||| ||||||||||||| Sbjct: 25993719 ctcctcctcgtcgtcggcggcggcga 25993744 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 13821903 tcctaaagagaaaaggaaga 13821922
>ref|XM_481298.1| Oryza sativa (japonica cultivar-group), mRNA Length = 216 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 55 ctcctcctcgtcgtcggcggcggcg 79
>gb|AC165307.6| Mus musculus chromosome 3, clone RP24-372I24, complete sequence Length = 136853 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 363 gctcctaaagagaaaaggaagaagcaaga 391 |||||||||||| ||||||||||| |||| Sbjct: 130600 gctcctaaagaggaaaggaagaagaaaga 130572
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 28629 ctcctcctcgtcgtcggcggcggcg 28605
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 85057 ctcctcctcgtcgtcggcggcggcg 85033
>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome Length = 1937111 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 369 aaagagaaaaggaagaagcaa 389 ||||||||||||||||||||| Sbjct: 1417026 aaagagaaaaggaagaagcaa 1417006
>gb|AC154605.2| Mus musculus BAC clone RP23-348G3 from chromosome 16, complete sequence Length = 191050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 tcaagaaagaagagctgaaga 141 ||||||||||||||||||||| Sbjct: 31151 tcaagaaagaagagctgaaga 31131
>ref|XM_883462.1| Leishmania major strain Friedlin hypothetical protein (L2743.06) partial mRNA Length = 4359 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 39 tcctcgtcttcggcggcggcgatgctctccggcgacg 75 |||||| | |||||||||||| ||||| ||||||||| Sbjct: 4108 tcctcgacgtcggcggcggcgctgctcaccggcgacg 4144
>emb|CT009567.9| Mouse DNA sequence from clone RP23-50H13 on chromosome 16, complete sequence Length = 213704 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 121 tcaagaaagaagagctgaaga 141 ||||||||||||||||||||| Sbjct: 194600 tcaagaaagaagagctgaaga 194580
>emb|AL389894.4|LMFLCHR4A Leishmania major Friedlin chromosome 4, left end Length = 225394 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 39 tcctcgtcttcggcggcggcgatgctctccggcgacg 75 |||||| | |||||||||||| ||||| ||||||||| Sbjct: 121044 tcctcgacgtcggcggcggcgctgctcaccggcgacg 121080
>gb|AC098705.2| Mus musculus BAC clone RP23-1B19 from 3, complete sequence Length = 202444 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 363 gctcctaaagagaaaaggaagaagcaaga 391 |||||||||||| ||||||||||| |||| Sbjct: 67319 gctcctaaagaggaaaggaagaagaaaga 67291
>emb|AL357149.13| Human DNA sequence from clone RP11-352E13 on chromosome 6 Contains the 3' end of the UTRN gene for utrophin (homologous to dystrophin), complete sequence Length = 201399 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 370 aagagaaaaggaagaagcaagagga 394 |||||||| |||||||||||||||| Sbjct: 199890 aagagaaatggaagaagcaagagga 199914
>gb|AC107980.8| Homo sapiens chromosome 15, clone CTD-3118D7, complete sequence Length = 141868 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 370 aagagaaaaggaagaagcaag 390 ||||||||||||||||||||| Sbjct: 135738 aagagaaaaggaagaagcaag 135758
>emb|CR932960.3| Medicago truncatula chromosome 5 clone mth4-7a5, COMPLETE SEQUENCE Length = 199033 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Minus Query: 312 caatatgcaaaaacaaagtctgactgttttgccaaag 348 |||||||||||||||||||| || ||| |||| |||| Sbjct: 166786 caatatgcaaaaacaaagtcagattgtattgctaaag 166750
>gb|AC140068.18| Medicago truncatula clone mth2-15l24, complete sequence Length = 111620 Score = 42.1 bits (21), Expect = 1.7 Identities = 33/37 (89%) Strand = Plus / Plus Query: 312 caatatgcaaaaacaaagtctgactgttttgccaaag 348 |||||||||||||||||||| || ||| |||| |||| Sbjct: 95696 caatatgcaaaaacaaagtcagattgtattgctaaag 95732
>ref|XM_686320.1| PREDICTED: Danio rerio similar to chromatin assembly factor 1, subunit A (p150) (LOC562953), mRNA Length = 3661 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 370 aagagaaaaggaagaagcaagagga 394 ||||||||||||||||| ||||||| Sbjct: 1266 aagagaaaaggaagaaggaagagga 1290
>emb|BX950546.2| Gallus gallus finished cDNA, clone ChEST566h7 Length = 1466 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 54 ctcctcctcgtcctcggcggcggcg 78
