ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15l23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X85544.2|HVMNE1MR H.vulgare mRNA for putative zinc finger pr... 216 1e-53
2emb|AJ314594.1|HVU314594 Hordeum vulgare mRNA for putative ribos... 172 2e-40
3emb|AJ314595.1|HVU314595 Hordeum vulgare mRNA for putative ribos... 129 2e-27
4emb|AJ314570.1|HVU314570 Hordeum vulgare rps27C gene for putativ... 123 1e-25
5gb|AY781904.1| Saccharum hybrid cultivar isolate c322 S27 riboso... 113 1e-22
6ref|XM_472001.1| Oryza sativa (japonica cultivar-group), predic... 113 1e-22
7gb|BT018246.1| Zea mays clone EL01N0563D10.c mRNA sequence 113 1e-22
8emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4,... 113 1e-22
9emb|AL606995.3|OSJN00131 Oryza sativa genomic DNA, chromosome 4,... 113 1e-22
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 113 1e-22
11dbj|AK068012.1| Oryza sativa (japonica cultivar-group) cDNA clon... 113 1e-22
12gb|AY106437.1| Zea mays PCO122601 mRNA sequence 113 1e-22
13ref|XM_472347.1| Oryza sativa (japonica cultivar-group), predic... 111 5e-22
14emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4,... 111 5e-22
15gb|AY781893.1| Saccharum hybrid cultivar isolate 32a2pro ribosom... 100 2e-18
16ref|XM_465641.1| Oryza sativa (japonica cultivar-group), mRNA 96 3e-17
17dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 96 3e-17
18dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic D... 96 3e-17
19dbj|AK099723.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 3e-17
20gb|AY104604.1| Zea mays PCO122603 mRNA sequence 82 5e-13
21gb|AF111029.2|AF111029 Zea mays 40S ribosomal protein S27 homolo... 82 5e-13
22gb|BT017012.1| Zea mays clone EK07D2311A08.c mRNA sequence 74 1e-10
23gb|AY104498.1| Zea mays PCO122602 mRNA sequence 70 2e-09
24gb|AY107723.1| Zea mays PCO067113 mRNA sequence 58 7e-06
25emb|AJ276024.1|MGA276024 Meleagris gallopavo partial mRNA for me... 48 0.007
26gb|CP000110.1| Synechococcus sp. CC9605, complete genome 44 0.10
27ref|XM_369161.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 42 0.41
28gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 1.6
29gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome 38 6.4
30gb|AY769343.1| Bombyx mori ribosomal protein S27A (RpS27A) mRNA,... 38 6.4
31gb|DQ200392.1| Solanum tuberosum clone 068E12 ubiquitin extensio... 38 6.4
32gb|BC075875.1| Danio rerio zgc:92062, mRNA (cDNA clone MGC:92062... 38 6.4
33gb|DQ125483.1| Bombyx mori ubiquitin/ribosomal protein S27Ae fus... 38 6.4
34ref|XM_547571.2| PREDICTED: Canis familiaris similar to 40S ribo... 38 6.4
35ref|XM_755249.1| Ustilago maydis 521 hypothetical protein (UM041... 38 6.4
36ref|XM_755548.1| Ustilago maydis 521 hypothetical protein (UM044... 38 6.4
37emb|AM040012.1| Cicindela campestris mRNA for ubiquitin/ribosoma... 38 6.4
38gb|AF297552.1| Blattella germanica circadian clock protein PERIO... 38 6.4
39ref|XM_850032.1| PREDICTED: Canis familiaris similar to ribosoma... 38 6.4
40emb|AM040016.1| Timarcha balearica mRNA for ubiquitin/ribosomal ... 38 6.4
41emb|AM040014.1| Eucinetus sp. APV-2005 mRNA for ubiquitin/riboso... 38 6.4
42gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 38 6.4
43gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 38 6.4
44emb|Z11669.1|STUQ10 S.tuberosum mRNA for ubiquitin monomer/ribos... 38 6.4
45emb|Z18946.1|MLCGA Mycobacteriophage L5 complete genome 38 6.4
46emb|Y10024.1|STUBIEP Solanum tuberosum mRNA for ubiquitin extens... 38 6.4
47gb|DQ445503.1| Graphocephala atropunctata isolate WHGA0105 putat... 38 6.4
48emb|X66875.1|AOULF A.officinalis mRNA for ubiquitin-long tail fu... 38 6.4
49emb|X58253.1|LEUBI3 Tomato ubi3 gene for ubiquitin 38 6.4
50emb|X53524.1|MSUBIFUS Tobacco hawkmoth ubiquitin-fusion gene 38 6.4
51emb|BX569779.35| Zebrafish DNA sequence from clone CH211-113I9 i... 38 6.4
52ref|NM_001002382.1| Danio rerio zgc:92062 (zgc:92062), mRNA 38 6.4
53gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 38 6.4
54gb|AC135565.18| Medicago truncatula clone mth2-19b12, complete s... 38 6.4
55emb|AJ783765.1| Papilio dardanus mRNA for ubiquitin/ribosomal pr... 38 6.4
56gb|DQ116441.1| Gossypium hirsutum ubiquitin extension protein (U... 38 6.4
57gb|AY066029.1| Branchiostoma belcheri tsingtaunese ubiquitin/rib... 38 6.4
58dbj|AB021973.1| Bombyx mori UBI2 mRNA for ubiquitin/79aa fusion ... 38 6.4
59gb|AY072292.1| Spodoptera frugiperda ribosomal protein S27A mRNA... 38 6.4
60gb|AF298826.1|AF298826 Prunus avium ubiquitin/ribosomal protein ... 38 6.4
61dbj|AP000642.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 6.4
62gb|L28008.1|WHTWALI Triticum aestivum (wali7) mRNA, 3' end, part... 38 6.4
63gb|L22576.1|POTUBI3A Solanum tuberosum ubiquitin/ribosomal fusio... 38 6.4 
>emb|X85544.2|HVMNE1MR H.vulgare mRNA for putative zinc finger protein
          Length = 493

