| Clone Name | bags16a24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 478 bits (241), Expect = e-132 Identities = 370/413 (89%) Strand = Plus / Minus Query: 25 actggtgtaacatctacgcctggcaagaccaagcatttccagacactgataatctcagaa 84 ||||||||||| ||||| |||||||||||||||||||| |||||| || ||||||||||| Sbjct: 12943 actggtgtaacctctacacctggcaagaccaagcattttcagacattggtaatctcagaa 12884 Query: 85 gagctcatgctgtgtgattgtcctggtctggtcttcccttctttttcaagctcgaggcat 144 || ||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct: 12883 gaactcattctctgtgattgtccaggtctggtcttcccttccttttcaagctcaaggcat 12824 Query: 145 gagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcacagaggagcaatt 204 |||||||| || ||||||||||||||||||||||| ||||||||||| || || || ||| Sbjct: 12823 gagatggtagcctgtggtgtcttgccaattgataggatgacaaagcataggggcgctatt 12764 Query: 205 caagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttacaaaatcaccctg 264 |||||||| ||||||||||||||||||||| | || |||||| |||| |||||||||||| Sbjct: 12763 caagtggtggcaaatcgtgtgccaagaaatgttctagaacagatttataaaatcaccctg 12704 Query: 265 ccaaagcccaaggcatatgaggaagcatctcgaccaccaaccgccgctgagttgttgatg 324 |||||||||||||||||||| || || ||||||||||| |||||||||||| || | Sbjct: 12703 ccaaagcccaaggcatatgaacaactgtcccgaccaccaactgccgctgagttgctgcgg 12644 Query: 325 gcttactgcacatctcgggggcatgtcagccatgctgggctgcctgatgagaccagggct 384 || |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 12643 gcgtactgcacatctcgagggcatgtcagtcatgctgggctgcctgatgagactagggct 12584 Query: 385 gctcgacagatactgaaggattacattgatggaaagatcccgcactttgagct 437 ||| ||||||| |||||||||||| | |||||||||||||| ||||||||||| Sbjct: 12583 gctagacagattctgaaggattacttagatggaaagatcccacactttgagct 12531
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 478 bits (241), Expect = e-132 Identities = 370/413 (89%) Strand = Plus / Minus Query: 25 actggtgtaacatctacgcctggcaagaccaagcatttccagacactgataatctcagaa 84 ||||||||||| ||||| |||||||||||||||||||| |||||| || ||||||||||| Sbjct: 24779247 actggtgtaacctctacacctggcaagaccaagcattttcagacattggtaatctcagaa 24779188 Query: 85 gagctcatgctgtgtgattgtcctggtctggtcttcccttctttttcaagctcgaggcat 144 || ||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct: 24779187 gaactcattctctgtgattgtccaggtctggtcttcccttccttttcaagctcaaggcat 24779128 Query: 145 gagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcacagaggagcaatt 204 |||||||| || ||||||||||||||||||||||| ||||||||||| || || || ||| Sbjct: 24779127 gagatggtagcctgtggtgtcttgccaattgataggatgacaaagcataggggcgctatt 24779068 Query: 205 caagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttacaaaatcaccctg 264 |||||||| ||||||||||||||||||||| | || |||||| |||| |||||||||||| Sbjct: 24779067 caagtggtggcaaatcgtgtgccaagaaatgttctagaacagatttataaaatcaccctg 24779008 Query: 265 ccaaagcccaaggcatatgaggaagcatctcgaccaccaaccgccgctgagttgttgatg 324 |||||||||||||||||||| || || ||||||||||| |||||||||||| || | Sbjct: 24779007 ccaaagcccaaggcatatgaacaactgtcccgaccaccaactgccgctgagttgctgcgg 24778948 Query: 325 gcttactgcacatctcgggggcatgtcagccatgctgggctgcctgatgagaccagggct 384 || |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 24778947 gcgtactgcacatctcgagggcatgtcagtcatgctgggctgcctgatgagactagggct 24778888 Query: 385 gctcgacagatactgaaggattacattgatggaaagatcccgcactttgagct 437 ||| ||||||| |||||||||||| | |||||||||||||| ||||||||||| Sbjct: 24778887 gctagacagattctgaaggattacttagatggaaagatcccacactttgagct 24778835
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 478 bits (241), Expect = e-132 Identities = 370/413 (89%) Strand = Plus / Minus Query: 25 actggtgtaacatctacgcctggcaagaccaagcatttccagacactgataatctcagaa 84 ||||||||||| ||||| |||||||||||||||||||| |||||| || ||||||||||| Sbjct: 64659 actggtgtaacctctacacctggcaagaccaagcattttcagacattggtaatctcagaa 64600 Query: 85 gagctcatgctgtgtgattgtcctggtctggtcttcccttctttttcaagctcgaggcat 144 || ||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct: 64599 gaactcattctctgtgattgtccaggtctggtcttcccttccttttcaagctcaaggcat 64540 Query: 145 gagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcacagaggagcaatt 204 |||||||| || ||||||||||||||||||||||| ||||||||||| || || || ||| Sbjct: 64539 gagatggtagcctgtggtgtcttgccaattgataggatgacaaagcataggggcgctatt 64480 Query: 205 caagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttacaaaatcaccctg 264 |||||||| ||||||||||||||||||||| | || |||||| |||| |||||||||||| Sbjct: 64479 caagtggtggcaaatcgtgtgccaagaaatgttctagaacagatttataaaatcaccctg 64420 Query: 265 ccaaagcccaaggcatatgaggaagcatctcgaccaccaaccgccgctgagttgttgatg 324 |||||||||||||||||||| || || ||||||||||| |||||||||||| || | Sbjct: 64419 ccaaagcccaaggcatatgaacaactgtcccgaccaccaactgccgctgagttgctgcgg 64360 Query: 325 gcttactgcacatctcgggggcatgtcagccatgctgggctgcctgatgagaccagggct 384 || |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 64359 gcgtactgcacatctcgagggcatgtcagtcatgctgggctgcctgatgagactagggct 64300 Query: 385 gctcgacagatactgaaggattacattgatggaaagatcccgcactttgagct 437 ||| ||||||| |||||||||||| | |||||||||||||| ||||||||||| Sbjct: 64299 gctagacagattctgaaggattacttagatggaaagatcccacactttgagct 64247