>gb|AC060788.11| Homo sapiens chromosome 8, clone CTD-2008O4, complete sequence Length = 177717 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 370 aagagaaaaggaagaagcaagagga 394 |||||||||||||| |||||||||| Sbjct: 115273 aagagaaaaggaagcagcaagagga 115297
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 11396687 ctcctcctcgtcgtcggcggcggcg 11396711 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 11657888 tcctaaagagaaaaggaaga 11657907
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 7264841 ctcctcctcgtcgtcggcggcggcg 7264865 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 cggcggcggcgatgctctccggcg 72 ||||||||||| |||||||||||| Sbjct: 5595871 cggcggcggcggtgctctccggcg 5595894
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 27153661 ctcctcctcgtcgtcggcggcggcg 27153637 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 10732494 tcctaaagagaaaaggaaga 10732513 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 94 tctacttcaagaacctcaacgagaaggtcaag 125 ||||| |||| ||||||||||||||| ||||| Sbjct: 3150393 tctacatcaacaacctcaacgagaagatcaag 3150424
>emb|AL935286.14| Zebrafish DNA sequence from clone CH211-198E14 in linkage group 22, complete sequence Length = 211297 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 370 aagagaaaaggaagaagcaagagga 394 ||||||||||||||||| ||||||| Sbjct: 186287 aagagaaaaggaagaaggaagagga 186311
>gb|AC011303.9| Homo sapiens BAC clone RP11-342D6 from 2, complete sequence Length = 188616 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 365 tcctaaagagaaaaggaagaa 385 ||||||||||||||||||||| Sbjct: 161256 tcctaaagagaaaaggaagaa 161276
>gb|AC061965.16| Homo sapiens chromosome 15, clone RP11-37J13, complete sequence Length = 169399 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 370 aagagaaaaggaagaagcaag 390 ||||||||||||||||||||| Sbjct: 160825 aagagaaaaggaagaagcaag 160805
>dbj|AP004696.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0475A09 Length = 143417 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 134292 ctcctcctcgtcgtcggcggcggcg 134316
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0068B06 Length = 143712 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 142252 ctcctcctcgtcgtcggcggcggcg 142276
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0052G07 Length = 156207 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 99845 ctcctcctcgtcgtcggcggcggcg 99869
>emb|Y09762.1|MVNPMGLGE Mokola virus genes encoding nucleoprotein, phosphoprotein, matrice protein, glycoprotein and polymerase Length = 11940 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 125 gaaagaagagctgaagagatcactc 149 |||||||||||||||||| |||||| Sbjct: 8550 gaaagaagagctgaagagctcactc 8526
>dbj|AP005097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1114E07 Length = 135511 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggcg 59 |||||||||||| |||||||||||| Sbjct: 10676 ctcctcctcgtcgtcggcggcggcg 10700
>gb|U41991.1| Caenorhabditis elegans cosmid C42D4, complete sequence Length = 35214 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 391 aggagaaagctgctgagaaaaaacg 415 |||||||||||| |||||||||||| Sbjct: 10078 aggagaaagctgatgagaaaaaacg 10102
>gb|AC154565.2| Mus musculus BAC clone RP23-403J19 from chromosome 16, complete sequence Length = 202981 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 194 cttaaaaactcataaactcag 214 ||||||||||||||||||||| Sbjct: 122994 cttaaaaactcataaactcag 122974
>gb|AY780632.1| Xanthomonas axonopodis pv. glycines strain 8ra plasmid pXAG81, complete sequence Length = 26721 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 cttcggcggcggcgatgctc 65 |||||||||||||||||||| Sbjct: 14391 cttcggcggcggcgatgctc 14410
>gb|AC116788.14| Mus musculus chromosome 8, clone RP24-296N13, complete sequence Length = 164158 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gggtacaatatgcaaaaacaaagt 330 ||||| |||||||||||||||||| Sbjct: 158383 gggtataatatgcaaaaacaaagt 158406
