ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15l22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SOS_DROME (P26675) Protein son of sevenless 31 2.3
2ATM_HUMAN (Q13315) Serine-protein kinase ATM (EC 2.7.11.1) (Atax... 30 4.0
3NHX4_ARATH (Q8S397) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exch... 29 6.8
4AMPA_RICTY (Q68XM6) Probable cytosol aminopeptidase (EC 3.4.11.1... 29 8.9
5AMPA_RICPR (P27888) Cytosol aminopeptidase (EC 3.4.11.1) (Leucin... 29 8.9

>SOS_DROME (P26675) Protein son of sevenless|
          Length = 1596

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +2

Query: 194 LEKARQSETIKFSLYKNXXXXXXXXXEWKSKRKGVGIPLDESLKKMQHRGN 346
           LE ARQ   ++F +YKN          W  K K V  P    LK M+H  N
Sbjct: 831 LELARQLTLLEFEMYKNVKPSELVGSPWTKKDKEVKSP--NLLKIMKHTTN 879



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>ATM_HUMAN (Q13315) Serine-protein kinase ATM (EC 2.7.11.1) (Ataxia|
            telangiectasia mutated) (A-T, mutated)
          Length = 3056

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = +2

Query: 272  EWKSKRKGVGIPLDESLKKMQH 337
            +WK++RKG+ IP D+ + K+++
Sbjct: 2637 QWKTQRKGINIPADQPITKLKN 2658



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>NHX4_ARATH (Q8S397) Sodium/hydrogen exchanger 4 (Na(+)/H(+) exchanger 4)|
           (NHE-4)
          Length = 529

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -2

Query: 403 FLGETRIF-FVQTKALSLAFVSSVLHLL*RFIQWNPNSLSFGFPFYLDMVYVDLILI*RK 227
           F+ ET IF +V T AL              F +W  +SLSFG    +  V   L+L+ R 
Sbjct: 308 FIAETFIFLYVGTDALD-------------FTKWKTSSLSFGGTLGVSGVITALVLLGRA 354

Query: 226 LYRFTLS 206
            + F LS
Sbjct: 355 AFVFPLS 361



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>AMPA_RICTY (Q68XM6) Probable cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase)
          Length = 500

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 406 EEKFWIN*QC*IELTNLSSAYSTLMGSTLCFCFTN 510
           +EKF  N +C I++  L+ A +  +GST   CF+N
Sbjct: 362 QEKF--NPKCVIDVATLTGAITVALGSTYAGCFSN 394



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>AMPA_RICPR (P27888) Cytosol aminopeptidase (EC 3.4.11.1) (Leucine|
           aminopeptidase) (LAP) (Leucyl aminopeptidase)
          Length = 500

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 406 EEKFWIN*QC*IELTNLSSAYSTLMGSTLCFCFTN 510
           +EKF  N +C I++  L+ A +  +GST   CF+N
Sbjct: 362 QEKF--NPKCVIDVATLTGAITVALGSTYAGCFSN 394


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,254,025
Number of Sequences: 219361
Number of extensions: 851251
Number of successful extensions: 1413
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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