ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags15l20 |
|---|---|
| Clone Library Name | barley_pub |
>LRAT_HUMAN (O95237) Lecithin retinol acyltransferase (EC 2.3.1.135)| (Phosphatidylcholine--retinol O-acyltransferase) Length = 230 Score = 33.5 bits (75), Expect = 0.58 Identities = 17/36 (47%), Positives = 20/36 (55%) Frame = +2 Query: 278 SEAVVRRAMHLLQNGFGNYDIFEKNCEDFALYCKTG 385 +E V RRA LL GF Y + NCE F YC+ G Sbjct: 138 NEEVARRAEKLL--GFTPYSLLWNNCEHFVTYCRYG 171
>NCKX2_RAT (O54701) Sodium/potassium/calcium exchanger 2 precursor| (Na(+)/K(+)/Ca(2+)-exchange protein 2) (Retinal cone Na-Ca+K exchanger) Length = 670 Score = 32.0 bits (71), Expect = 1.7 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%) Frame = -2 Query: 183 LPRKQSKQVSTTPLSSS*KP-QSGNVGHSDEAREIRPEMEFDESED 49 LP S +V TP S + +P Q+GN+ HS EA + E E +D Sbjct: 419 LPNSTSTEVEMTPSSEASEPVQNGNLSHSIEAADAPQATETAEEDD 464
>RYR2_RABIT (P30957) Ryanodine receptor 2 (Cardiac muscle-type ryanodine| receptor) (RyR2) (RYR-2) (Cardiac muscle ryanodine receptor-calcium release channel) Length = 4969 Score = 31.2 bits (69), Expect = 2.9 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = -1 Query: 643 RFRIFRTAET-EVRWQVFHLHFGHILSYSYVGDVSTGTVHPGCDGGHSQRTGSENLEWGG 467 RFRIFR +T V+ ++ F + S GD+ G PGC + + G Sbjct: 1084 RFRIFRAEKTYAVKAGRWYFEFEAVTS----GDMRVGWSRPGCQPDQELGSDERAFAFDG 1139 Query: 466 QKSCQWH 446 K+ +WH Sbjct: 1140 FKAQRWH 1146
>BSN_MOUSE (O88737) Bassoon protein| Length = 3941 Score = 30.4 bits (67), Expect = 4.9 Identities = 13/28 (46%), Positives = 18/28 (64%) Frame = +3 Query: 201 LSMECHQQFSLQNFVGEPAPLPNPTHQR 284 L + C + L+ +GEPAPLP PT Q+ Sbjct: 509 LCLNCQTKRLLEGSLGEPAPLPLPTPQQ 536
>POL1_BAYMG (Q04574) Genome polyprotein 1 [Contains: Protein P3; 6 kDa protein| 1 (6K1); Cytoplasmic inclusion protein (CI); 6 kDa protein 2 (6K2); Viral genome-linked protein (VPg); Nuclear inclusion protein A (EC 3.4.22.44) (NI-a) (NIa) (NIa-pro); Nuclea Length = 2412 Score = 30.4 bits (67), Expect = 4.9 Identities = 16/40 (40%), Positives = 22/40 (55%) Frame = -2 Query: 483 ILNGVDRRAASGTPMAEDACPLTPMPGSSTGTSPVLQ*SA 364 + V RR + TPMAE+ P +PM S+ +P L SA Sbjct: 5 LAQAVSRRGKTNTPMAEERKPFSPMNFSANFVAPELFYSA 44
>CEA9_ECOLI (P09883) Colicin-E9 (EC 3.1.-.-)| Length = 582 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -1 Query: 568 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 434 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGIGVSGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>BSN_RAT (O88778) Bassoon protein| Length = 3937 Score = 30.0 bits (66), Expect = 6.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = +3 Query: 201 LSMECHQQFSLQNFVGEPAPLPNPTHQ 281 L + C + L+ +GEPAPLP PT Q Sbjct: 507 LCLNCQTKRLLEGSLGEPAPLPLPTPQ 533
>SYNJ2_RAT (O55207) Synaptojanin-2 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 2) Length = 1496 Score = 30.0 bits (66), Expect = 6.4 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Frame = -2 Query: 525 PAVTVAIPSGPAAKILN---GVDRRAASGTPMAEDACPLTPMPGSSTGTSP 382 P +T IP P + GV+RR + G P +DA P+T S+ +P Sbjct: 1281 PPITAPIPPVPKPRTFQPGRGVERRPSGGKPEPDDAPPVTGAVELSSPEAP 1331
>RYR2_HUMAN (Q92736) Ryanodine receptor 2 (Cardiac muscle-type ryanodine| receptor) (RyR2) (RYR-2) (Cardiac muscle ryanodine receptor-calcium release channel) (hRYR-2) Length = 4967 Score = 30.0 bits (66), Expect = 6.4 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = -1 Query: 643 RFRIFRTAET-EVRWQVFHLHFGHILSYSYVGDVSTGTVHPGCDGGHSQRTGSENLEWGG 467 RFRIFR +T V+ ++ F + + GD+ G PGC + + G Sbjct: 1084 RFRIFRAEKTYAVKAGRWYFEFETVTA----GDMRVGWSRPGCQPDQELGSDERAFAFDG 1139 Query: 466 QKSCQWH 446 K+ +WH Sbjct: 1140 FKAQRWH 1146
>SLYD_SHIFL (P0A9L2) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -1 Query: 529 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 434 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>SLYD_ECOLI (P0A9K9) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -1 Query: 529 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 434 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>SLYD_ECOL6 (P0A9L0) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -1 Query: 529 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 434 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>SLYD_ECO57 (P0A9L1) FKBP-type peptidyl-prolyl cis-trans isomerase slyD (EC| 5.2.1.8) (PPIase) (Rotamase) (Histidine-rich protein) (WHP) Length = 196 Score = 29.6 bits (65), Expect = 8.3 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -1 Query: 529 HPGCDGGHSQRTGSENLEWGGQKSCQWHANGG 434 H GC GGH G E+ GG+ C NGG Sbjct: 164 HDGCCGGHGHDHGHEH---GGEGCCGGKGNGG 192