>ref|NM_185268.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 762 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 94 tctacttcaagaacctcaacgagaaggtcaag 125 ||||| |||| ||||||||||||||| ||||| Sbjct: 74 tctacatcaacaacctcaacgagaagatcaag 105
>ref|XM_468446.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1543 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggc 58 |||||||||||| ||||||||||| Sbjct: 260 ctcctcctcgtcgtcggcggcggc 283
>ref|XM_507058.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474F11.23 mRNA Length = 1630 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggc 58 |||||||||||| ||||||||||| Sbjct: 282 ctcctcctcgtcgtcggcggcggc 305
>ref|XM_468447.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1719 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cggcggcggcgatgctctcc 68 |||||||||||||||||||| Sbjct: 640 cggcggcggcgatgctctcc 621
>ref|XM_530943.1| PREDICTED: Pan troglodytes LOC462802 (LOC462802), mRNA Length = 849 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggc 58 ||||||||| |||||||||||||| Sbjct: 502 ctcctcctcctcttcggcggcggc 525
>ref|NM_191117.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 762 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tcctcctcgtcttcggcggcggcg 59 ||||||||||| |||||||||||| Sbjct: 106 tcctcctcgtcgtcggcggcggcg 129
>gb|AC136522.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H03, complete sequence Length = 185881 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 117094 tcctaaagagaaaaggaaga 117113
>ref|NM_026291.1| Mus musculus RIKEN cDNA 4930522H14 gene (4930522H14Rik), mRNA Length = 818 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 aaagagaaaaggaagaagca 388 |||||||||||||||||||| Sbjct: 337 aaagagaaaaggaagaagca 356
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 94 tctacttcaagaacctcaacgagaaggtcaag 125 ||||| |||| ||||||||||||||| ||||| Sbjct: 28110 tctacatcaacaacctcaacgagaagatcaag 28141
>gb|AC093492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0059G01, complete sequence Length = 141661 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 94 tctacttcaagaacctcaacgagaaggtcaag 125 ||||| |||| ||||||||||||||| ||||| Sbjct: 137637 tctacatcaacaacctcaacgagaagatcaag 137668
>gb|AC146947.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0057M18 map near E10005S, complete sequence Length = 140920 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 97714 tcctaaagagaaaaggaaga 97733
>ref|XM_593787.2| PREDICTED: Bos taurus similar to cysteinyl-tRNA synthetase (LOC515715), partial mRNA Length = 1614 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 gagaaaaggaagaagcaagaggag 395 ||||||||||||||| |||||||| Sbjct: 1221 gagaaaaggaagaagaaagaggag 1244
>gb|AC133003.3| Oryza sativa chromosome 3 BAC OSJNBa0010D22 genomic sequence, complete sequence Length = 190055 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 372 gagaaaaggaagaagcaagaggag 395 ||||||||||||||||| |||||| Sbjct: 174023 gagaaaaggaagaagcaggaggag 174000
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome Length = 5227419 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagaaagctgctgagaaaaa 412 |||||||||||||||||||| Sbjct: 807459 gagaaagctgctgagaaaaa 807478
>ref|XM_323239.1| Neurospora crassa OR74A hypothetical protein ( related to BCS1 protein precursor [imported] - Neurospora crassa OR74A emb|CAB91698.1| (AL356172) relate> (NCU03921.1) partial mRNA Length = 2340 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 aacgagaaggtcaagaaaga 130 |||||||||||||||||||| Sbjct: 820 aacgagaaggtcaagaaaga 839
>ref|XM_952467.1| Neurospora crassa OR74A hypothetical protein ( related to BCS1 protein precursor [imported] - Neurospora crassa OR74A emb|CAB91698.1| (AL356172) related> (NCU03921.1) partial mRNA Length = 2340 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 aacgagaaggtcaagaaaga 130 |||||||||||||||||||| Sbjct: 820 aacgagaaggtcaagaaaga 839
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome Length = 5228663 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagaaagctgctgagaaaaa 412 |||||||||||||||||||| Sbjct: 807354 gagaaagctgctgagaaaaa 807373