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 478 bits (241), Expect = e-132 Identities = 370/413 (89%) Strand = Plus / Minus Query: 25 actggtgtaacatctacgcctggcaagaccaagcatttccagacactgataatctcagaa 84 ||||||||||| ||||| |||||||||||||||||||| |||||| || ||||||||||| Sbjct: 24869031 actggtgtaacctctacacctggcaagaccaagcattttcagacattggtaatctcagaa 24868972 Query: 85 gagctcatgctgtgtgattgtcctggtctggtcttcccttctttttcaagctcgaggcat 144 || ||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct: 24868971 gaactcattctctgtgattgtccaggtctggtcttcccttccttttcaagctcaaggcat 24868912 Query: 145 gagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcacagaggagcaatt 204 |||||||| || ||||||||||||||||||||||| ||||||||||| || || || ||| Sbjct: 24868911 gagatggtagcctgtggtgtcttgccaattgataggatgacaaagcataggggcgctatt 24868852 Query: 205 caagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttacaaaatcaccctg 264 |||||||| ||||||||||||||||||||| | || |||||| |||| |||||||||||| Sbjct: 24868851 caagtggtggcaaatcgtgtgccaagaaatgttctagaacagatttataaaatcaccctg 24868792 Query: 265 ccaaagcccaaggcatatgaggaagcatctcgaccaccaaccgccgctgagttgttgatg 324 |||||||||||||||||||| || || ||||||||||| |||||||||||| || | Sbjct: 24868791 ccaaagcccaaggcatatgaacaactgtcccgaccaccaactgccgctgagttgctgcgg 24868732 Query: 325 gcttactgcacatctcgggggcatgtcagccatgctgggctgcctgatgagaccagggct 384 || |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 24868731 gcgtactgcacatctcgagggcatgtcagtcatgctgggctgcctgatgagactagggct 24868672 Query: 385 gctcgacagatactgaaggattacattgatggaaagatcccgcactttgagct 437 ||| ||||||| |||||||||||| | |||||||||||||| ||||||||||| Sbjct: 24868671 gctagacagattctgaaggattacttagatggaaagatcccacactttgagct 24868619
>dbj|AK103649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033135D01, full insert sequence Length = 1907 Score = 478 bits (241), Expect = e-132 Identities = 370/413 (89%) Strand = Plus / Plus Query: 25 actggtgtaacatctacgcctggcaagaccaagcatttccagacactgataatctcagaa 84 ||||||||||| ||||| |||||||||||||||||||| |||||| || ||||||||||| Sbjct: 955 actggtgtaacctctacacctggcaagaccaagcattttcagacattggtaatctcagaa 1014 Query: 85 gagctcatgctgtgtgattgtcctggtctggtcttcccttctttttcaagctcgaggcat 144 || ||||| || ||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct: 1015 gaactcattctctgtgattgtccaggtctggtcttcccttccttttcaagctcaaggcat 1074 Query: 145 gagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcacagaggagcaatt 204 |||||||| || ||||||||||||||||||||||| ||||||||||| || || || ||| Sbjct: 1075 gagatggtagcctgtggtgtcttgccaattgataggatgacaaagcataggggcgctatt 1134 Query: 205 caagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttacaaaatcaccctg 264 |||||||| ||||||||||||||||||||| | || |||||| |||| |||||||||||| Sbjct: 1135 caagtggtggcaaatcgtgtgccaagaaatgttctagaacagatttataaaatcaccctg 1194 Query: 265 ccaaagcccaaggcatatgaggaagcatctcgaccaccaaccgccgctgagttgttgatg 324 |||||||||||||||||||| || || ||||||||||| |||||||||||| || | Sbjct: 1195 ccaaagcccaaggcatatgaacaactgtcccgaccaccaactgccgctgagttgctgcgg 1254 Query: 325 gcttactgcacatctcgggggcatgtcagccatgctgggctgcctgatgagaccagggct 384 || |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 1255 gcgtactgcacatctcgagggcatgtcagtcatgctgggctgcctgatgagactagggct 1314 Query: 385 gctcgacagatactgaaggattacattgatggaaagatcccgcactttgagct 437 ||| ||||||| |||||||||||| | |||||||||||||| ||||||||||| Sbjct: 1315 gctagacagattctgaaggattacttagatggaaagatcccacactttgagct 1367
>gb|AF124737.1|AF124737 Zea mays clone CDAPG77 unknown mRNA Length = 1694 Score = 355 bits (179), Expect = 8e-95 Identities = 341/395 (86%) Strand = Plus / Plus Query: 43 cctggcaagaccaagcatttccagacactgataatctcagaagagctcatgctgtgtgat 102 ||||||||||| || ||||||||||||||||||||||| |||||||||| || |||||| Sbjct: 572 cctggcaagacaaaacatttccagacactgataatctctgaagagctcactctttgtgat 631 Query: 103 tgtcctggtctggtcttcccttctttttcaagctcgaggcatgagatggtggcgtgtggt 162 || |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 632 tgccctggtctggtcttcccttccttttcaagctcaaggcatgagatggtggcatgtggt 691 Query: 163 gtcttgccaattgatagaatgacaaagcacagaggagcaattcaagtggtagcaaatcgt 222 || ||||| |||||||| |||||||||||| | | ||| ||||||||||| ||| ||||| Sbjct: 692 gtgttgccgattgataggatgacaaagcaccgggaagctattcaagtggtggcagatcgt 751 Query: 223 gtgccaagaaatatcctggaacaggtttacaaaatcaccctgccaaagcccaaggcatat 282 || ||||| | ||||| || ||| |||||||||| | |||||||||| ||| ||||| Sbjct: 752 gtcccaagggacatccttgagcagatttacaaaattgcattgccaaagccaaagccatat 811 Query: 283 gaggaagcatctcgaccaccaaccgccgctgagttgttgatggcttactgcacatctcgg 342 || || || || ||||| || |||||| ||||| ||| |||||| | ||||| Sbjct: 812 gaaccccagtcccggccgccaactgctgctgagctgttgcgggcctactgcgcgtctcgt 871 Query: 343 gggcatgtcagccatgctgggctgcctgatgagaccagggctgctcgacagatactgaag 402 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 872 gggcatgtcagccatgctgggctgcctgatgagaccagggctgctcgacagatactgaag 931 Query: 403 gattacattgatggaaagatcccgcactttgagct 437 |||||||||||||| || ||||| ||||||||||| Sbjct: 932 gattacattgatggtaaaatcccacactttgagct 966