 Score =  216 bits (109), Expect = 1e-53
 Identities = 109/109 (100%)
 Strand = Plus / Plus

                                                                       
Query: 28  gcgcggttcccgagcaagccctagcctcccacgatggtgctgcagaacgacatcgacctg 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   gcgcggttcccgagcaagccctagcctcccacgatggtgctgcagaacgacatcgacctg 61

                                                            
Query: 88  ctgaacccgccggcggagctcgagaagctcaagcacaagaagaagcgcc 136
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  ctgaacccgccggcggagctcgagaagctcaagcacaagaagaagcgcc 110
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>emb|AJ314594.1|HVU314594 Hordeum vulgare mRNA for putative ribosomal protein S27 (rps27A
           gene)
          Length = 596

 Score =  172 bits (87), Expect = 2e-40
 Identities = 96/99 (96%)
 Strand = Plus / Plus

                                                                       
Query: 38  cgagcaagccctagcctcccacgatggtgctgcagaacgacatcgacctgctgaacccgc 97
           ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 44  cgagcaaaccctagcctcccacgatggtgctgcagaacgacatcgacctgctcaacccgc 103

                                                  
Query: 98  cggcggagctcgagaagctcaagcacaagaagaagcgcc 136
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 104 cggccgagctcgagaagctcaagcacaagaagaagcgcc 142
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>emb|AJ314595.1|HVU314595 Hordeum vulgare mRNA for putative ribosomal protein S27 (rps27C
           gene)
          Length = 521

 Score =  129 bits (65), Expect = 2e-27
 Identities = 74/77 (96%)
 Strand = Plus / Plus

                                                                       
Query: 60  gatggtgctgcagaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaa 119
           ||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 85  gatggtgctccagaacgacatcgacctcctcaacccgccggcggagctcgagaagctcaa 144

                            
Query: 120 gcacaagaagaagcgcc 136
           |||||||||||||||||
Sbjct: 145 gcacaagaagaagcgcc 161
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>emb|AJ314570.1|HVU314570 Hordeum vulgare rps27C gene for putative ribosomal protein S27
          Length = 1754

