ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16a22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK061461.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B10, full insert sequence Length = 1044 Score = 291 bits (147), Expect = 1e-75 Identities = 270/311 (86%) Strand = Plus / Plus Query: 13 ggactgcagcgacgccctgatcagcctggcggggtgcctgagctacgtgcaggaggggag 72 |||||||| ||||| ||| | ||||||||||| |||||||||||||||||||||||||| Sbjct: 431 ggactgcacggacgcgctgctgagcctggcgggttgcctgagctacgtgcaggaggggag 490 Query: 73 cacggtggcgacgccggaggagtcgtgctgctccgggctcaaggacgtggtgaggaagga 132 ||||||||||| ||| || | | |||||||||| |||||||||| |||||||| |||||| Sbjct: 491 cacggtggcgaagcccgacgcgccgtgctgctcggggctcaagggcgtggtgaagaagga 550 Query: 133 ggtggcctgcctctgccaggccttccagggcggccaggactacggcgtcgccctcaacat 192 ||||||||||||||||||||| ||||||||| ||||| ||| ||||||| | |||||||| Sbjct: 551 ggtggcctgcctctgccaggcgttccagggcagccagaacttcggcgtcacgctcaacat 610 Query: 193 gaccaaggccctgcagctgcccggcgcctgcaaggtcaagacgcctcccttcagcaagtg 252 ||||||||| || |||||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct: 611 gaccaaggcgctccagctgcccgccgcgtgcaaggtcaagacgccgccgttcagcaagtg 670 Query: 253 ccacatttccatcccgggtatgactggcgggtctccagcgcctgccccatcttccggtgc 312 |||| |||| || ||||| ||||||| || |||| || || || |||| ||||| || Sbjct: 671 ccacctttctattccgggcgtgactggtggtgctcctgctcccgctccattctccggggc 730 Query: 313 tccgttcttcg 323 ||||||||||| Sbjct: 731 tccgttcttcg 741
>dbj|AK105970.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E12, full insert sequence Length = 1074 Score = 287 bits (145), Expect = 2e-74 Identities = 253/289 (87%) Strand = Plus / Plus Query: 35 agcctggcggggtgcctgagctacgtgcaggaggggagcacggtggcgacgccggaggag 94 ||||||||||| ||||||||||||||||||||||||||||||||||||| ||| || | | Sbjct: 453 agcctggcgggttgcctgagctacgtgcaggaggggagcacggtggcgaagcccgacgcg 512 Query: 95 tcgtgctgctccgggctcaaggacgtggtgaggaaggaggtggcctgcctctgccaggcc 154 |||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct: 513 ccgtgctgctcggggctcaagggcgtggtgaagaaggaggtggcctgcctctgccaggcg 572 Query: 155 ttccagggcggccaggactacggcgtcgccctcaacatgaccaaggccctgcagctgccc 214 ||||||||| ||||| ||| ||||||| | ||||||||||||||||| || ||||||||| Sbjct: 573 ttccagggcagccagaacttcggcgtcacgctcaacatgaccaaggcgctccagctgccc 632 Query: 215 ggcgcctgcaaggtcaagacgcctcccttcagcaagtgccacatttccatcccgggtatg 274 | ||| ||||||||||||||||| || ||||||||||||||| |||| || ||||| || Sbjct: 633 gccgcgtgcaaggtcaagacgccgccgttcagcaagtgccacctttctattccgggcgtg 692 Query: 275 actggcgggtctccagcgcctgccccatcttccggtgctccgttcttcg 323 ||||| || |||| || || || |||| ||||| ||||||||||||| Sbjct: 693 actggtggtgctcctgctcccgctccattctccggggctccgttcttcg 741
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 278 bits (140), Expect = 2e-71 Identities = 218/244 (89%) Strand = Plus / Minus Query: 13 ggactgcagcgacgccctgatcagcctggcggggtgcctgagctacgtgcaggaggggag 72 |||||||| ||||| ||| | ||||||||||| |||||||||||||||||||||||||| Sbjct: 4803901 ggactgcacggacgcgctgctgagcctggcgggttgcctgagctacgtgcaggaggggag 4803842 Query: 73 cacggtggcgacgccggaggagtcgtgctgctccgggctcaaggacgtggtgaggaagga 132 ||||||||||| ||| || | | |||||||||| |||||||||| |||||||| |||||| Sbjct: 4803841 cacggtggcgaagcccgacgcgccgtgctgctcggggctcaagggcgtggtgaagaagga 4803782 Query: 133 ggtggcctgcctctgccaggccttccagggcggccaggactacggcgtcgccctcaacat 192 ||||||||||||||||||||| ||||||||| ||||| ||| ||||||| | |||||||| Sbjct: 4803781 ggtggcctgcctctgccaggcgttccagggcagccagaacttcggcgtcacgctcaacat 4803722 Query: 193 gaccaaggccctgcagctgcccggcgcctgcaaggtcaagacgcctcccttcagcaagtg 252 ||||||||| || |||||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct: 4803721 gaccaaggcgctccagctgcccgccgcgtgcaaggtcaagacgccgccgttcagcaagtg 4803662 Query: 253 ccac 256 |||| Sbjct: 4803661 ccac 4803658