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 280 bits (141), Expect = 4e-72 Identities = 341/405 (84%), Gaps = 2/405 (0%) Strand = Plus / Minus Query: 13 ggtgagaagaagactggtgtaacatctacgcctggcaagaccaagcatttccagacactg 72 |||||||||||||||||||| || || |||||||| || |||||||||||||| ||| Sbjct: 26369117 ggtgagaagaagactggtgttactcacacacctggcaaaacaaagcatttccagacgctg 26369058 Query: 73 ataatctcagaagagctcatgctgtgtgattgtcctggtctggtcttcccttctttttca 132 ||||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| Sbjct: 26369057 ataatctcagaggagctcactctatgtgattgtcctggtctggtcttcccttccttctca 26368998 Query: 133 agctcgaggcatgagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcac 192 ||||| ||||||||||||||| | ||||||||||||||||| ||||| ||||| |||||| Sbjct: 26368997 agctcaaggcatgagatggtgtcatgtggtgtcttgccaatcgataggatgactaagcac 26368938 Query: 193 agaggagcaattcaagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttac 252 | | ||| ||||| ||||| ||| ||||||| ||||||| | |||| |||||| ||||| Sbjct: 26368937 cgggaagctattcaggtggtggcagatcgtgtcccaagaagtgtccttgaacagatttac 26368878 Query: 253 aaaatcaccctgccaaagcccaaggcatatgaggaagca-tctcgaccaccaaccgccgc 311 || || || ||||||||||| ||| ||||||| ||| || |||||||||| || || Sbjct: 26368877 aagataactctgccaaagccaaagccatatga-atcgcagtcgagaccaccaactgctgc 26368819 Query: 312 tgagttgttgatggcttactgcacatctcgggggcatgtcagccatgctgggctgcctga 371 |||| ||||| || ||||| |||| |||||||||| ||||||||||| || ||||| Sbjct: 26368818 tgagctgttgcgagcctactgtgcatccagggggcatgttagccatgctggacttcctga 26368759 Query: 372 tgagaccagggctgctcgacagatactgaaggattacattgatgg 416 ||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct: 26368758 cgagactagggctgctcgacagatactgaaagattatatcgatgg 26368714
>dbj|AK103368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126P14, full insert sequence Length = 1787 Score = 280 bits (141), Expect = 4e-72 Identities = 341/405 (84%), Gaps = 2/405 (0%) Strand = Plus / Plus Query: 13 ggtgagaagaagactggtgtaacatctacgcctggcaagaccaagcatttccagacactg 72 |||||||||||||||||||| || || |||||||| || |||||||||||||| ||| Sbjct: 573 ggtgagaagaagactggtgttactcacacacctggcaaaacaaagcatttccagacgctg 632 Query: 73 ataatctcagaagagctcatgctgtgtgattgtcctggtctggtcttcccttctttttca 132 ||||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| Sbjct: 633 ataatctcagaggagctcactctatgtgattgtcctggtctggtcttcccttccttctca 692 Query: 133 agctcgaggcatgagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcac 192 ||||| ||||||||||||||| | ||||||||||||||||| ||||| ||||| |||||| Sbjct: 693 agctcaaggcatgagatggtgtcatgtggtgtcttgccaatcgataggatgactaagcac 752 Query: 193 agaggagcaattcaagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttac 252 | | ||| ||||| ||||| ||| ||||||| ||||||| | |||| |||||| ||||| Sbjct: 753 cgggaagctattcaggtggtggcagatcgtgtcccaagaagtgtccttgaacagatttac 812 Query: 253 aaaatcaccctgccaaagcccaaggcatatgaggaagca-tctcgaccaccaaccgccgc 311 || || || ||||||||||| ||| ||||||| ||| || |||||||||| || || Sbjct: 813 aagataactctgccaaagccaaagccatatga-atcgcagtcgagaccaccaactgctgc 871 Query: 312 tgagttgttgatggcttactgcacatctcgggggcatgtcagccatgctgggctgcctga 371 |||| ||||| || ||||| |||| |||||||||| ||||||||||| || ||||| Sbjct: 872 tgagctgttgcgagcctactgtgcatccagggggcatgttagccatgctggacttcctga 931 Query: 372 tgagaccagggctgctcgacagatactgaaggattacattgatgg 416 ||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct: 932 cgagactagggctgctcgacagatactgaaagattatatcgatgg 976
>dbj|AK101466.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040I12, full insert sequence Length = 2243 Score = 280 bits (141), Expect = 4e-72 Identities = 341/405 (84%), Gaps = 2/405 (0%) Strand = Plus / Plus Query: 13 ggtgagaagaagactggtgtaacatctacgcctggcaagaccaagcatttccagacactg 72 |||||||||||||||||||| || || |||||||| || |||||||||||||| ||| Sbjct: 1080 ggtgagaagaagactggtgttactcacacacctggcaaaacaaagcatttccagacgctg 1139 Query: 73 ataatctcagaagagctcatgctgtgtgattgtcctggtctggtcttcccttctttttca 132 ||||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| Sbjct: 1140 ataatctcagaggagctcactctatgtgattgtcctggtctggtcttcccttccttctca 1199 Query: 133 agctcgaggcatgagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcac 192 ||||| ||||||||||||||| | ||||||||||||||||| ||||| ||||| |||||| Sbjct: 1200 agctcaaggcatgagatggtgtcatgtggtgtcttgccaatcgataggatgactaagcac 1259 Query: 193 agaggagcaattcaagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttac 252 | | ||| ||||| ||||| ||| ||||||| ||||||| | |||| |||||| ||||| Sbjct: 1260 cgggaagctattcaggtggtggcagatcgtgtcccaagaagtgtccttgaacagatttac 1319 Query: 253 aaaatcaccctgccaaagcccaaggcatatgaggaagca-tctcgaccaccaaccgccgc 311 || || || ||||||||||| ||| ||||||| ||| || |||||||||| || || Sbjct: 1320 aagataactctgccaaagccaaagccatatga-atcgcagtcgagaccaccaactgctgc 1378 Query: 312 tgagttgttgatggcttactgcacatctcgggggcatgtcagccatgctgggctgcctga 371 |||| ||||| || ||||| |||| |||||||||| ||||||||||| || ||||| Sbjct: 1379 tgagctgttgcgagcctactgtgcatccagggggcatgttagccatgctggacttcctga 1438 Query: 372 tgagaccagggctgctcgacagatactgaaggattacattgatgg 416 ||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct: 1439 cgagactagggctgctcgacagatactgaaagattatatcgatgg 1483
>dbj|AK060811.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-H01, full insert sequence Length = 1583 Score = 280 bits (141), Expect = 4e-72 Identities = 341/405 (84%), Gaps = 2/405 (0%) Strand = Plus / Plus Query: 13 ggtgagaagaagactggtgtaacatctacgcctggcaagaccaagcatttccagacactg 72 |||||||||||||||||||| || || |||||||| || |||||||||||||| ||| Sbjct: 420 ggtgagaagaagactggtgttactcacacacctggcaaaacaaagcatttccagacgctg 479 Query: 73 ataatctcagaagagctcatgctgtgtgattgtcctggtctggtcttcccttctttttca 132 ||||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| Sbjct: 480 ataatctcagaggagctcactctatgtgattgtcctggtctggtcttcccttccttctca 539 Query: 133 agctcgaggcatgagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcac 192 ||||| ||||||||||||||| | ||||||||||||||||| ||||| ||||| |||||| Sbjct: 540 