>gb|AC112789.4| Mus musculus BAC clone RP23-151J21 from chromosome 7, complete sequence Length = 200592 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 aaaggaagaagcaagaggagaaag 399 ||||||||||| |||||||||||| Sbjct: 92250 aaaggaagaaggaagaggagaaag 92227
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 92 cgtctacttcaagaacctcaacga 115 ||||| |||||||||||||||||| Sbjct: 1293675 cgtcttcttcaagaacctcaacga 1293698
>gb|AC126270.4| Mus musculus BAC clone RP23-233A12 from chromosome 10, complete sequence Length = 208709 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 215 ggggcaagcctgggtggcattcagtgaa 242 ||||||||||||||| | |||||||||| Sbjct: 11942 ggggcaagcctgggttggattcagtgaa 11915
>ref|XM_447487.1| Candida glabrata CBS138 hypothetical protein (CAGL0I05478g) partial mRNA Length = 741 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 aaaggaagaagcaagaggagaaag 399 |||||| ||||||||||||||||| Sbjct: 497 aaaggaggaagcaagaggagaaag 520
>gb|AC126433.3| Mus musculus BAC clone RP24-468I23 from chromosome 17, complete sequence Length = 165036 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 aaaggaagaagcaagaggagaaag 399 ||||| |||||||||||||||||| Sbjct: 105590 aaagggagaagcaagaggagaaag 105567
>gb|AC122256.3| Mus musculus BAC clone RP23-178H7 from 7, complete sequence Length = 183325 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 aaaggaagaagcaagaggagaaag 399 ||||||||||| |||||||||||| Sbjct: 130722 aaaggaagaaggaagaggagaaag 130699
>ref|XM_537243.2| PREDICTED: Canis familiaris similar to G patch domain containing 4 protein isoform 2 (LOC480121), mRNA Length = 932 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 373 agaaaaggaagaagcaagaggagaaagc 400 ||||||||||| || ||||||||||||| Sbjct: 715 agaaaaggaagcagaaagaggagaaagc 742
>gb|AC111145.7| Mus musculus chromosome 1, clone RP23-373L1, complete sequence Length = 165789 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 aaaggaagaagcaagaggagaaag 399 ||||||||||| |||||||||||| Sbjct: 57080 aaaggaagaagaaagaggagaaag 57103
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagaaagctgctgagaaaaa 412 |||||||||||||||||||| Sbjct: 790374 gagaaagctgctgagaaaaa 790393
>gb|AC153364.4| Mus musculus BAC clone RP23-35J21 from chromosome 10, complete sequence Length = 231668 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 215 ggggcaagcctgggtggcattcagtgaa 242 ||||||||||||||| | |||||||||| Sbjct: 156784 ggggcaagcctgggttggattcagtgaa 156757
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence Length = 142659 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 aaaaggaagaagcaagagga 394 |||||||||||||||||||| Sbjct: 24796 aaaaggaagaagcaagagga 24777
>emb|AL513043.7| Human DNA sequence from clone RP11-164N20 on chromosome 6 Contains a 60S ribosomal protein L9 (RPL9) pseudogene, the 5' end of the PHF3 gene for PHD finger protein 3 and a CpG island, complete sequence Length = 41081 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggc 58 ||||||||| |||||||||||||| Sbjct: 35465 ctcctcctcctcttcggcggcggc 35488
>gb|AE014816.1| Plasmodium falciparum 3D7 chromosome 14 section 1 of 13 of the complete sequence Length = 250029 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 394 agaaagctgctgagaaaaaa 413 |||||||||||||||||||| Sbjct: 113430 agaaagctgctgagaaaaaa 113411
>ref|NM_001001419.1| Homo sapiens SMAD, mothers against DPP homolog 5 (Drosophila) (SMAD5), transcript variant 2, mRNA Length = 7096 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 acaatatgcaaaaacaaagt 330 |||||||||||||||||||| Sbjct: 7059 acaatatgcaaaaacaaagt 7040
>ref|NM_005903.5| Homo sapiens SMAD, mothers against DPP homolog 5 (Drosophila) (SMAD5), transcript variant 1, mRNA Length = 7012 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 acaatatgcaaaaacaaagt 330 |||||||||||||||||||| Sbjct: 6975 acaatatgcaaaaacaaagt 6956
>ref|NM_001001420.1| Homo sapiens SMAD, mothers against DPP homolog 5 (Drosophila) (SMAD5), transcript variant 3, mRNA Length = 6937 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 acaatatgcaaaaacaaagt 330 |||||||||||||||||||| Sbjct: 6900 acaatatgcaaaaacaaagt 6881