>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0019D17, from chromosome 3, complete sequence Length = 129658 Score = 278 bits (140), Expect = 2e-71 Identities = 218/244 (89%) Strand = Plus / Plus Query: 13 ggactgcagcgacgccctgatcagcctggcggggtgcctgagctacgtgcaggaggggag 72 |||||||| ||||| ||| | ||||||||||| |||||||||||||||||||||||||| Sbjct: 31554 ggactgcacggacgcgctgctgagcctggcgggttgcctgagctacgtgcaggaggggag 31613 Query: 73 cacggtggcgacgccggaggagtcgtgctgctccgggctcaaggacgtggtgaggaagga 132 ||||||||||| ||| || | | |||||||||| |||||||||| |||||||| |||||| Sbjct: 31614 cacggtggcgaagcccgacgcgccgtgctgctcggggctcaagggcgtggtgaagaagga 31673 Query: 133 ggtggcctgcctctgccaggccttccagggcggccaggactacggcgtcgccctcaacat 192 ||||||||||||||||||||| ||||||||| ||||| ||| ||||||| | |||||||| Sbjct: 31674 ggtggcctgcctctgccaggcgttccagggcagccagaacttcggcgtcacgctcaacat 31733 Query: 193 gaccaaggccctgcagctgcccggcgcctgcaaggtcaagacgcctcccttcagcaagtg 252 ||||||||| || |||||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct: 31734 gaccaaggcgctccagctgcccgccgcgtgcaaggtcaagacgccgccgttcagcaagtg 31793 Query: 253 ccac 256 |||| Sbjct: 31794 ccac 31797
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 278 bits (140), Expect = 2e-71 Identities = 218/244 (89%) Strand = Plus / Minus Query: 13 ggactgcagcgacgccctgatcagcctggcggggtgcctgagctacgtgcaggaggggag 72 |||||||| ||||| ||| | ||||||||||| |||||||||||||||||||||||||| Sbjct: 4804016 ggactgcacggacgcgctgctgagcctggcgggttgcctgagctacgtgcaggaggggag 4803957 Query: 73 cacggtggcgacgccggaggagtcgtgctgctccgggctcaaggacgtggtgaggaagga 132 ||||||||||| ||| || | | |||||||||| |||||||||| |||||||| |||||| Sbjct: 4803956 cacggtggcgaagcccgacgcgccgtgctgctcggggctcaagggcgtggtgaagaagga 4803897 Query: 133 ggtggcctgcctctgccaggccttccagggcggccaggactacggcgtcgccctcaacat 192 ||||||||||||||||||||| ||||||||| ||||| ||| ||||||| | |||||||| Sbjct: 4803896 ggtggcctgcctctgccaggcgttccagggcagccagaacttcggcgtcacgctcaacat 4803837 Query: 193 gaccaaggccctgcagctgcccggcgcctgcaaggtcaagacgcctcccttcagcaagtg 252 ||||||||| || |||||||||| ||| ||||||||||||||||| || ||||||||||| Sbjct: 4803836 gaccaaggcgctccagctgcccgccgcgtgcaaggtcaagacgccgccgttcagcaagtg 4803777 Query: 253 ccac 256 |||| Sbjct: 4803776 ccac 4803773
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 52.0 bits (26), Expect = 0.002 Identities = 26/26 (100%) Strand = Plus / Plus Query: 463 ggccgcagccaccgtggcgacgacgc 488 |||||||||||||||||||||||||| Sbjct: 1749156 ggccgcagccaccgtggcgacgacgc 1749181
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 48.1 bits (24), Expect = 0.035 Identities = 27/28 (96%) Strand = Plus / Minus Query: 330 ccccgacgtccccgtcaccgtccgcacc 357 |||||||||| ||||||||||||||||| Sbjct: 400976 ccccgacgtctccgtcaccgtccgcacc 400949
>ref|XM_463623.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1182 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 404 gctccatcgccgtcggcctccgc 426 ||||||||||||||||||||||| Sbjct: 890 gctccatcgccgtcggcctccgc 912
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 404 gctccatcgccgtcggcctccgc 426 ||||||||||||||||||||||| Sbjct: 40133103 gctccatcgccgtcggcctccgc 40133081 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 30895764 ctccatcgccgtcggcctccgc 30895743 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 410 tcgccgtcggcctccgccgcagccgcctt 438 |||||||||||| ||||||| |||||||| Sbjct: 21734157 tcgccgtcggccgccgccgccgccgcctt 21734129