agctcaaggcatgagatggtgtcatgtggtgtcttgccaatcgataggatgactaagcac 599 Query: 193 agaggagcaattcaagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttac 252 | | ||| ||||| ||||| ||| ||||||| ||||||| | |||| |||||| ||||| Sbjct: 600 cgggaagctattcaggtggtggcagatcgtgtcccaagaagtgtccttgaacagatttac 659 Query: 253 aaaatcaccctgccaaagcccaaggcatatgaggaagca-tctcgaccaccaaccgccgc 311 || || || ||||||||||| ||| ||||||| ||| || |||||||||| || || Sbjct: 660 aagataactctgccaaagccaaagccatatga-atcgcagtcgagaccaccaactgctgc 718 Query: 312 tgagttgttgatggcttactgcacatctcgggggcatgtcagccatgctgggctgcctga 371 |||| ||||| || ||||| |||| |||||||||| ||||||||||| || ||||| Sbjct: 719 tgagctgttgcgagcctactgtgcatccagggggcatgttagccatgctggacttcctga 778 Query: 372 tgagaccagggctgctcgacagatactgaaggattacattgatgg 416 ||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct: 779 cgagactagggctgctcgacagatactgaaagattatatcgatgg 823
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 280 bits (141), Expect = 4e-72 Identities = 341/405 (84%), Gaps = 2/405 (0%) Strand = Plus / Minus Query: 13 ggtgagaagaagactggtgtaacatctacgcctggcaagaccaagcatttccagacactg 72 |||||||||||||||||||| || || |||||||| || |||||||||||||| ||| Sbjct: 26297286 ggtgagaagaagactggtgttactcacacacctggcaaaacaaagcatttccagacgctg 26297227 Query: 73 ataatctcagaagagctcatgctgtgtgattgtcctggtctggtcttcccttctttttca 132 ||||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| Sbjct: 26297226 ataatctcagaggagctcactctatgtgattgtcctggtctggtcttcccttccttctca 26297167 Query: 133 agctcgaggcatgagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcac 192 ||||| ||||||||||||||| | ||||||||||||||||| ||||| ||||| |||||| Sbjct: 26297166 agctcaaggcatgagatggtgtcatgtggtgtcttgccaatcgataggatgactaagcac 26297107 Query: 193 agaggagcaattcaagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttac 252 | | ||| ||||| ||||| ||| ||||||| ||||||| | |||| |||||| ||||| Sbjct: 26297106 cgggaagctattcaggtggtggcagatcgtgtcccaagaagtgtccttgaacagatttac 26297047 Query: 253 aaaatcaccctgccaaagcccaaggcatatgaggaagca-tctcgaccaccaaccgccgc 311 || || || ||||||||||| ||| ||||||| ||| || |||||||||| || || Sbjct: 26297046 aagataactctgccaaagccaaagccatatga-atcgcagtcgagaccaccaactgctgc 26296988 Query: 312 tgagttgttgatggcttactgcacatctcgggggcatgtcagccatgctgggctgcctga 371 |||| ||||| || ||||| |||| |||||||||| ||||||||||| || ||||| Sbjct: 26296987 tgagctgttgcgagcctactgtgcatccagggggcatgttagccatgctggacttcctga 26296928 Query: 372 tgagaccagggctgctcgacagatactgaaggattacattgatgg 416 ||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct: 26296927 cgagactagggctgctcgacagatactgaaagattatatcgatgg 26296883
>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133978 Score = 280 bits (141), Expect = 4e-72 Identities = 341/405 (84%), Gaps = 2/405 (0%) Strand = Plus / Minus Query: 13 ggtgagaagaagactggtgtaacatctacgcctggcaagaccaagcatttccagacactg 72 |||||||||||||||||||| || || |||||||| || |||||||||||||| ||| Sbjct: 133101 ggtgagaagaagactggtgttactcacacacctggcaaaacaaagcatttccagacgctg 133042 Query: 73 ataatctcagaagagctcatgctgtgtgattgtcctggtctggtcttcccttctttttca 132 ||||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| Sbjct: 133041 ataatctcagaggagctcactctatgtgattgtcctggtctggtcttcccttccttctca 132982 Query: 133 agctcgaggcatgagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcac 192 ||||| ||||||||||||||| | ||||||||||||||||| ||||| ||||| |||||| Sbjct: 132981 agctcaaggcatgagatggtgtcatgtggtgtcttgccaatcgataggatgactaagcac 132922 Query: 193 agaggagcaattcaagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttac 252 | | ||| ||||| ||||| ||| ||||||| ||||||| | |||| |||||| ||||| Sbjct: 132921 cgggaagctattcaggtggtggcagatcgtgtcccaagaagtgtccttgaacagatttac 132862 Query: 253 aaaatcaccctgccaaagcccaaggcatatgaggaagca-tctcgaccaccaaccgccgc 311 || || || ||||||||||| ||| ||||||| ||| || |||||||||| || || Sbjct: 132861 aagataactctgccaaagccaaagccatatga-atcgcagtcgagaccaccaactgctgc 132803 Query: 312 tgagttgttgatggcttactgcacatctcgggggcatgtcagccatgctgggctgcctga 371 |||| ||||| || ||||| |||| |||||||||| ||||||||||| || ||||| Sbjct: 132802 tgagctgttgcgagcctactgtgcatccagggggcatgttagccatgctggacttcctga 132743 Query: 372 tgagaccagggctgctcgacagatactgaaggattacattgatgg 416 ||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct: 132742 cgagactagggctgctcgacagatactgaaagattatatcgatgg 132698
>emb|AL845347.4|CNS08CB9 Oryza sativa chromosome 12, . BAC OSJNBb0101I10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131689 Score = 280 bits (141), Expect = 4e-72 Identities = 341/405 (84%), Gaps = 2/405 (0%) Strand = Plus / Minus Query: 13 ggtgagaagaagactggtgtaacatctacgcctggcaagaccaagcatttccagacactg 72 |||||||||||||||||||| || || |||||||| || |||||||||||||| ||| Sbjct: 83390 ggtgagaagaagactggtgttactcacacacctggcaaaacaaagcatttccagacgctg 83331 Query: 73 ataatctcagaagagctcatgctgtgtgattgtcctggtctggtcttcccttctttttca 132 ||||||||||| ||||||| || ||||||||||||||||||||||||||||| || ||| Sbjct: 83330 ataatctcagaggagctcactctatgtgattgtcctggtctggtcttcccttccttctca 83271 Query: 133 agctcgaggcatgagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcac 192 ||||| ||||||||||||||| | ||||||||||||||||| ||||| ||||| |||||| Sbjct: 83270 agctcaaggcatgagatggtgtcatgtggtgtcttgccaatcgataggatgactaagcac 83211 Query: 193 agaggagcaattcaagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttac 252 | | ||| ||||| ||||| ||| ||||||| ||||||| | |||| |||||| ||||| Sbjct: 83210 cgggaagctattcaggtggtggcagatcgtgtcccaagaagtgtccttgaacagatttac 83151 Query: 253 aaaatcaccctgccaaagcccaaggcatatgaggaagca-tctcgaccaccaaccgccgc 311 || || || ||||||||||| ||| ||||||| ||| || |||||||||| || || Sbjct: 83150 aagataactctgccaaagccaaagccatatga-atcgcagtcgagaccaccaactgctgc 83092 Query: 312 tgagttgttgatggcttactgcacatctcgggggcatgtcagccatgctgggctgcctga 371 |||| ||||| || ||||| |||| |||||||||| ||||||||||| || ||||| Sbjct: 83091 tgagctgttgcgagcctactgtgcatccagggggcatgttagccatgctggacttcctga 83032 Query: 372 tgagaccagggctgctcgacagatactgaaggattacattgatgg 416 ||||| ||||||||||||||||||||||| ||||| || ||||| Sbjct: 83031 cgagactagggctgctcgacagatactgaaagattatatcgatgg 82987
