ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags16a05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 151 bits (76), Expect = 3e-33 Identities = 334/418 (79%), Gaps = 9/418 (2%) Strand = Plus / Plus Query: 153 gcacaccgatgcagaattcatcctttgactactctgttccgagcacaccgatgcagaagt 212 ||||||| ||||||| ||| |||||| ||||||||||| || |||||||||||||| | Sbjct: 30504691 gcacacccttgcagaaatcagtctttgattactctgttcctagtacaccgatgcagaaat 30504750 Query: 213 cactcttcgactcttctgttccaagtacaccgatgcaaagatcactctttgattcttcta 272 || | || || | |||||| |||||||| || |||| | ||||||||||||||| Sbjct: 30504751 cagtgtttgattattctgtcccaagtacgccattgcagaagtcactctttgattctg--- 30504807 Query: 273 tgcccagcacgccgatgcagaaatcactgtttgattcctctgttccaagcacaccaatgc 332 | ||||| || || |||||||||||| | |||||||| ||| ||||| || || |||| Sbjct: 30504808 tccccagtactccaatgcagaaatcagtatttgattc---tgtaccaagtactcctatgc 30504864 Query: 333 agaattcattctatgactcttttccgagcacgccaatgcagggttcactctttgattctg 392 |||| || || | |||||||||||| ||||| || |||||| | ||||| |||||||||| Sbjct: 30504865 agaactctttgtttgactcttttccaagcaccccgatgcagagatcactgtttgattctg 30504924 Query: 393 gtccaggcagagtggaatctcctacggccgggagcacctatggtggcggtcagcagaagg 452 | ||| |||||| ||||||||||| ||| | |||| || |||| |||| | || Sbjct: 30504925 gcccaagcagagcagaatctcctactgccagcagcatata---tggcaaagagcaaaggg 30504981 Query: 453 gattctttgactcttccgttccaagcacgccgatgtataactccagcttctcgccaaggt 512 | |||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| ||||| | Sbjct: 30504982 gtttctttgattcttctgttcccagcacaccaatgtacaactctagcttctcaccaagat 30505041 Query: 513 acagcgaagccggggacgacagctcgttcgacactttctcccagatggactcctttgg 570 | |||||||| || |||||||| || |||||||| ||||| ||||||||||| ||||| Sbjct: 30505042 atagcgaagctggagacgacagttcattcgacaccttctcgcagatggactcatttgg 30505099 Score = 105 bits (53), Expect = 2e-19 Identities = 136/164 (82%) Strand = Plus / Plus Query: 56 tttgattctgtcccaggcaccccaatggagaagtcgntatttgattctgtcccaggcact 115 ||||||||||||||||| || ||| |||||||| | | |||||||||||||||||||| Sbjct: 30504636 tttgattctgtcccaggtactccagtggagaagcctttctttgattctgtcccaggcaca 30504695 Query: 116 ccactacagaaatcagtcttcgattattccgtccctagcacaccgatgcagaattcatcc 175 || | |||||||||||||| ||||| || || ||||| |||||||||||||| ||| Sbjct: 30504696 cccttgcagaaatcagtctttgattactctgttcctagtacaccgatgcagaaatcagtg 30504755 Query: 176 tttgactactctgttccgagcacaccgatgcagaagtcactctt 219 ||||| || ||||| || || || || |||||||||||||||| Sbjct: 30504756 tttgattattctgtcccaagtacgccattgcagaagtcactctt 30504799 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 1 ggaacagaaaccgatgtttgattctgtcccaggcaccccaatggagaagtcgttatttga 60 |||||||||||| | ||||||||||||||||| || ||| |||||||| | || ||||| Sbjct: 30504620 ggaacagaaaccattctttgattctgtcccaggtactccagtggagaagcctttctttga 30504679 Query: 61 ttctgtcccaggcac 75 ||||||||||||||| Sbjct: 30504680 ttctgtcccaggcac 30504694 Score = 44.1 bits (22), Expect = 0.53 Identities = 69/85 (81%) Strand = Plus / Plus Query: 21 attctgtcccaggcaccccaatggagaagtcgttatttgattctgtcccaggcaccccaa 80 ||||||||||| | || ||| || ||||||| | |||||||||||||| | || |||| Sbjct: 30504763 attctgtcccaagtacgccattgcagaagtcactctttgattctgtccccagtactccaa 30504822 Query: 81 tggagaagtcgntatttgattctgt 105 || |||| || ||||||||||||| Sbjct: 30504823 tgcagaaatcagtatttgattctgt 30504847 Score = 44.1 bits (22), Expect = 0.53 Identities = 60/73 (82%) Strand = Plus / Plus Query: 60 attctgtcccaggcaccccaatggagaagtcgntatttgattctgtcccaggcactccac 119 ||||||||||| | || ||| || ||||||| | |||||||||||||| | |||||| Sbjct: 30504763 attctgtcccaagtacgccattgcagaagtcactctttgattctgtccccagtactccaa 30504822 Query: 120 tacagaaatcagt 132 | ||||||||||| Sbjct: 30504823 tgcagaaatcagt 30504835