>NADD_RHOBA (Q7UFN6) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 214 Score = 29.6 bits (65), Expect = 8.3 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -3 Query: 137 PAENHSLGMLGTLMKPVRSGQRWSLMNLKIQLP 39 P NH +G+LG PV G W + QLP Sbjct: 8 PQSNHGIGILGGSFDPVHVGHLWMAESALEQLP 40
>LRAT_BOVIN (Q9BGL2) Lecithin retinol acyltransferase (EC 2.3.1.135)| (Phosphatidylcholine--retinol O-acyltransferase) Length = 230 Score = 29.6 bits (65), Expect = 8.3 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 278 SEAVVRRAMHLLQNGFGNYDIFEKNCEDFALYCKTG 385 +E V +RA LL G Y + NCE F YC+ G Sbjct: 138 NEEVAQRAEKLL--GITPYSLLWNNCEHFVTYCRYG 171
>YEG9_SCHPO (O13991) Hypothetical oxidoreductase C26H5.09c (EC 1.-.-.-)| Length = 369 Score = 29.6 bits (65), Expect = 8.3 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 2/97 (2%) Frame = +2 Query: 206 YGVPPAIF-LAKFRGGTCTIAQSDPSEAVVRRAMHLLQNG-FGNYDIFEKNCEDFALYCK 379 YG +F LAK + T+ Q+ + A ++NG G FE + + F L+ K Sbjct: 105 YGEAKELFDLAKSKNLMLTVYQNRRFDGDFLTAKECIENGRLGEVVQFESHIDRFRLFRK 164 Query: 380 TGLVPVDEPGIGVSGQASSAIGVPLAALLSTPFKIFA 490 V PG G+ S + L TP + A Sbjct: 165 GNWKDVPNPGCGLVYDLGSHLIDQAITLFGTPHSVTA 201
>CADA_STAAR (Q6GIX1) Probable cadmium-transporting ATPase (EC 3.6.3.3) (Cadmium| efflux ATPase) Length = 726 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +2 Query: 422 GQASSAIGVPLAALLSTPFKIFAAGPLGMATVTAGMYCAGRYITDIGVRKDVA 580 G A +G P A ++STP I +A +G A + G Y+ ++G K +A Sbjct: 362 GLAVLVVGCPCALVISTPISIVSA--IGNAAKKGVLIKGGVYLEELGAIKAIA 412
>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)| Length = 3925 Score = 29.6 bits (65), Expect = 8.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +3 Query: 201 LSMECHQQFSLQNFVGEPAPLPNPTHQR 284 L + C + L+ +GEP PLP PT Q+ Sbjct: 510 LCLNCQTKRLLEGSLGEPTPLPPPTSQQ 537
>CADA_BACPF (P30336) Probable cadmium-transporting ATPase (EC 3.6.3.3) (Cadmium| efflux ATPase) Length = 723 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +2 Query: 422 GQASSAIGVPLAALLSTPFKIFAAGPLGMATVTAGMYCAGRYITDIGVRKDVA 580 G A +G P A ++STP I +A +G A + G Y+ ++G K +A Sbjct: 360 GLAVLVVGCPCALVISTPISIVSA--IGNAAKKGVLVKGGVYLEEMGALKAIA 410
>GCNT1_HUMAN (Q02742) Beta-1,3-galactosyl-O-glycosyl-glycoprotein| beta-1,6-N-acetylglucosaminyltransferase (EC 2.4.1.102) (Core 2 branching enzyme) (Core2-GlcNAc-transferase) (C2GNT) (Core 2 GNT) Length = 428 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%) Frame = -1 Query: 610 VRWQVFHLHFGHILSYSYVGDVSTGTVHPGCDGGHSQRT---GSENLEW 473 V+WQ F GDVS G +P CDG H + G+ +L W Sbjct: 354 VKWQYFE------------GDVSKGAPYPPCDGVHVRSVCIFGAGDLNW 390
>CEA6_ECOLI (P17999) Colicin-E6 (EC 3.1.-.-) (Ribonuclease)| Length = 551 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -1 Query: 568 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 434 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>CEA3_ECOLI (P00646) Colicin-E3 (EC 3.1.-.-) (Colicin-E3 A chain)| (Ribonuclease) Length = 551 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -1 Query: 568 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 434 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59
>CEA2_ECOLI (P04419) Colicin-E2 (EC 3.1.-.-)| Length = 581 Score = 29.6 bits (65), Expect = 8.3 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = -1 Query: 568 SYSYVGDVSTGTVHPGCDGGHSQRTG--SENLEWGGQKSCQWHANGG 434 ++S G+++ G G GG S +G SEN WGG H GG Sbjct: 13 AHSTSGNINGGPTGLGVGGGASDGSGWSSENNPWGGGSGSGIHWGGG 59 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 112,476,782 Number of Sequences: 219361 Number of extensions: 2707463 Number of successful extensions: 8433 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 7982 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8427 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