>gb|AF124045.1| Sorghum bicolor BAC clone 110K5, partial sequence Length = 78195 Score = 242 bits (122), Expect = 8e-61 Identities = 212/242 (87%) Strand = Plus / Plus Query: 43 cctggcaagaccaagcatttccagacactgataatctcagaagagctcatgctgtgtgat 102 ||||||||||| || ||||||||||||||||||||||| |||||||||| || |||||| Sbjct: 46926 cctggcaagacaaaacatttccagacactgataatctccgaagagctcactctttgtgat 46985 Query: 103 tgtcctggtctggtcttcccttctttttcaagctcgaggcatgagatggtggcgtgtggt 162 || || |||||||||||||| || ||| ||||||| ||||||||||||||||| |||||| Sbjct: 46986 tgccccggtctggtcttcccatcctttccaagctcaaggcatgagatggtggcatgtggt 47045 Query: 163 gtcttgccaattgatagaatgacaaagcacagaggagcaattcaagtggtagcaaatcgt 222 || ||||| ||||||||||||||||||||| ||| ||| ||||||||||| ||| ||||| Sbjct: 47046 gtgttgccgattgatagaatgacaaagcaccgagaagctattcaagtggtcgcagatcgt 47105 Query: 223 gtgccaagaaatatcctggaacaggtttacaaaatcaccctgccaaagcccaaggcatat 282 || ||||| ||||||| || ||| |||||||||||||| |||| ||||| ||| ||||| Sbjct: 47106 gtcccaagggatatccttgagcagatttacaaaatcaccttgccgaagccaaagccatat 47165 Query: 283 ga 284 || Sbjct: 47166 ga 47167 Score = 67.9 bits (34), Expect = 3e-08 Identities = 43/46 (93%) Strand = Plus / Plus Query: 355 catgctgggctgcctgatgagaccagggctgctcgacagatactga 400 |||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct: 47229 catgctggtctgccggatgagaccagggctgctcgatagatactga 47274 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 396 actgaaggattacattgatggaaagatcccgcactttga 434 ||||||||||||||||||||| || ||||| |||||||| Sbjct: 47486 actgaaggattacattgatggtaaaatcccacactttga 47524
>gb|BT017248.1| Zea mays clone EL01N0307C07.c mRNA sequence Length = 950 Score = 176 bits (89), Expect = 4e-41 Identities = 125/137 (91%) Strand = Plus / Plus Query: 301 ccaaccgccgctgagttgttgatggcttactgcacatctcgggggcatgtcagccatgct 360 ||||| || |||||| ||||| ||| |||||| | ||||| |||||||||||||||||| Sbjct: 52 ccaactgctgctgagctgttgcgggcctactgcgcgtctcgtgggcatgtcagccatgct 111 Query: 361 gggctgcctgatgagaccagggctgctcgacagatactgaaggattacattgatggaaag 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 112 gggctgcctgatgagaccagggctgctcgacagatactgaaggattacattgatggtaaa 171 Query: 421 atcccgcactttgagct 437 ||||| ||||||||||| Sbjct: 172 atcccacactttgagct 188
>gb|AF124739.1|AF124739 Zea mays clone CRCAY56 unknown mRNA Length = 1044 Score = 170 bits (86), Expect = 2e-39 Identities = 122/134 (91%) Strand = Plus / Minus Query: 43 cctggcaagaccaagcatttccagacactgataatctcagaagagctcatgctgtgtgat 102 ||||||||||| || ||||||||||||||||||||||| |||||||||| || |||||| Sbjct: 159 cctggcaagacaaaacatttccagacactgataatctctgaagagctcactctttgtgat 100 Query: 103 tgtcctggtctggtcttcccttctttttcaagctcgaggcatgagatggtggcgtgtggt 162 || |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct: 99 tgccctggtctggtcttcccttccttttcaagctcaaggcatgagatggtggcatgtggt 40 Query: 163 gtcttgccaattga 176 || ||||| ||||| Sbjct: 39 gtgttgccgattga 26
>gb|AY109495.1| Zea mays CL1497_1 mRNA sequence Length = 1712 Score = 168 bits (85), Expect = 1e-38 Identities = 97/101 (96%) Strand = Plus / Minus Query: 337 tctcgggggcatgtcagccatgctgggctgcctgatgagaccagggctgctcgacagata 396 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 847 tctcgtgggcatgtcagccatgctgggctgcctgatgagaccagggctgctcgacagata 788 Query: 397 ctgaaggattacattgatggaaagatcccgcactttgagct 437 |||||||||||||||||||| || ||||| ||||||||||| Sbjct: 787 ctgaaggattacattgatggtaaaatcccacactttgagct 747 Score = 109 bits (55), Expect = 8e-21 Identities = 127/151 (84%) Strand = Plus / Minus Query: 134 gctcgaggcatgagatggtggcgtgtggtgtcttgccaattgatagaatgacaaagcaca 193 |||| ||||||||||||||||| |||||||| ||||| |||||||| |||||||||||| Sbjct: 1050 gctcaaggcatgagatggtggcatgtggtgtgttgccgattgataggatgacaaagcacc 991 Query: 194 gaggagcaattcaagtggtagcaaatcgtgtgccaagaaatatcctggaacaggtttaca 253 | | ||| ||||||||||| ||| ||||||| ||||| | ||||| || ||| |||||| Sbjct: 990 gggaagctattcaagtggtggcagatcgtgtcccaagggacatccttgagcagatttaca 931 Query: 254 aaatcaccctgccaaagcccaaggcatatga 284 |||| | |||||||||| ||| ||||||| Sbjct: 930 aaattgcattgccaaagccaaagccatatga 900 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 43 cctggcaagaccaagcatttccagacactgataatctcagaagagctcatgctgtgtgat 102 ||||||||||| || ||||||||||||||||||||||| |||||||||| || |||||| Sbjct: 1141 cctggcaagacaaaacatttccagacactgataatctctgaagagctcactctttgtgat 1082 Query: 103 tg 104 || Sbjct: 1081 tg 1080
>ref|NM_128278.1| Arabidopsis thaliana GTP binding AT2G27200 mRNA, complete cds Length = 1726 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 25 actggtgtaacatctacgcctggcaagaccaagcatttccagacactgataatctcagaa 84 |||||||| |||||||| || || || || ||||||||||||||| |||||||||| || Sbjct: 988 actggtgtcacatctacccccgggaaaacaaagcatttccagacattgataatctctgag 1047 Query: 85 gagctcatgctgtgtgattgtcctggtctggtcttcccttctttttcaagctc 137 || || ||||| || ||||| |||||| | ||||||||||| || |||||||| Sbjct: 1048 gatctaatgctctgcgattgccctggtttagtcttcccttcattctcaagctc 1100