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0069C14 Length = 150579 Score = 151 bits (76), Expect = 3e-33 Identities = 334/418 (79%), Gaps = 9/418 (2%) Strand = Plus / Plus Query: 153 gcacaccgatgcagaattcatcctttgactactctgttccgagcacaccgatgcagaagt 212 ||||||| ||||||| ||| |||||| ||||||||||| || |||||||||||||| | Sbjct: 3254 gcacacccttgcagaaatcagtctttgattactctgttcctagtacaccgatgcagaaat 3313 Query: 213 cactcttcgactcttctgttccaagtacaccgatgcaaagatcactctttgattcttcta 272 || | || || | |||||| |||||||| || |||| | ||||||||||||||| Sbjct: 3314 cagtgtttgattattctgtcccaagtacgccattgcagaagtcactctttgattctg--- 3370 Query: 273 tgcccagcacgccgatgcagaaatcactgtttgattcctctgttccaagcacaccaatgc 332 | ||||| || || |||||||||||| | |||||||| ||| ||||| || || |||| Sbjct: 3371 tccccagtactccaatgcagaaatcagtatttgattc---tgtaccaagtactcctatgc 3427 Query: 333 agaattcattctatgactcttttccgagcacgccaatgcagggttcactctttgattctg 392 |||| || || | |||||||||||| ||||| || |||||| | ||||| |||||||||| Sbjct: 3428 agaactctttgtttgactcttttccaagcaccccgatgcagagatcactgtttgattctg 3487 Query: 393 gtccaggcagagtggaatctcctacggccgggagcacctatggtggcggtcagcagaagg 452 | ||| |||||| ||||||||||| ||| | |||| || |||| |||| | || Sbjct: 3488 gcccaagcagagcagaatctcctactgccagcagcatata---tggcaaagagcaaaggg 3544 Query: 453 gattctttgactcttccgttccaagcacgccgatgtataactccagcttctcgccaaggt 512 | |||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| ||||| | Sbjct: 3545 gtttctttgattcttctgttcccagcacaccaatgtacaactctagcttctcaccaagat 3604 Query: 513 acagcgaagccggggacgacagctcgttcgacactttctcccagatggactcctttgg 570 | |||||||| || |||||||| || |||||||| ||||| ||||||||||| ||||| Sbjct: 3605 atagcgaagctggagacgacagttcattcgacaccttctcgcagatggactcatttgg 3662 Score = 105 bits (53), Expect = 2e-19 Identities = 136/164 (82%) Strand = Plus / Plus Query: 56 tttgattctgtcccaggcaccccaatggagaagtcgntatttgattctgtcccaggcact 115 ||||||||||||||||| || ||| |||||||| | | |||||||||||||||||||| Sbjct: 3199 tttgattctgtcccaggtactccagtggagaagcctttctttgattctgtcccaggcaca 3258 Query: 116 ccactacagaaatcagtcttcgattattccgtccctagcacaccgatgcagaattcatcc 175 || | |||||||||||||| ||||| || || ||||| |||||||||||||| ||| Sbjct: 3259 cccttgcagaaatcagtctttgattactctgttcctagtacaccgatgcagaaatcagtg 3318 Query: 176 tttgactactctgttccgagcacaccgatgcagaagtcactctt 219 ||||| || ||||| || || || || |||||||||||||||| Sbjct: 3319 tttgattattctgtcccaagtacgccattgcagaagtcactctt 3362 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 1 ggaacagaaaccgatgtttgattctgtcccaggcaccccaatggagaagtcgttatttga 60 |||||||||||| | ||||||||||||||||| || ||| |||||||| | || ||||| Sbjct: 3183 ggaacagaaaccattctttgattctgtcccaggtactccagtggagaagcctttctttga 3242 Query: 61 ttctgtcccaggcac 75 ||||||||||||||| Sbjct: 3243 ttctgtcccaggcac 3257 Score = 44.1 bits (22), Expect = 0.53 Identities = 69/85 (81%) Strand = Plus / Plus Query: 21 attctgtcccaggcaccccaatggagaagtcgttatttgattctgtcccaggcaccccaa 80 ||||||||||| | || ||| || ||||||| | |||||||||||||| | || |||| Sbjct: 3326 attctgtcccaagtacgccattgcagaagtcactctttgattctgtccccagtactccaa 3385 Query: 81 tggagaagtcgntatttgattctgt 105 || |||| || ||||||||||||| Sbjct: 3386 tgcagaaatcagtatttgattctgt 3410 Score = 44.1 bits (22), Expect = 0.53 Identities = 60/73 (82%) Strand = Plus / Plus Query: 60 attctgtcccaggcaccccaatggagaagtcgntatttgattctgtcccaggcactccac 119 ||||||||||| | || ||| || ||||||| | |||||||||||||| | |||||| Sbjct: 3326 attctgtcccaagtacgccattgcagaagtcactctttgattctgtccccagtactccaa 3385 Query: 120 tacagaaatcagt 132 | ||||||||||| Sbjct: 3386 tgcagaaatcagt 3398