 Score =  123 bits (62), Expect = 1e-25
 Identities = 71/74 (95%)
 Strand = Plus / Plus

                                                                       
Query: 63  ggtgctgcagaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagca 122
           |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 477 ggtgctccagaacgacatcgacctcctcaacccgccggcggagctcgagaagctcaagca 536

                         
Query: 123 caagaagaagcgcc 136
           ||||||||||||||
Sbjct: 537 caagaagaagcgcc 550
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>gb|AY781904.1| Saccharum hybrid cultivar isolate c322 S27 ribosomal protein mRNA,
           complete cds
          Length = 567

 Score =  113 bits (57), Expect = 1e-22
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                       
Query: 60  gatggtgctgcagaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaa 119
           ||||||||||||||||||||||||| |||| ||||||||||| ||||| |||||||| ||
Sbjct: 91  gatggtgctgcagaacgacatcgacttgctcaacccgccggcagagcttgagaagctaaa 150

                            
Query: 120 gcacaagaagaagcgcc 136
           |||||||||||||||||
Sbjct: 151 gcacaagaagaagcgcc 167
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>ref|XM_472001.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 261

 Score =  113 bits (57), Expect = 1e-22
 Identities = 63/65 (96%)
 Strand = Plus / Plus

                                                                       
Query: 72  gaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaa 131
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 12  gaacgacatcgacctgcttaacccgccggcggagctggagaagctcaagcacaagaagaa 71

                
Query: 132 gcgcc 136
           |||||
Sbjct: 72  gcgcc 76
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>gb|BT018246.1| Zea mays clone EL01N0563D10.c mRNA sequence
          Length = 536

 Score =  113 bits (57), Expect = 1e-22
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                       
Query: 60  gatggtgctgcagaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaa 119
           |||||| || ||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct: 46  gatggttctccagaacgacatcgaccttctgaacccgccggcagagctcgagaaactcaa 105

                            
Query: 120 gcacaagaagaagcgcc 136
           |||||||||||||||||
Sbjct: 106 gcacaagaagaagcgcc 122
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>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02,
            complete sequence
          Length = 172435

 Score =  113 bits (57), Expect = 1e-22
 Identities = 63/65 (96%)
 Strand = Plus / Plus

                                                                        
Query: 72   gaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaa 131
            |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 936  gaacgacatcgacctgcttaacccgccggcggagctggagaagctcaagcacaagaagaa 995

                 
Query: 132  gcgcc 136
            |||||
Sbjct: 996  gcgcc 1000
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>emb|AL606995.3|OSJN00131 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085H11,
              complete sequence
          Length = 132394

 Score =  113 bits (57), Expect = 1e-22
 Identities = 63/65 (96%)
 Strand = Plus / Plus

                                                                          
Query: 72     gaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaa 131
              |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 132268 gaacgacatcgacctgcttaacccgccggcggagctggagaagctcaagcacaagaagaa 132327

                   
Query: 132    gcgcc 136
              |||||
Sbjct: 132328 gcgcc 132332
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  113 bits (57), Expect = 1e-22
 Identities = 63/65 (96%)
 Strand = Plus / Plus

                                                                            
Query: 72       gaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaa 131
                |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 16471702 gaacgacatcgacctgcttaacccgccggcggagctggagaagctcaagcacaagaagaa 16471761

                     
Query: 132      gcgcc 136
                |||||
Sbjct: 16471762 gcgcc 16471766



 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                            
Query: 73       aacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaag 132
                |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 19721488 aacgacatcgacctgctgaacccgcccgcggagctggagaagctcaagcacaagaagaag 19721547

                    
Query: 133      cgcc 136
                ||||
Sbjct: 19721548 cgcc 19721551
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>dbj|AK068012.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129I21, full
           insert sequence
          Length = 878

 Score =  113 bits (57), Expect = 1e-22
 Identities = 63/65 (96%)
 Strand = Plus / Plus

                                                                       
Query: 72  gaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaa 131
           |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 101 gaacgacatcgacctgcttaacccgccggcggagctggagaagctcaagcacaagaagaa 160