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 404 gctccatcgccgtcggcctccgc 426 ||||||||||||||||||||||| Sbjct: 76187 gctccatcgccgtcggcctccgc 76165
>dbj|AK066552.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K05, full insert sequence Length = 1419 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 404 gctccatcgccgtcggcctccgc 426 ||||||||||||||||||||||| Sbjct: 1006 gctccatcgccgtcggcctccgc 1028
>gb|AY110541.1| Zea mays CL4825_1 mRNA sequence Length = 837 Score = 46.1 bits (23), Expect = 0.14 Identities = 53/63 (84%) Strand = Plus / Plus Query: 175 cggcgtcgccctcaacatgaccaaggccctgcagctgcccggcgcctgcaaggtcaagac 234 |||| ||||| ||||| ||||| ||| ||| |||| ||||||| ||||||||||||| | Sbjct: 326 cggcatcgccatcaaccagaccagggcgctggagctccccggcgtctgcaaggtcaaggc 385 Query: 235 gcc 237 ||| Sbjct: 386 gcc 388
>ref|NM_191138.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2295 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 1795 ctccatcgccgtcggcctccgc 1774
>gb|AY496058.1| Triticum aestivum auxin transporter PIN1 mRNA, complete cds Length = 1764 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 1569 ctccatcgccgtcggcctccgc 1590
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 22905412 ctccatcgccgtcggcctccgc 22905433
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 6879223 ctccatcgccgtcggcctccgc 6879244
>dbj|AP002972.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0638D12 Length = 161277 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 96131 ctccatcgccgtcggcctccgc 96110
>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0479H10 Length = 139874 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 68748 ctccatcgccgtcggcctccgc 68769
>dbj|AK103208.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122I23, full insert sequence Length = 2470 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 1722 ctccatcgccgtcggcctccgc 1743
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 22833603 ctccatcgccgtcggcctccgc 22833624
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 14689 ctccatcgccgtcggcctccgc 14710
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 405 ctccatcgccgtcggcctccgc 426 |||||||||||||||||||||| Sbjct: 51432 ctccatcgccgtcggcctccgc 51411
>gb|AC102365.32| Mus musculus chromosome 3, clone RP23-111A11, complete sequence Length = 208259 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 gcctctgccaggccttccagg 161 ||||||||||||||||||||| Sbjct: 168019 gcctctgccaggccttccagg 167999
>ref|NM_193585.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 963 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 410 tcgccgtcggcctccgccgcagccgcctt 438 |||||||||||| ||||||| |||||||| Sbjct: 536 tcgccgtcggccgccgccgccgccgcctt 508
>gb|AC109262.13| Mus musculus chromosome 1, clone RP23-31H15, complete sequence Length = 241579 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 ttccagggcggccaggactac 175 ||||||||||||||||||||| Sbjct: 30825 ttccagggcggccaggactac 30805
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16 Length = 348074 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 ccaggccttccagggcggcca 168 ||||||||||||||||||||| Sbjct: 287318 ccaggccttccagggcggcca 287338
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14 Length = 344805 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 ccaggccttccagggcggcca 168 ||||||||||||||||||||| Sbjct: 231548 ccaggccttccagggcggcca 231568
>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12 Length = 348134 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 148 ccaggccttccagggcggcca 168 ||||||||||||||||||||| Sbjct: 87389 ccaggccttccagggcggcca 87409