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017G10 Length = 166700 Score = 151 bits (76), Expect = 3e-33 Identities = 334/418 (79%), Gaps = 9/418 (2%) Strand = Plus / Plus Query: 153 gcacaccgatgcagaattcatcctttgactactctgttccgagcacaccgatgcagaagt 212 ||||||| ||||||| ||| |||||| ||||||||||| || |||||||||||||| | Sbjct: 142052 gcacacccttgcagaaatcagtctttgattactctgttcctagtacaccgatgcagaaat 142111 Query: 213 cactcttcgactcttctgttccaagtacaccgatgcaaagatcactctttgattcttcta 272 || | || || | |||||| |||||||| || |||| | ||||||||||||||| Sbjct: 142112 cagtgtttgattattctgtcccaagtacgccattgcagaagtcactctttgattctg--- 142168 Query: 273 tgcccagcacgccgatgcagaaatcactgtttgattcctctgttccaagcacaccaatgc 332 | ||||| || || |||||||||||| | |||||||| ||| ||||| || || |||| Sbjct: 142169 tccccagtactccaatgcagaaatcagtatttgattc---tgtaccaagtactcctatgc 142225 Query: 333 agaattcattctatgactcttttccgagcacgccaatgcagggttcactctttgattctg 392 |||| || || | |||||||||||| ||||| || |||||| | ||||| |||||||||| Sbjct: 142226 agaactctttgtttgactcttttccaagcaccccgatgcagagatcactgtttgattctg 142285 Query: 393 gtccaggcagagtggaatctcctacggccgggagcacctatggtggcggtcagcagaagg 452 | ||| |||||| ||||||||||| ||| | |||| || |||| |||| | || Sbjct: 142286 gcccaagcagagcagaatctcctactgccagcagcatata---tggcaaagagcaaaggg 142342 Query: 453 gattctttgactcttccgttccaagcacgccgatgtataactccagcttctcgccaaggt 512 | |||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| ||||| | Sbjct: 142343 gtttctttgattcttctgttcccagcacaccaatgtacaactctagcttctcaccaagat 142402 Query: 513 acagcgaagccggggacgacagctcgttcgacactttctcccagatggactcctttgg 570 | |||||||| || |||||||| || |||||||| ||||| ||||||||||| ||||| Sbjct: 142403 atagcgaagctggagacgacagttcattcgacaccttctcgcagatggactcatttgg 142460 Score = 105 bits (53), Expect = 2e-19 Identities = 136/164 (82%) Strand = Plus / Plus Query: 56 tttgattctgtcccaggcaccccaatggagaagtcgntatttgattctgtcccaggcact 115 ||||||||||||||||| || ||| |||||||| | | |||||||||||||||||||| Sbjct: 141997 tttgattctgtcccaggtactccagtggagaagcctttctttgattctgtcccaggcaca 142056 Query: 116 ccactacagaaatcagtcttcgattattccgtccctagcacaccgatgcagaattcatcc 175 || | |||||||||||||| ||||| || || ||||| |||||||||||||| ||| Sbjct: 142057 cccttgcagaaatcagtctttgattactctgttcctagtacaccgatgcagaaatcagtg 142116 Query: 176 tttgactactctgttccgagcacaccgatgcagaagtcactctt 219 ||||| || ||||| || || || || |||||||||||||||| Sbjct: 142117 tttgattattctgtcccaagtacgccattgcagaagtcactctt 142160 Score = 77.8 bits (39), Expect = 4e-11 Identities = 66/75 (88%) Strand = Plus / Plus Query: 1 ggaacagaaaccgatgtttgattctgtcccaggcaccccaatggagaagtcgttatttga 60 |||||||||||| | ||||||||||||||||| || ||| |||||||| | || ||||| Sbjct: 141981 ggaacagaaaccattctttgattctgtcccaggtactccagtggagaagcctttctttga 142040 Query: 61 ttctgtcccaggcac 75 ||||||||||||||| Sbjct: 142041 ttctgtcccaggcac 142055 Score = 44.1 bits (22), Expect = 0.53 Identities = 69/85 (81%) Strand = Plus / Plus Query: 21 attctgtcccaggcaccccaatggagaagtcgttatttgattctgtcccaggcaccccaa 