>gb|AC007290.6| Arabidopsis thaliana chromosome 2 clone T22O13 map B68, complete sequence Length = 30219 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 25 actggtgtaacatctacgcctggcaagaccaagcatttccagacactgataatctcagaa 84 |||||||| |||||||| || || || || ||||||||||||||| |||||||||| || Sbjct: 13932 actggtgtcacatctacccccgggaaaacaaagcatttccagacattgataatctctgag 13873 Query: 85 gagctcatgctgtgtgattgtcctggtctggtcttcccttctttttcaagctc 137 || || ||||| || ||||| |||||| | ||||||||||| || |||||||| Sbjct: 13872 gatctaatgctctgcgattgccctggtttagtcttcccttcattctcaagctc 13820
>gb|BT022030.1| Arabidopsis thaliana At2g27200 gene, complete cds Length = 1878 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 25 actggtgtaacatctacgcctggcaagaccaagcatttccagacactgataatctcagaa 84 |||||||| |||||||| || || || || ||||||||||||||| |||||||||| || Sbjct: 1022 actggtgtcacatctacccccgggaaaacaaagcatttccagacattgataatctctgag 1081 Query: 85 gagctcatgctgtgtgattgtcctggtctggtcttcccttctttttcaagctc 137 || || ||||| || ||||| |||||| | ||||||||||| || |||||||| Sbjct: 1082 gatctaatgctctgcgattgccctggtttagtcttcccttcattctcaagctc 1134
>ref|NM_100714.2| Arabidopsis thaliana GTP binding AT1G08410 mRNA, complete cds Length = 2161 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 55 aagcatttccagacactgataatctcagaagagctcatgctgtgtgattgtcctggtctg 114 |||||||||||||| |||| ||||| || ||||| ||||| || ||||| |||||| | Sbjct: 1148 aagcatttccagactttgatcatctctgatgagcttatgctatgcgattgccctggttta 1207 Query: 115 gtcttcccttctttttcaagctc 137 ||||||||||| || |||||||| Sbjct: 1208 gtcttcccttcgttctcaagctc 1230
>gb|BT023444.1| Arabidopsis thaliana At1g08410 gene, complete cds Length = 1904 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 55 aagcatttccagacactgataatctcagaagagctcatgctgtgtgattgtcctggtctg 114 |||||||||||||| |||| ||||| || ||||| ||||| || ||||| |||||| | Sbjct: 1045 aagcatttccagactttgatcatctctgatgagcttatgctatgcgattgccctggttta 1104 Query: 115 gtcttcccttctttttcaagctc 137 ||||||||||| || |||||||| Sbjct: 1105 gtcttcccttcgttctcaagctc 1127
>gb|AC006932.8|AC006932 Genomic sequence for Arabidopsis thaliana BAC T27G7 from chromosome I, complete sequence Length = 89479 Score = 61.9 bits (31), Expect = 2e-06 Identities = 70/83 (84%) Strand = Plus / Plus Query: 55 aagcatttccagacactgataatctcagaagagctcatgctgtgtgattgtcctggtctg 114 |||||||||||||| |||| ||||| || ||||| ||||| || ||||| |||||| | Sbjct: 29200 aagcatttccagactttgatcatctctgatgagcttatgctatgcgattgccctggttta 29259 Query: 115 gtcttcccttctttttcaagctc 137 ||||||||||| || |||||||| Sbjct: 29260 gtcttcccttcgttctcaagctc 29282
>gb|AC124955.34| Medicago truncatula clone mth2-12l24, complete sequence Length = 115804 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 364 ctgcctgatgagaccagggctgctcgacagatactgaaggattacattgatgg 416 ||||||||||| ||||| ||| |||| ||||||||||| ||||| |||||||| Sbjct: 32054 ctgcctgatgaaaccagagcttctcgtcagatactgaaagattatattgatgg 32002
>gb|AC147405.7| Medicago truncatula clone mth2-146n5, complete sequence Length = 147062 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 364 ctgcctgatgagaccagggctgctcgacagatactgaaggattacattgatgg 416 ||||||||||| ||||| ||| |||| ||||||||||| ||||| |||||||| Sbjct: 115009 ctgcctgatgaaaccagagcttctcgtcagatactgaaagattatattgatgg 115061
>gb|AC130810.14| Medicago truncatula clone mth2-36b14, complete sequence Length = 117901 Score = 58.0 bits (29), Expect = 3e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 364 ctgcctgatgagaccagggctgctcgacagatactgaaggattacattgatgg 416 ||||||||||| ||||| ||| |||| ||||||||||| ||||| |||||||| Sbjct: 40615 ctgcctgatgaaaccagagcttctcgtcagatactgaaagattatattgatgg 40667
>ref|XM_751623.1| Ustilago maydis 521 hypothetical protein (UM00569.1) partial mRNA Length = 2457 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 40 acgcctggcaagaccaagcatttccagac 68 ||||| ||||||||||||||||||||||| Sbjct: 1597 acgccaggcaagaccaagcatttccagac 1625
>ref|XM_502114.1| Yarrowia lipolytica CLIB122, YALI0C21956g predicted mRNA Length = 2127 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Plus Query: 91 atgctgtgtgattgtcctggtctggtcttccc 122 ||||||||||||||||| |||||||| ||||| Sbjct: 1357 atgctgtgtgattgtcccggtctggtgttccc 1388
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 48.1 bits (24), Expect = 0.024 Identities = 30/32 (93%) Strand = Plus / Minus Query: 91 atgctgtgtgattgtcctggtctggtcttccc 122 ||||||||||||||||| |||||||| ||||| Sbjct: 2936468 atgctgtgtgattgtcccggtctggtgttccc 2936437
>ref|XM_323505.1| Neurospora crassa OR74A hypothetical protein ( (AL513445) conserved hypothetical protein [Neurospora crassa OR74A] ) (NCU04166.1) partial mRNA Length = 1962 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 46 ggcaagaccaagcatttccagac 68 ||||||||||||||||||||||| Sbjct: 1108 ggcaagaccaagcatttccagac 1130
>ref|XM_955631.1| Neurospora crassa OR74A hypothetical protein ( (AL513445) conserved hypothetical protein [Neurospora crassa OR74A] ) (NCU04166.1) partial mRNA Length = 1962 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 46 ggcaagaccaagcatttccagac 68 ||||||||||||||||||||||| Sbjct: 1108 ggcaagaccaagcatttccagac 1130