>emb|AL353616.14| Human DNA sequence from clone RP11-274B18 on chromosome 9 Contains the 3' end of the PGM5 gene for phosphoglucomutase 5 (PGMRP), a novel gene (MGC34760), a squamous cell carcinoma antigen recognized by T cell (SART2) pseudogene and 2 novel genes, complete sequence Length = 169993 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 375 aaaaggaagaagcaagaggagaaa 398 |||||||||||| ||||||||||| Sbjct: 142962 aaaaggaagaagaaagaggagaaa 142985
>gb|AC095390.9| Rattus norvegicus 12 BAC CH230-7C24 (Children's Hospital Oakland Research Institute) complete sequence Length = 226532 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 aaaggaagaagcaagaggag 395 |||||||||||||||||||| Sbjct: 211730 aaaggaagaagcaagaggag 211711
>ref|XM_784220.1| PREDICTED: Strongylocentrotus purpuratus similar to Chromatin assembly factor 1 subunit A (CAF-1 subunit A) (Chromatin assembly factor I p150 subunit) (CAF-I 150 kDa subunit) (CAF-Ip150) (LOC584359), mRNA Length = 3742 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 gagaaaaggaagaagcaagaggag 395 ||||||| |||||||||||||||| Sbjct: 1268 gagaaaaagaagaagcaagaggag 1291
>emb|CR380955.1| Candida glabrata strain CBS138 chromosome I complete sequence Length = 1089401 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 376 aaaggaagaagcaagaggagaaag 399 |||||| ||||||||||||||||| Sbjct: 519177 aaaggaggaagcaagaggagaaag 519154
>emb|AL356172.1|NCB23L21 Neurospora crassa DNA linkage group VI BAC clone B23L21 Length = 83925 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 aacgagaaggtcaagaaaga 130 |||||||||||||||||||| Sbjct: 56053 aacgagaaggtcaagaaaga 56072
>dbj|AK055678.1| Homo sapiens cDNA FLJ31116 fis, clone IMR322000604, highly similar to Homo sapiens PHD finger protein 3 (PHF3) mRNA Length = 2888 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggc 58 ||||||||| |||||||||||||| Sbjct: 271 ctcctcctcctcttcggcggcggc 294
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 cctcgtcttcggcggcggcg 59 |||||||||||||||||||| Sbjct: 29126 cctcgtcttcggcggcggcg 29145
>gb|AC022418.5| Homo sapiens chromosome 5 clone CTD-2026A21, complete sequence Length = 145089 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 aaaacaaagtctgactgttt 340 |||||||||||||||||||| Sbjct: 27984 aaaacaaagtctgactgttt 28003
>ref|XM_942864.1| PREDICTED: Homo sapiens hypothetical protein LOC647493 (LOC647493), mRNA Length = 927 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 ctcctcctcgtcttcggcggcggc 58 ||||||||| |||||||||||||| Sbjct: 497 ctcctcctcctcttcggcggcggc 474
>gb|AC010347.4| Homo sapiens chromosome 5 clone CTD-2018C9, complete sequence Length = 146638 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 321 aaaacaaagtctgactgttt 340 |||||||||||||||||||| Sbjct: 469 aaaacaaagtctgactgttt 450
>gb|AC009014.5| Homo sapiens chromosome 5 clone P1_748D6, complete sequence Length = 88365 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 acaatatgcaaaaacaaagt 330 |||||||||||||||||||| Sbjct: 21662 acaatatgcaaaaacaaagt 21681
>gb|AC091911.3| Homo sapiens chromosome 5 clone RP11-211K15, complete sequence Length = 167553 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 acaatatgcaaaaacaaagt 330 |||||||||||||||||||| Sbjct: 166851 acaatatgcaaaaacaaagt 166870
>gb|AC091857.3| Homo sapiens chromosome 5 clone CTD-2315L13, complete sequence Length = 135299 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 acaatatgcaaaaacaaagt 330 |||||||||||||||||||| Sbjct: 72841 acaatatgcaaaaacaaagt 72822
>dbj|AK019777.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930560N03 product:RIKEN cDNA 4930522H14 gene, full insert sequence Length = 818 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 aaagagaaaaggaagaagca 388 |||||||||||||||||||| Sbjct: 337 aaagagaaaaggaagaagca 356
>dbj|AK005726.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700007J23 product:RIKEN cDNA 1700007J23 gene, full insert sequence Length = 849 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 aaagagaaaaggaagaagca 388 |||||||||||||||||||| Sbjct: 360 aaagagaaaaggaagaagca 379