>dbj|AP003141.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0002B05 Length = 141275 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 410 tcgccgtcggcctccgccgcagccgcctt 438 |||||||||||| ||||||| |||||||| Sbjct: 86208 tcgccgtcggccgccgccgccgccgcctt 86180
>gb|AC164590.12| Mus musculus chromosome 3, clone RP23-309N14, complete sequence Length = 206984 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 141 gcctctgccaggccttccagg 161 ||||||||||||||||||||| Sbjct: 58519 gcctctgccaggccttccagg 58499
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 catcgccgtcggcctccgccg 428 ||||||||||||||||||||| Sbjct: 2145290 catcgccgtcggcctccgccg 2145310
>emb|AL513351.26| Mouse DNA sequence from clone RP23-122P5 on chromosome 1, complete sequence Length = 224628 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ttccagggcggccaggactac 175 ||||||||||||||||||||| Sbjct: 71116 ttccagggcggccaggactac 71136
>gb|AY678264.1| Synthetic construct monomeric red fluorescent protein gene, complete cds Length = 711 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 tgcagctgcccggcgcctgcaaggtcaa 231 |||||||||||||||||| ||| ||||| Sbjct: 575 tgcagctgcccggcgcctacaacgtcaa 602
>ref|NM_197079.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029C15.21), mRNA Length = 816 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 410 tcgccgtcggcctccgccgcagccgcct 437 |||||||||||| ||||||| ||||||| Sbjct: 42 tcgccgtcggccgccgccgccgccgcct 15
>gb|AC153624.20| Mus musculus 6 BAC RP23-117P3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 224115 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 ctgcctctgccaggccttcc 158 |||||||||||||||||||| Sbjct: 220697 ctgcctctgccaggccttcc 220678
>gb|AC135420.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0060G17, complete sequence Length = 174949 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cagccaccgtggcgacgacg 487 |||||||||||||||||||| Sbjct: 873 cagccaccgtggcgacgacg 854
>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15, complete sequence Length = 162959 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cagccaccgtggcgacgacg 487 |||||||||||||||||||| Sbjct: 96058 cagccaccgtggcgacgacg 96039
>gb|AC122345.4| Mus musculus BAC clone RP23-366P9 from chromosome 6, complete sequence Length = 199923 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 ctgcctctgccaggccttcc 158 |||||||||||||||||||| Sbjct: 65191 ctgcctctgccaggccttcc 65172
>gb|AF496378.1| Lactobacillus delbrueckii subsp. lactis xanthine phosphoribosyltransferase gene, partial cds Length = 380 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 aggccttccagggcggccaggact 173 ||||||||||||||||||| |||| Sbjct: 304 aggccttccagggcggccacgact 327
>gb|AC091117.5| Homo sapiens chromosome 15 clone RP11-109D20 map 15q15, complete sequence Length = 181312 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 aggacgtggtgaggaaggaggtgg 137 |||||| ||||||||||||||||| Sbjct: 166553 aggacggggtgaggaaggaggtgg 166576
>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete sequence Length = 148816 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 410 tcgccgtcggcctccgccgcagccgcct 437 |||||||||||| ||||||| ||||||| Sbjct: 63965 tcgccgtcggccgccgccgccgccgcct 63938
>ref|XM_693139.1| PREDICTED: Danio rerio similar to Solute carrier organic anion transporter family, member 3a1 (LOC569735), mRNA Length = 1626 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 gttgttgctggctttgctgc 591 |||||||||||||||||||| Sbjct: 559 gttgttgctggctttgctgc 578