>emb|AL513445.1|NCB7A16 Neurospora crassa DNA linkage group V BAC clone B7A16 Length = 74014 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 46 ggcaagaccaagcatttccagac 68 ||||||||||||||||||||||| Sbjct: 47200 ggcaagaccaagcatttccagac 47178
>emb|BX821027.1|CNS0A8N7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH92ZE04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1850 Score = 46.1 bits (23), Expect = 0.095 Identities = 68/83 (81%) Strand = Plus / Plus Query: 55 aagcatttccagacactgataatctcagaagagctcatgctgtgtgattgtcctggtctg 114 ||||||||||||||| | ||||||| || || || ||| | || ||||| |||||| | Sbjct: 1145 aagcatttccagacattcataatctttgaggatctaatgttctgcgattgccctggttta 1204 Query: 115 gtcttcccttctttttcaagctc 137 ||||||||||| || |||||||| Sbjct: 1205 gtcttcccttcattctcaagctc 1227
>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 Length = 1913118 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Plus Query: 89 tcatgctgtgtgattgtcctggtctggtcttccc 122 ||||||| ||||||||||| |||||||| ||||| Sbjct: 1584221 tcatgctctgtgattgtcccggtctggtgttccc 1584254
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 94 ctgtgtgattgtcctggtctggtcttccc 122 |||||||||||||| ||||| |||||||| Sbjct: 405110 ctgtgtgattgtcccggtcttgtcttccc 405138
>ref|XM_387370.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG07194.1) partial mRNA Length = 2001 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 94 ctgtgtgattgtcctggtctggtcttccc 122 |||||||||||||| ||||| |||||||| Sbjct: 1171 ctgtgtgattgtcccggtctcgtcttccc 1199
>ref|XM_569478.1| Cryptococcus neoformans var. neoformans JEC21 GTP-binding protein (CNC01470) partial mRNA Length = 2259 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 94 ctgtgtgattgtcctggtctggtcttccc 122 |||||||||||||| ||||| |||||||| Sbjct: 1372 ctgtgtgattgtcccggtcttgtcttccc 1400
>emb|AL929108.5| Zebrafish DNA sequence from clone CH211-239J9 in linkage group 6 Contains the 3' part of a novel gene similar to human and mouse SPAG1 (sperm associated antigen 1), a novel gene similar to human and mouse COX6C (cytochrome c oxidase, subunit VIc), a novel gene, a novel gene similar to mouse and human MBC2 (membrane bound C2 domain containing protein), a novel gene similar to vertebrate ITGB4BP (integrin beta 4 binding protein), the 3' part of novel gene similar to vertebrate MMP24 (membrane-inserted matrix metalloproteinase 24) and two predicted CpG islands, complete sequence Length = 161277 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 agctcatgctgtgtgattgtc 106 ||||||||||||||||||||| Sbjct: 109267 agctcatgctgtgtgattgtc 109287
>emb|BX005417.13| Zebrafish DNA sequence from clone DKEY-240N22, complete sequence Length = 175997 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 341 gggggcatgtcagccatgctg 361 ||||||||||||||||||||| Sbjct: 61462 gggggcatgtcagccatgctg 61442
>ref|XM_519227.1| PREDICTED: Pan troglodytes similar to Transformation/transcription domain-associated protein (350/400 kDa PCAF-associated factor) (PAF350/400) (STAF40) (Tra1 homolog) (LOC463564), mRNA Length = 12780 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 357 tgctgggctgcctgatgagaccag 380 ||||||||||||||||| |||||| Sbjct: 9263 tgctgggctgcctgatgggaccag 9240
>gb|AC132918.17| Mus musculus chromosome 15, clone RP24-328F10, complete sequence Length = 186125 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 235 atcctggaacaggtttacaaaatc 258 ||||||||||||| |||||||||| Sbjct: 166746 atcctggaacaggcttacaaaatc 166723
>gb|AC183538.4| Pan troglodytes BAC clone CH251-395P17 from chromosome x, complete sequence Length = 186120 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 248 tttacaaaatcaccctgccaaagcccaa 275 |||||||||| |||| |||||||||||| Sbjct: 25509 tttacaaaattacccagccaaagcccaa 25536
>ref|NM_001005557.1| Rattus norvegicus A kinase (PRKA) anchor protein 3 (Akap3), mRNA Length = 2889 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gtgtgccaagaaatatcctg 240 |||||||||||||||||||| Sbjct: 1246 gtgtgccaagaaatatcctg 1265
>gb|AC124416.4| Mus musculus BAC clone RP24-308I2 from chromosome 9, complete sequence Length = 184879 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 187 aagcacagaggagcaattcaagtg 210 ||||||||| |||||||||||||| Sbjct: 123259 aagcacagaagagcaattcaagtg 123236
>gb|BC081924.1| Rattus norvegicus A kinase (PRKA) anchor protein 3, mRNA (cDNA clone MGC:93915 IMAGE:7112940), complete cds Length = 2889 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 gtgtgccaagaaatatcctg 240 |||||||||||||||||||| Sbjct: 1246 gtgtgccaagaaatatcctg 1265
>gb|AC132236.3| Mus musculus BAC clone RP24-500O16 from chromosome 5, complete sequence Length = 157311 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 aagaaatatcctggaacagg 247 |||||||||||||||||||| Sbjct: 26986 aagaaatatcctggaacagg 27005
>ref|XM_782619.1| PREDICTED: Strongylocentrotus purpuratus similar to mucin 17 (LOC582675), mRNA Length = 15780 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 ctggtgtaacatctacgcct 45 |||||||||||||||||||| Sbjct: 5705 ctggtgtaacatctacgcct 5724
>emb|AL590625.16| Mouse DNA sequence from clone RP23-467M8 on chromosome 13 Contains the Foxf2 gene for forkhead box F2, a novel gene and two CpG islands, complete sequence Length = 165745 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 gtcttcccttctttttcaag 134 |||||||||||||||||||| Sbjct: 56928 gtcttcccttctttttcaag 56947