>dbj|AK015869.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930522H14 product:hypothetical protein, full insert sequence Length = 796 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 aaagagaaaaggaagaagca 388 |||||||||||||||||||| Sbjct: 278 aaagagaaaaggaagaagca 297
>tpg|BK001394.1| TPA: TPA_exp: Homo sapiens MADH5 mRNA, partial 3'UTR Length = 5254 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 acaatatgcaaaaacaaagt 330 |||||||||||||||||||| Sbjct: 5217 acaatatgcaaaaacaaagt 5198
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tcctcctcgtcttcggcggcggcg 59 ||||||||||| |||||||||||| Sbjct: 30732196 tcctcctcgtcgtcggcggcggcg 30732219 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 13384674 tcctaaagagaaaaggaaga 13384655 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 13214221 tcctaaagagaaaaggaaga 13214202
>gb|AC018735.12| Homo sapiens BAC clone RP11-372A6 from 2, complete sequence Length = 208924 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 ctaaagagaaaaggaagaag 386 |||||||||||||||||||| Sbjct: 159143 ctaaagagaaaaggaagaag 159124
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 30 cctctctcctcctcgtcttc 49 |||||||||||||||||||| Sbjct: 104028 cctctctcctcctcgtcttc 104009
>dbj|AP003218.6| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0021A09 Length = 127973 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tcctcctcgtcttcggcggcggcg 59 ||||||||||| |||||||||||| Sbjct: 21471 tcctcctcgtcgtcggcggcggcg 21494
>dbj|AP003337.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1111_G12 Length = 112664 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 29227 tcctaaagagaaaaggaaga 29208
>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0467G09 Length = 158204 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 118159 tcctaaagagaaaaggaaga 118178
>dbj|AP004020.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1119_A01 Length = 108727 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cggcggcggcgatgctctcc 68 |||||||||||||||||||| Sbjct: 37205 cggcggcggcgatgctctcc 37186 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 ctcctcctcgtcttcggcggcggc 58 |||||||||||| ||||||||||| Sbjct: 33939 ctcctcctcgtcgtcggcggcggc 33916
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 47 ttcggcggcggcgatgctctccgg 70 |||||||||||||||| ||||||| Sbjct: 1356135 ttcggcggcggcgatgatctccgg 1356158
>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1088D01 Length = 146144 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 125032 tcctaaagagaaaaggaaga 125013
>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487E11 Length = 151303 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 86522 tcctaaagagaaaaggaaga 86503
>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664C05 Length = 165354 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 49 cggcggcggcgatgctctccggcg 72 ||||||||||| |||||||||||| Sbjct: 142779 cggcggcggcggtgctctccggcg 142802
>dbj|AP005247.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077F02 Length = 172442 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 17865 tcctaaagagaaaaggaaga 17846
>dbj|AP004878.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0474F11 Length = 139544 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cggcggcggcgatgctctcc 68 |||||||||||||||||||| Sbjct: 98921 cggcggcggcgatgctctcc 98902 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 ctcctcctcgtcttcggcggcggc 58 |||||||||||| ||||||||||| Sbjct: 95655 ctcctcctcgtcgtcggcggcggc 95632
>dbj|AP005607.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ9003_D08 Length = 88854 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 tcctaaagagaaaaggaaga 384 |||||||||||||||||||| Sbjct: 25330 tcctaaagagaaaaggaaga 25349
>gb|AC158193.2| Selaginella moellendorffii clone JGIASXY-5P19, complete sequence Length = 29585 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 36 tcctcctcgtcttcggcggcggcg 59 ||||||||||| |||||||||||| Sbjct: 14822 tcctcctcgtcgtcggcggcggcg 14799