                
Query: 132 gcgcc 136
           |||||
Sbjct: 161 gcgcc 165
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>gb|AY106437.1| Zea mays PCO122601 mRNA sequence
          Length = 610

 Score =  113 bits (57), Expect = 1e-22
 Identities = 72/77 (93%)
 Strand = Plus / Plus

                                                                       
Query: 60  gatggtgctgcagaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaa 119
           |||||| || ||||||||||||||||| || ||||||||||| |||||||||||||||||
Sbjct: 116 gatggttctccagaacgacatcgaccttctcaacccgccggcagagctcgagaagctcaa 175

                            
Query: 120 gcacaagaagaagcgcc 136
           |||||||||||||||||
Sbjct: 176 gcacaagaagaagcgcc 192
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>ref|XM_472347.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 138

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                       
Query: 73  aacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaag 132
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 13  aacgacatcgacctgctgaacccgcccgcggagctggagaagctcaagcacaagaagaag 72

               
Query: 133 cgcc 136
           ||||
Sbjct: 73  cgcc 76
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>emb|AL731642.3|OSJN00289 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0014D23,
             complete sequence
          Length = 133759

 Score =  111 bits (56), Expect = 5e-22
 Identities = 62/64 (96%)
 Strand = Plus / Plus

                                                                         
Query: 73    aacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaag 132
             |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 9950  aacgacatcgacctgctgaacccgcccgcggagctggagaagctcaagcacaagaagaag 10009

                 
Query: 133   cgcc 136
             ||||
Sbjct: 10010 cgcc 10013
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>gb|AY781893.1| Saccharum hybrid cultivar isolate 32a2pro ribosomal protein S27
           genes, partial cds
          Length = 1945

 Score = 99.6 bits (50), Expect = 2e-18
 Identities = 65/70 (92%)
 Strand = Plus / Plus

                                                                       
Query: 67  ctgcagaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaag 126
           |||||||||||||||||| |||| ||||||||||| ||||| |||||||| |||||||||
Sbjct: 1   ctgcagaacgacatcgacttgctcaacccgccggcagagcttgagaagctaaagcacaag 60

                     
Query: 127 aagaagcgcc 136
           ||||||||||
Sbjct: 61  aagaagcgcc 70
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>ref|XM_465641.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 667

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                       
Query: 73  aacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaag 132
           |||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 125 aacgacatcgacctcctcaaccctcccgcggagctcgagaagctcaagcacaagaagaag 184

               
Query: 133 cgcc 136
           ||||
Sbjct: 185 cgcc 188
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                            
Query: 73       aacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaag 132
                |||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 16545726 aacgacatcgacctcctcaaccctcccgcggagctcgagaagctcaagcacaagaagaag 16545785

                    
Query: 133      cgcc 136
                ||||
Sbjct: 16545786 cgcc 16545789
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>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0527E02
          Length = 176826

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                          
Query: 73     aacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaag 132
              |||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 119141 aacgacatcgacctcctcaaccctcccgcggagctcgagaagctcaagcacaagaagaag 119200

                  
Query: 133    cgcc 136
              ||||
Sbjct: 119201 cgcc 119204
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>dbj|AK099723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089A06, full
           insert sequence
          Length = 667

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 60/64 (93%)
 Strand = Plus / Plus

                                                                       
Query: 73  aacgacatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaagaag 132
           |||||||||||||| || ||||| || |||||||||||||||||||||||||||||||||
Sbjct: 125 aacgacatcgacctcctcaaccctcccgcggagctcgagaagctcaagcacaagaagaag 184

               
Query: 133 cgcc 136
           ||||
Sbjct: 185 cgcc 188
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>gb|AY104604.1| Zea mays PCO122603 mRNA sequence
          Length = 618

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 60  gatggtgctgcagaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaa 119
           |||||| || ||||||||||| || ||||| ||||||||||| || ||||||||||||||
Sbjct: 113 gatggttctccagaacgacattgatctgctcaacccgccggcagaactcgagaagctcaa 172

                    
Query: 120 gcacaagaa 128
           |||||||||
Sbjct: 173 gcacaagaa 181
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>gb|AF111029.2|AF111029 Zea mays 40S ribosomal protein S27 homolog mRNA, complete cds
          Length = 572

