>TPPC1_MOUSE (Q5NCF2) Trafficking protein particle complex subunit 1|
          Length = 145

 Score = 79.7 bits (195), Expect = 6e-15
 Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
 Frame = -1

Query: 559 FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYS-LYVEYVVKNPLYAPGSP 383
           F SF+T+ YKL+Y E+P+GIK+++ T    G  RD L HIYS LYVE+VVKNPL   G  
Sbjct: 61  FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120

Query: 382 IKCDLFNKHLDQYVKTL 332
           ++ +LF   LD YV++L
Sbjct: 121 VQSELFRSRLDSYVRSL 137

>TPPC1_HUMAN (Q9Y5R8) Trafficking protein particle complex subunit 1 (BET5|
           homolog) (Multiple myeloma protein 2) (MUM-2)
          Length = 145

 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 39/77 (50%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
 Frame = -1

Query: 559 FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYS-LYVEYVVKNPLYAPGSP 383
           F +F+T+ YKL+Y E+P+GIK+++ T    G  RD L HIYS LYVE VVKNPL   G  
Sbjct: 61  FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120

Query: 382 IKCDLFNKHLDQYVKTL 332
           ++ +LF   LD YV++L
Sbjct: 121 VQSELFRSRLDSYVRSL 137

>BET5_SCHPO (Q9UT70) Transport protein particle subunit bet5|
          Length = 155

 Score = 67.0 bits (162), Expect = 4e-11
 Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 7/83 (8%)
 Frame = -1

Query: 559 FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIY-SLYVEYVVKNPLYAPGSP 383
           F S+ T+ YKL++ E+P+ ++LI +T+P+       L+ IY +LYVE+VVK+PLY    P
Sbjct: 70  FMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFVVKHPLYTHVPP 129

Query: 382 ------IKCDLFNKHLDQYVKTL 332
                 I C++F   LD++V+TL
Sbjct: 130 SAEEGGINCEIFRITLDRFVRTL 152

>TPPC4_MOUSE (Q9ES56) Trafficking protein particle complex subunit 4 (Synbindin)|
           (TRS23 homolog)
          Length = 219

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = -1

Query: 595 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 419
           +G+ L P QG S     +T+T+KL+  ++ +GIK ++L  PR       L+ IY +Y ++
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180

Query: 418 VVKNPLYAPGSPIKCDLFNKHL 353
            +KNP Y+   PI+C+LF+++L
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202

>TPPC4_HUMAN (Q9Y296) Trafficking protein particle complex subunit 4 (Synbindin)|
           (TRS23 homolog) (Hematopoietic stem/progenitor cell
           protein 172)
          Length = 219

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
 Frame = -1

Query: 595 LGAPLLPGQGCS-FHSFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYSLYVEY 419
           +G+ L P QG S     +T+T+KL+  ++ +GIK ++L  PR       L+ IY +Y ++
Sbjct: 121 IGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIYEIYSDF 180

Query: 418 VVKNPLYAPGSPIKCDLFNKHL 353
            +KNP Y+   PI+C+LF+++L
Sbjct: 181 ALKNPFYSLEMPIRCELFDQNL 202

>TRS23_YEAST (Q03784) Transport protein particle 23 kDa subunit (TRAPP 23 kDa|
           subunit)
          Length = 219

 Score = 37.0 bits (84), Expect = 0.044
 Identities = 15/40 (37%), Positives = 28/40 (70%)
 Frame = -1

Query: 451 LKHIYSLYVEYVVKNPLYAPGSPIKCDLFNKHLDQYVKTL 332
           L+ +Y LY +YV+K+P Y+   PI+ +LF++ + + V+ L
Sbjct: 179 LRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218

>TPPC2_MOUSE (Q9CQP2) Trafficking protein particle complex protein 2 (Sedlin)|
          Length = 140

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -1

Query: 547 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 380
           K N + ++   +   ++ I+L   R   Q D +K+    +Y LY+++ + NP Y P SPI
Sbjct: 66  KFNEWFVSAFVTAGHMRFIMLHDVR---QEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPI 121

Query: 379 KCDLFNK 359
           +   F++
Sbjct: 122 RSSAFDR 128

>TPPC2_HUMAN (O14582) Trafficking protein particle complex protein 2 (Sedlin)|
           (MBP-1-interacting protein 2A) (MIP-2A)
          Length = 140

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = -1

Query: 547 KTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKH----IYSLYVEYVVKNPLYAPGSPI 380
           K N + ++   +   ++ I+L   R   Q D +K+    +Y LY+++ + NP Y P SPI
Sbjct: 66  KFNEWFVSAFVTAGHMRFIMLHDIR---QEDGIKNFFTDVYDLYIKFSM-NPFYEPNSPI 121

Query: 379 KCDLFNK 359
           +   F++
Sbjct: 122 RSSAFDR 128

>DCAM_TRYBB (P50244) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 370

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 583 LLPGQGCSFHSFKTNTYKLNYMESPSGI 500
           + P + CSF S++TNT  LNY +   G+
Sbjct: 263 ITPEEHCSFASYETNTCALNYSKCICGV 290

>BET5_YEAST (Q03630) Transport protein particle 18 kDa subunit (TRAPP 18 kDa|
           subunit)
          Length = 159

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -1

Query: 553 SFKTNTYKLNYMESPSGIKLILLTHPRTGDQRDALKHIYS-LYVEYVVKNPL 401
           S  T  Y+++   + SG+  +LL+  +       L++IYS +YV+YV  N L
Sbjct: 69  SISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLL 120

>PPARG_XENLA (P37234) Peroxisome proliferator-activated receptor gamma|
           (PPAR-gamma)
          Length = 477

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 481 HPRTGDQRDALKHIYSLYVEYVVKNPLYAPGSP 383
           +P + DQR   KH+Y  YV+        APG P
Sbjct: 207 NPESADQRVLAKHLYDSYVKSFPLTKAKAPGHP 239

>ABC3G_LAGLA (Q694B8) DNA dC->dU-editing enzyme APOBEC-3G (EC 3.5.4.-)|
          Length = 381

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 388 CREHTEDFLQHTPHIGCRYASAHLVDHQ 471
           C E   +FLQ  PH+    ++A + D+Q
Sbjct: 288 CAEKVAEFLQENPHVNLHISAARIYDYQ 315

>MPRF_STAAR (Q6GH45) Probable lysylphosphatidylglycerol synthetase (LPG|
           synthetase) (Multiple peptide resistance factor)
          Length = 840

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -2

Query: 201 IILFVEKFVASRMIQTCLVQKWSR*ISLYCTLAACIDGLVYRLRFEAIHSXHCPVIYTLH 22
           + LF+  F+   M++     K +R + LYCTL +C++ L       A+    C VI  +H
Sbjct: 172 VSLFLPLFIIYSMVRP--PDKNNRYVGLYCTLVSCVEWLA-----AAVVLYFCGVIVDVH 224


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,515,905
Number of Sequences: 219361
Number of extensions: 1851739
Number of successful extensions: 4443
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4439
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)