>emb|BX648328.1|HSM808476 Homo sapiens mRNA; cDNA DKFZp686H02163 (from clone DKFZp686H02163) Length = 6977 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 acaatatgcaaaaacaaagt 330 |||||||||||||||||||| Sbjct: 6920 acaatatgcaaaaacaaagt 6901
>dbj|AK121245.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023099G09, full insert sequence Length = 1325 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tcctcctcgtcttcggcggcggcg 59 ||||||||||| |||||||||||| Sbjct: 240 tcctcctcgtcgtcggcggcggcg 263
>dbj|AK112048.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-D12, full insert sequence Length = 1630 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggc 58 |||||||||||| ||||||||||| Sbjct: 282 ctcctcctcgtcgtcggcggcggc 305
>dbj|AK102716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105D18, full insert sequence Length = 923 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 94 tctacttcaagaacctcaacgagaaggtcaag 125 ||||| |||| ||||||||||||||| ||||| Sbjct: 123 tctacatcaacaacctcaacgagaagatcaag 154
>dbj|AK099302.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143D06, full insert sequence Length = 2164 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 gagaaaaggaagaagcaagaggag 395 ||||||||||||||||| |||||| Sbjct: 218 gagaaaaggaagaagcaggaggag 241
>dbj|AK099147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055C13, full insert sequence Length = 1545 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 ctcctcctcgtcttcggcggcggc 58 |||||||||||| ||||||||||| Sbjct: 261 ctcctcctcgtcgtcggcggcggc 284
>dbj|AK065226.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H02, full insert sequence Length = 1181 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 tcctcctcgtcttcggcggcggcg 59 ||||||||||| |||||||||||| Sbjct: 231 tcctcctcgtcgtcggcggcggcg 254
>dbj|AK063765.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-B05, full insert sequence Length = 2215 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 372 gagaaaaggaagaagcaagaggag 395 ||||||||||||||||| |||||| Sbjct: 217 gagaaaaggaagaagcaggaggag 240
>emb|AL450341.10| Mouse DNA sequence from clone RP23-401L17 on chromosome 2, complete sequence Length = 214573 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 cctaaagagaaaaggaagaagcaa 389 ||||||||||||||| |||||||| Sbjct: 68980 cctaaagagaaaaggtagaagcaa 69003
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome Length = 5227293 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagaaagctgctgagaaaaa 412 |||||||||||||||||||| Sbjct: 807458 gagaaagctgctgagaaaaa 807477
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 cggcggcgatgctctccggcgacg 75 |||||||||||||| ||||||||| Sbjct: 4016381 cggcggcgatgctcgccggcgacg 4016404
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 gagaaagctgctgagaaaaa 412 |||||||||||||||||||| Sbjct: 910091 gagaaagctgctgagaaaaa 910110
>gb|AC118730.5| Mus musculus chromosome 8, clone RP24-169O12, complete sequence Length = 164561 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 307 gggtacaatatgcaaaaacaaagt 330 ||||| |||||||||||||||||| Sbjct: 29335 gggtataatatgcaaaaacaaagt 29358
>emb|AL627446.12| Mouse DNA sequence from clone RP23-211F22 on chromosome 4, complete sequence Length = 103091 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 aaagagaaaaggaagaagca 388 |||||||||||||||||||| Sbjct: 38013 aaagagaaaaggaagaagca 37994 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,381,773 Number of Sequences: 3902068 Number of extensions: 5381773 Number of successful extensions: 121117 Number of sequences better than 10.0: 166 Number of HSP's better than 10.0 without gapping: 178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 119137 Number of HSP's gapped (non-prelim): 1975 length of query: 510 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 488 effective length of database: 17,147,199,772 effective search space: 8367833488736 effective search space used: 8367833488736 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