>ref|XM_684587.1| PREDICTED: Danio rerio similar to Solute carrier organic anion transporter family, member 3A1 (Solute carrier family 21, member 11) (Sodium-independent organic anion transporter D) (Organic anion transporting polypeptide D) (OATP-D) (Prostaglandin transporter subtype 2)... (LOC561180), partial mRNA Length = 1573 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 gttgttgctggctttgctgc 591 |||||||||||||||||||| Sbjct: 1489 gttgttgctggctttgctgc 1508
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 410 tcgccgtcggcctccgccgcagccgcct 437 |||||||||||| ||||||| ||||||| Sbjct: 17868076 tcgccgtcggccgccgccgccgccgcct 17868103
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 ccgccgcagccgccttcccc 442 |||||||||||||||||||| Sbjct: 12628236 ccgccgcagccgccttcccc 12628217
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 468 cagccaccgtggcgacgacg 487 |||||||||||||||||||| Sbjct: 7911283 cagccaccgtggcgacgacg 7911264
>gb|AF446141.1| Aegilops tauschii LZ-NBS-LRR class RGA, NBS-LRR class RGA, HCBT-like putative defense response protein, and putative alliin lyase genes, complete cds; and unknown genes Length = 106618 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 tcgccgtcggcctccgccgc 429 |||||||||||||||||||| Sbjct: 83394 tcgccgtcggcctccgccgc 83413
>dbj|AP005438.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1723_B06 Length = 136853 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 ccgccgcagccgccttcccc 442 |||||||||||||||||||| Sbjct: 112929 ccgccgcagccgccttcccc 112910
>dbj|AP004305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0492E07 Length = 143794 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 423 ccgccgcagccgccttcccc 442 |||||||||||||||||||| Sbjct: 2706 ccgccgcagccgccttcccc 2687
>ref|XM_552320.1| Anopheles gambiae str. PEST ENSANGP00000029516 (ENSANGG00000023484), partial mRNA Length = 509 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 371 ccagccggaagcggcgactccaccaccg 398 ||||||||||||| || ||||||||||| Sbjct: 464 ccagccggaagcgacggctccaccaccg 437
>emb|BX649578.14| Zebrafish DNA sequence from clone CH211-196L7 in linkage group 18, complete sequence Length = 211922 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 572 gttgttgctggctttgctgc 591 |||||||||||||||||||| Sbjct: 37046 gttgttgctggctttgctgc 37065
>gb|DQ322635.1| YFV replicon vector prME-def, complete sequence Length = 12687 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 204 tgcagctgcccggcgcctgcaaggtcaa 231 |||||||||||||||||| ||| ||||| Sbjct: 1081 tgcagctgcccggcgcctacaacgtcaa 1108
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 410 tcgccgtcggcctccgccgcagccgcct 437 |||||||||||| ||||||| ||||||| Sbjct: 17877329 tcgccgtcggccgccgccgccgccgcct 17877356
>dbj|AP005231.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-78G22, complete sequence Length = 102488 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 575 gttgctggctttgctgcctg 594 |||||||||||||||||||| Sbjct: 24714 gttgctggctttgctgcctg 24733 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,699,183 Number of Sequences: 3902068 Number of extensions: 4699183 Number of successful extensions: 102668 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101590 Number of HSP's gapped (non-prelim): 1078 length of query: 621 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 598 effective length of database: 17,143,297,704 effective search space: 10251692026992 effective search space used: 10251692026992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