80 ||||||||||| | || ||| || ||||||| | |||||||||||||| | || |||| Sbjct: 142124 attctgtcccaagtacgccattgcagaagtcactctttgattctgtccccagtactccaa 142183 Query: 81 tggagaagtcgntatttgattctgt 105 || |||| || ||||||||||||| Sbjct: 142184 tgcagaaatcagtatttgattctgt 142208 Score = 44.1 bits (22), Expect = 0.53 Identities = 60/73 (82%) Strand = Plus / Plus Query: 60 attctgtcccaggcaccccaatggagaagtcgntatttgattctgtcccaggcactccac 119 ||||||||||| | || ||| || ||||||| | |||||||||||||| | |||||| Sbjct: 142124 attctgtcccaagtacgccattgcagaagtcactctttgattctgtccccagtactccaa 142183 Query: 120 tacagaaatcagt 132 | ||||||||||| Sbjct: 142184 tgcagaaatcagt 142196
>gb|BT018629.1| Zea mays clone EL01N0503A06.d mRNA sequence Length = 1968 Score = 89.7 bits (45), Expect = 1e-14 Identities = 134/164 (81%) Strand = Plus / Plus Query: 56 tttgattctgtcccaggcaccccaatggagaagtcgntatttgattctgtcccaggcact 115 ||||||||||| || || || ||||||||||| | | |||||||| |||||||||| Sbjct: 683 tttgattctgttcctggtactccaatggagaaacctttctttgattccatcccaggcaca 742 Query: 116 ccactacagaaatcagtcttcgattattccgtccctagcacaccgatgcagaattcatcc 175 ||| | ||||| || ||||||||||| ||||||||||| ||||||||||| || ||| | Sbjct: 743 ccagttcagaagtccgtcttcgattactccgtccctagtacaccgatgcaaaactcagtc 802 Query: 176 tttgactactctgttccgagcacaccgatgcagaagtcactctt 219 ||||| || || | || |||||||||||||| ||||| ||||| Sbjct: 803 tttgattattccatccccagcacaccgatgcaaaagtctctctt 846 Score = 75.8 bits (38), Expect = 2e-10 Identities = 109/132 (82%), Gaps = 3/132 (2%) Strand = Plus / Plus Query: 286 gatgcagaaatcactgtttgattcctctgttccaagcacaccaatgcagaattcattcta 345 ||||||||||||| | |||||||| ||| || || || |||| |||||| |||||| Sbjct: 907 gatgcagaaatcagtatttgattc---tgtccctagtacgccaacgcagaaaccattctt 963 Query: 346 tgactcttttccgagcacgccaatgcagggttcactctttgattctggtccaggcagagt 405 |||||||||||| ||||| ||||||||| | || || ||||||||||| ||| |||||| Sbjct: 964 tgactcttttccaagcaccccaatgcagagatccctgtttgattctggcccaagcagagc 1023 Query: 406 ggaatctcctac 417 ||||||||||| Sbjct: 1024 agaatctcctac 1035 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Plus Query: 236 agtacaccgatgcaaagatcactctttgattcttctatgcccagcacgccgatgcagaaa 295 |||||||||||||||| ||| ||||||||| ||| || |||||||| |||||||| || Sbjct: 779 agtacaccgatgcaaaactcagtctttgattattccatccccagcacaccgatgcaaaag 838 Query: 296 tcactgtttgattcc 310 || || ||||||||| Sbjct: 839 tctctctttgattcc 853 Score = 46.1 bits (23), Expect = 0.13 Identities = 65/79 (82%) Strand = Plus / Plus Query: 444 agcagaagggattctttgactcttccgttccaagcacgccgatgtataactccagcttct 503 |||| |||||||||||||| ||||| ||||| || || || ||||| ||||| ||| || Sbjct: 1059 agcaaaagggattctttgattcttcagttccgagtacaccaatgtacaactcaagcctca 1118 Query: 504 cgccaaggtacagcgaagc 522 |||| || ||||| ||||| Sbjct: 1119 cgcccagatacagtgaagc 1137
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 272 atgcccagcacgccgatgcagaaatc 297 ||||||||||||||| |||||||||| Sbjct: 2271639 atgcccagcacgccggtgcagaaatc 2271664
>gb|AC134556.5| Mus musculus BAC clone RP24-320K6 from chromosome Y, complete sequence Length = 180237 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 caatgcagaattcattctatga 348 |||||||||||||||||||||| Sbjct: 94354 caatgcagaattcattctatga 94333
>gb|AC174476.3| Mus musculus BAC clone RP24-446O17 from chromosome y, complete sequence Length = 127902 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Plus Query: 327 caatgcagaattcattctatga 348 |||||||||||||||||||||| Sbjct: 115567 caatgcagaattcattctatga 115588