 Score = 81.8 bits (41), Expect = 5e-13
 Identities = 62/69 (89%)
 Strand = Plus / Plus

                                                                       
Query: 60  gatggtgctgcagaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaa 119
           |||||| || ||||||||||| || ||||| ||||||||||| || ||||||||||||||
Sbjct: 82  gatggttctccagaacgacattgatctgctcaacccgccggcagaactcgagaagctcaa 141

                    
Query: 120 gcacaagaa 128
           |||||||||
Sbjct: 142 gcacaagaa 150
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>gb|BT017012.1| Zea mays clone EK07D2311A08.c mRNA sequence
          Length = 501

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 61/69 (88%)
 Strand = Plus / Plus

                                                                       
Query: 60  gatggtgctgcagaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaa 119
           |||||| || ||||||||||| || ||||| ||||||||||| || ||||||||||||||
Sbjct: 40  gatggttctccagaacgacattgatctgctcaacccgccggcagaactcgagaagctcaa 99

                    
Query: 120 gcacaagaa 128
           || ||||||
Sbjct: 100 gcccaagaa 108
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>gb|AY104498.1| Zea mays PCO122602 mRNA sequence
          Length = 671

 Score = 69.9 bits (35), Expect = 2e-09
 Identities = 65/75 (86%)
 Strand = Plus / Plus

                                                                       
Query: 60  gatggtgctgcagaacgacatcgacctgctgaacccgccggcggagctcgagaagctcaa 119
           |||||||||||| |||||||| ||| | || || || ||||| ||||| |||||||| ||
Sbjct: 96  gatggtgctgcaaaacgacattgacttactcaatccaccggcagagcttgagaagctaaa 155

                          
Query: 120 gcacaagaagaagcg 134
           |||||||||||||||
Sbjct: 156 gcacaagaagaagcg 170
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>gb|AY107723.1| Zea mays PCO067113 mRNA sequence
          Length = 1219

 Score = 58.0 bits (29), Expect = 7e-06
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                
Query: 77  acatcgacctgctgaacccgccggcggagctcgagaagctcaagcacaagaag 129
           |||||||||| |  ||||||||||| |||||  ||||||||||||||||||||
Sbjct: 635 acatcgaccttcccaacccgccggcagagcttaagaagctcaagcacaagaag 687
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>emb|AJ276024.1|MGA276024 Meleagris gallopavo partial mRNA for metallopanstimulin 1 (mps1
           gene)
          Length = 153

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 109 gagaagctcaagcacaagaagaagcgcc 136
           ||||||| ||||||||||||||||||||
Sbjct: 13  gagaagcgcaagcacaagaagaagcgcc 40
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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 44.1 bits (22), Expect = 0.10
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 51     gcctcccacgatggtgctgcag 72
              ||||||||||||||||||||||
Sbjct: 554766 gcctcccacgatggtgctgcag 554745
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>ref|XM_369161.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG00083.4) partial mRNA
          Length = 1143

 Score = 42.1 bits (21), Expect = 0.41
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 102 ggagctcgagaagctcaagcacaag 126
           ||||||||||||||||| |||||||
Sbjct: 855 ggagctcgagaagctcaggcacaag 879
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 103     gagctcgagaagctcaagca 122
               ||||||||||||||||||||
Sbjct: 3511912 gagctcgagaagctcaagca 3511893
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>gb|CP000027.1| Dehalococcoides ethenogenes 195, complete genome
          Length = 1469720

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 87      gctgaacccgccggcggag 105
               |||||||||||||||||||
Sbjct: 1317702 gctgaacccgccggcggag 1317720
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>gb|AY769343.1| Bombyx mori ribosomal protein S27A (RpS27A) mRNA, complete cds
          Length = 594

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 287 agaagatcaagcacaagaagaag 309
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>gb|DQ200392.1| Solanum tuberosum clone 068E12 ubiquitin extension protein-like
           protein mRNA, complete cds
          Length = 674