>gb|BC066695.1| Danio rerio zgc:76988, mRNA (cDNA clone MGC:76988 IMAGE:6525951), complete cds Length = 2420 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 ctgtgtgattgtcctggtctggtc 117 ||||||||||||||||| |||||| Sbjct: 1333 ctgtgtgattgtcctggactggtc 1356
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 gaccaccaaccgccgctgag 315 |||||||||||||||||||| Sbjct: 222242 gaccaccaaccgccgctgag 222223
>ref|XM_691838.1| PREDICTED: Danio rerio similar to guanine nucleotide binding protein-like 1 (LOC568505), mRNA Length = 2034 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 94 ctgtgtgattgtcctggtctggtcttcccttc 125 |||||||||||||| || || ||||||||||| Sbjct: 1243 ctgtgtgattgtcccgggcttgtcttcccttc 1274
>ref|XM_691633.1| PREDICTED: Danio rerio similar to guanine nucleotide binding protein-like 1 (LOC568311), mRNA Length = 1620 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 94 ctgtgtgattgtcctggtctggtcttcccttc 125 |||||||||||||| || || ||||||||||| Sbjct: 1261 ctgtgtgattgtcccgggcttgtcttcccttc 1292
>gb|AC012169.8|AC012169 Homo sapiens chromosome 15 clone RP11-522G20 map 15q21.2, complete sequence Length = 180722 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 cctggtctggtcttcccttc 125 |||||||||||||||||||| Sbjct: 170763 cctggtctggtcttcccttc 170782
>ref|NM_212642.1| Danio rerio zgc:76988 (zgc:76988), mRNA Length = 2420 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 ctgtgtgattgtcctggtctggtc 117 ||||||||||||||||| |||||| Sbjct: 1333 ctgtgtgattgtcctggactggtc 1356
>emb|BX323547.4| Zebrafish DNA sequence from clone CH211-266N13 in linkage group 16, complete sequence Length = 96492 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 94 ctgtgtgattgtcctggtctggtcttcccttc 125 |||||||||||||| || || ||||||||||| Sbjct: 209 ctgtgtgattgtcccgggcttgtcttcccttc 240
>gb|AY957953.1| Homo sapiens cytochrome P450, family 19, subfamily A, polypeptide 1 (CYP19A1) gene, complete cds Length = 133132 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cctggtctggtcttcccttc 125 |||||||||||||||||||| Sbjct: 73793 cctggtctggtcttcccttc 73774
>gb|AC004893.1|AC004893 Homo sapiens PAC clone RP4-808A1 from 7q21.1-q31.1, complete sequence Length = 103738 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 357 tgctgggctgcctgatgagaccag 380 ||||||||||||||||| |||||| Sbjct: 24682 tgctgggctgcctgatgggaccag 24659
>emb|BX294670.6| Zebrafish DNA sequence from clone CH211-154O6 in linkage group 16, complete sequence Length = 199070 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 94 ctgtgtgattgtcctggtctggtcttcccttc 125 |||||||||||||| || || ||||||||||| Sbjct: 197279 ctgtgtgattgtcccgggcttgtcttcccttc 197310
>gb|AC102895.7| Mus musculus chromosome 15, clone RP24-356D22, complete sequence Length = 165778 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 235 atcctggaacaggtttacaaaatc 258 ||||||||||||| |||||||||| Sbjct: 161021 atcctggaacaggcttacaaaatc 161044
>emb|AL732420.13| Mouse DNA sequence from clone RP23-84O5 on chromosome X, complete sequence Length = 191312 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ttccagacactgataatctc 80 |||||||||||||||||||| Sbjct: 129396 ttccagacactgataatctc 129415
>emb|AL928791.10| Mouse DNA sequence from clone RP23-65N20 on chromosome 2, complete sequence Length = 210148 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 tgaaggattacattgatgga 417 |||||||||||||||||||| Sbjct: 153410 tgaaggattacattgatgga 153429
>emb|AL929380.9| Mouse DNA sequence from clone RP23-467E8 on chromosome 2, complete sequence Length = 140917 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 cctgccaaagcccaaggcat 280 |||||||||||||||||||| Sbjct: 130423 cctgccaaagcccaaggcat 130442
>dbj|AP006737.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT20F11, TM1687, complete sequence Length = 91649 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cagaggagcaattcaagtgg 211 |||||||||||||||||||| Sbjct: 3171 cagaggagcaattcaagtgg 3190
>dbj|AP006736.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45I15, TM1494, complete sequence Length = 114162 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 cagaggagcaattcaagtgg 211 |||||||||||||||||||| Sbjct: 68173 cagaggagcaattcaagtgg 68192
>emb|AL627188.18| Mouse DNA sequence from clone RP23-113G7 on chromosome 4, complete sequence Length = 208153 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 cttcccttctttttcaagct 136 |||||||||||||||||||| Sbjct: 4643 cttcccttctttttcaagct 4662
>emb|AL806535.7| Mouse DNA sequence from clone RP23-456J6 on chromosome 4, complete sequence Length = 181854 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 cagaagagctcatgctgtgt 99 |||||||||||||||||||| Sbjct: 10344 cagaagagctcatgctgtgt 10363 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,947,904 Number of Sequences: 3902068 Number of extensions: 3947904 Number of successful extensions: 93876 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 93650 Number of HSP's gapped (non-prelim): 214 length of query: 437 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 415 effective length of database: 17,147,199,772 effective search space: 7116087905380 effective search space used: 7116087905380 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)