>gb|AC104592.6| Homo sapiens chromosome 8, clone RP11-714N16, complete sequence Length = 154338 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 gattctgtcccaggcaccccaa 41 |||||||||||||||||||||| Sbjct: 144641 gattctgtcccaggcaccccaa 144620 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 59 gattctgtcccaggcaccccaa 80 |||||||||||||||||||||| Sbjct: 144641 gattctgtcccaggcaccccaa 144620
>dbj|AP006277.1| Homo sapiens genomic DNA, chromosome 8q24.3, clone: KB1335F9, complete sequence Length = 12670 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 20 gattctgtcccaggcaccccaa 41 |||||||||||||||||||||| Sbjct: 2121 gattctgtcccaggcaccccaa 2100 Score = 44.1 bits (22), Expect = 0.53 Identities = 22/22 (100%) Strand = Plus / Minus Query: 59 gattctgtcccaggcaccccaa 80 |||||||||||||||||||||| Sbjct: 2121 gattctgtcccaggcaccccaa 2100
>gb|AC160334.2| Mus musculus BAC clone RP23-37D14 from chromosome 9, complete sequence Length = 180527 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 attctgtcccaggcacccca 40 |||||||||||||||||||| Sbjct: 59240 attctgtcccaggcacccca 59221 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 attctgtcccaggcacccca 79 |||||||||||||||||||| Sbjct: 59240 attctgtcccaggcacccca 59221
>gb|BC073061.1| Xenopus laevis hypothetical protein LOC443616, mRNA (cDNA clone IMAGE:5074403), partial cds Length = 4184 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 tcttctgttccaagtacacc 243 |||||||||||||||||||| Sbjct: 3940 tcttctgttccaagtacacc 3959
>gb|AC099575.10| Mus musculus chromosome 14, clone RP23-83E2, complete sequence Length = 138102 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ccactacagaaatcagtctt 135 |||||||||||||||||||| Sbjct: 128239 ccactacagaaatcagtctt 128258
>emb|AL713859.9| Human DNA sequence from clone RP11-242B9 on chromosome 1 Contains part of a novel gene (FLJ10986), complete sequence Length = 105393 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 attcattctatgactctttt 355 |||||||||||||||||||| Sbjct: 67275 attcattctatgactctttt 67256
>gb|AC154600.3| Mus musculus BAC clone RP23-338O2 from chromosome 14, complete sequence Length = 173591 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 ccactacagaaatcagtctt 135 |||||||||||||||||||| Sbjct: 57216 ccactacagaaatcagtctt 57235
>ref|XM_230983.3| PREDICTED: Rattus norvegicus similar to MLTK-beta (LOC311743), mRNA Length = 1488 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 cactgtttgattcctctgtt 316 |||||||||||||||||||| Sbjct: 1173 cactgtttgattcctctgtt 1154
>emb|AL928696.6| Mouse DNA sequence from clone RP23-387G11 on chromosome 2, complete sequence Length = 102448 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 ttcactctttgattctggtc 395 |||||||||||||||||||| Sbjct: 44302 ttcactctttgattctggtc 44321 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,846,505 Number of Sequences: 3902068 Number of extensions: 4846505 Number of successful extensions: 94755 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94623 Number of HSP's gapped (non-prelim): 94 length of query: 611 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 588 effective length of database: 17,143,297,704 effective search space: 10080259049952 effective search space used: 10080259049952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