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 308 agaagatcaagcacaagaagaag 330
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>gb|BC075875.1| Danio rerio zgc:92062, mRNA (cDNA clone MGC:92062 IMAGE:7046210),
            complete cds
          Length = 1416

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 110  agaagctcaagcacaagaagaag 132
            ||||| |||||||||||||||||
Sbjct: 1293 agaagttcaagcacaagaagaag 1315
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>gb|DQ125483.1| Bombyx mori ubiquitin/ribosomal protein S27Ae fusion mRNA, complete
           cds
          Length = 615

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 310 agaagatcaagcacaagaagaag 332
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>ref|XM_547571.2| PREDICTED: Canis familiaris similar to 40S ribosomal protein
           S27-like protein (LOC490449), mRNA
          Length = 355

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 118 aagcacaagaagaagcgcc 136
           |||||||||||||||||||
Sbjct: 79  aagcacaagaagaagcgcc 97
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>ref|XM_755249.1| Ustilago maydis 521 hypothetical protein (UM04195.1) partial mRNA
          Length = 1266

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 107 tcgagaagctcaagcacaagaag 129
           |||| ||||||||||||||||||
Sbjct: 479 tcgacaagctcaagcacaagaag 501
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>ref|XM_755548.1| Ustilago maydis 521 hypothetical protein (UM04494.1) partial mRNA
          Length = 2448

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 101 cggagctcgagaagctcaa 119
           |||||||||||||||||||
Sbjct: 947 cggagctcgagaagctcaa 965
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>emb|AM040012.1| Cicindela campestris mRNA for ubiquitin/ribosomal protein S27Ae
           fusion protein (ubq/S27Ae gene)
          Length = 471

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 266 agaagatcaagcacaagaagaag 288
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>gb|AF297552.1| Blattella germanica circadian clock protein PERIOD mRNA, complete cds
          Length = 6121

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  tcaagcacaagaagaagcg 134
            |||||||||||||||||||
Sbjct: 3606 tcaagcacaagaagaagcg 3624
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>ref|XM_850032.1| PREDICTED: Canis familiaris similar to ribosomal protein S27
           (LOC612291), mRNA
          Length = 543

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 118 aagcacaagaagaagcgcc 136
           |||||||||||||||||||
Sbjct: 79  aagcacaagaagaagcgcc 97
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>emb|AM040016.1| Timarcha balearica mRNA for ubiquitin/ribosomal protein S27Ae
           fusion protein (ubq/S27Ae gene)
          Length = 471

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 266 agaagatcaagcacaagaagaag 288
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>emb|AM040014.1| Eucinetus sp. APV-2005 mRNA for ubiquitin/ribosomal protein S27Ae
           fusion protein (ubq/rpS27Ae gene)
          Length = 471

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 266 agaagatcaagcacaagaagaag 288
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 84      cctgctgaacccgccggcg 102
               |||||||||||||||||||
Sbjct: 1034207 cctgctgaacccgccggcg 1034225
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 64      gtgctgcagaacgacatcgacct 86
               ||||||||||| |||||||||||
Sbjct: 2076737 gtgctgcagaaggacatcgacct 2076759
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>emb|Z11669.1|STUQ10 S.tuberosum mRNA for ubiquitin monomer/ribosomal protein
          Length = 688

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 308 agaagatcaagcacaagaagaag 330
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>emb|Z18946.1|MLCGA Mycobacteriophage L5 complete genome
          Length = 52297

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 83    acctgctgaacccgccggc 101
             |||||||||||||||||||
Sbjct: 38873 acctgctgaacccgccggc 38855
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>emb|Y10024.1|STUBIEP Solanum tuberosum mRNA for ubiquitin extension protein
          Length = 646

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 309 agaagatcaagcacaagaagaag 331
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>gb|DQ445503.1| Graphocephala atropunctata isolate WHGA0105 putative
           ubiquitin/ribosomal protein S27Ae fusion protein mRNA,
           complete cds
          Length = 471

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 266 agaagatcaagcacaagaagaag 288
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>emb|X66875.1|AOULF A.officinalis mRNA for ubiquitin-long tail fusion
          Length = 640

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 160 agaagatcaagcacaagaagaag 182
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>emb|X58253.1|LEUBI3 Tomato ubi3 gene for ubiquitin
          Length = 2374

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 110  agaagctcaagcacaagaagaag 132
            ||||| |||||||||||||||||
Sbjct: 1653 agaagatcaagcacaagaagaag 1675
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>emb|X53524.1|MSUBIFUS Tobacco hawkmoth ubiquitin-fusion gene
          Length = 559

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 269 agaagatcaagcacaagaagaag 291
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>emb|BX569779.35| Zebrafish DNA sequence from clone CH211-113I9 in linkage group 11,
              complete sequence
          Length = 182464

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 110    agaagctcaagcacaagaagaag 132
              ||||| |||||||||||||||||
Sbjct: 141740 agaagttcaagcacaagaagaag 141718
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>ref|NM_001002382.1| Danio rerio zgc:92062 (zgc:92062), mRNA
          Length = 1416

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 110  agaagctcaagcacaagaagaag 132
            ||||| |||||||||||||||||
Sbjct: 1293 agaagttcaagcacaagaagaag 1315
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 36      cccgagcaagccctagcctccca 58
               |||||||| ||||||||||||||
Sbjct: 1656677 cccgagcatgccctagcctccca 1656655
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>gb|AC135565.18| Medicago truncatula clone mth2-19b12, complete sequence
          Length = 121647

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 108   cgagaagctcaagcacaag 126
             |||||||||||||||||||
Sbjct: 32948 cgagaagctcaagcacaag 32966
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>emb|AJ783765.1| Papilio dardanus mRNA for ubiquitin/ribosomal protein S27Ae fusion
           protein (ubq/rpS27Ae gene)
          Length = 468

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 266 agaagatcaagcacaagaagaag 288
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>gb|DQ116441.1| Gossypium hirsutum ubiquitin extension protein (UBQ7) mRNA,
           complete cds
          Length = 752

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 323 agaagatcaagcacaagaagaag 345
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>gb|AY066029.1| Branchiostoma belcheri tsingtaunese ubiquitin/ribosomal protein
           S27a fusion protein (Ubf80) mRNA, complete cds
          Length = 586

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 305 agaagatcaagcacaagaagaag 327
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>dbj|AB021973.1| Bombyx mori UBI2 mRNA for ubiquitin/79aa fusion protein, complete
           cds
          Length = 697

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 409 agaagatcaagcacaagaagaag 431
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>gb|AY072292.1| Spodoptera frugiperda ribosomal protein S27A mRNA, complete cds
          Length = 580

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 302 agaagatcaagcacaagaagaag 324
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>gb|AF298826.1|AF298826 Prunus avium ubiquitin/ribosomal protein 27a (Ubi) mRNA, complete
           cds
          Length = 1323

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 110 agaagctcaagcacaagaagaag 132
           ||||| |||||||||||||||||
Sbjct: 300 agaagatcaagcacaagaagaag 322
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>dbj|AP000642.5| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-55L24, complete
              sequences
          Length = 164036

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 110    agaagctcaagcacaagaa 128
              |||||||||||||||||||
Sbjct: 123961 agaagctcaagcacaagaa 123943
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>gb|L28008.1|WHTWALI Triticum aestivum (wali7) mRNA, 3' end, partial cds
          Length = 956

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 74  acgacatcgacctgctgaa 92
           |||||||||||||||||||
Sbjct: 508 acgacatcgacctgctgaa 526
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>gb|L22576.1|POTUBI3A Solanum tuberosum ubiquitin/ribosomal fusion protein (ubi3) gene,
            complete cds
          Length = 1567

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 110  agaagctcaagcacaagaagaag 132
            ||||| |||||||||||||||||
Sbjct: 1186 agaagatcaagcacaagaagaag 1208


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 755,499
Number of Sequences: 3902068
Number of extensions: 755499
Number of successful extensions: 56850
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56422
Number of HSP's gapped (non-prelim): 428
length of query: 136
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 115
effective length of database: 17,151,101,840
effective search space: 1972376711600
effective search space used: 1972376711600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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