ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags15k22 |
|---|---|
| Clone Library Name | barley_pub |
>AP1M_CAEEL (P35602) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47) (Clathrin coat-associated protein AP47) (Golgi adaptor AP-1 47 kDa protein) (HA1 47 kDa subunit) (Clathrin assembly protein assembly protein complex 1 medium chain) (Uncoor Length = 422 Score = 78.2 bits (191), Expect(3) = 2e-34 Identities = 36/57 (63%), Positives = 44/57 (77%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEV 203 L MMDFG+PQ TE+ IL E+I + ++ RPPMAVTNAVSWRSEGI+Y+KNEV Sbjct: 114 LDEMMDFGFPQTTESRILQEYITQEGQKLISAPRPPMAVTNAVSWRSEGIKYRKNEV 170 Score = 56.2 bits (134), Expect(3) = 2e-34 Identities = 22/41 (53%), Positives = 37/41 (90%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMPRV 408 +VFLDV+ESVN+L ++NG +++S+I+G++KMR +L+GMP + Sbjct: 169 EVFLDVIESVNMLASANGTVLQSEIVGSVKMRVYLTGMPEL 209 Score = 51.2 bits (121), Expect(3) = 2e-34 Identities = 22/36 (61%), Positives = 29/36 (80%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRATKGKAIDLDDIKFHQCV 508 PE +LGLND+VL E GR K K+++L+D+KFHQCV Sbjct: 207 PELRLGLNDKVLFEGSGRG-KSKSVELEDVKFHQCV 241
>AP1M1_HUMAN (Q9BXS5) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 73.9 bits (180), Expect(3) = 2e-34 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIRYKKNEV 203 L +MDFGYPQ T++ IL E+I + +++E RPP VTNAVSWRSEGI+Y+KNEV Sbjct: 113 LDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEV 170 Score = 62.8 bits (151), Expect(3) = 2e-34 Identities = 26/41 (63%), Positives = 38/41 (92%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMPRV 408 +VFLDV+ESVN+LV++NG ++RS+I+G++KMR FLSGMP + Sbjct: 169 EVFLDVIESVNLLVSANGNVLRSEIVGSIKMRVFLSGMPEL 209 Score = 48.9 bits (115), Expect(3) = 2e-34 Identities = 21/36 (58%), Positives = 29/36 (80%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRATKGKAIDLDDIKFHQCV 508 PE +LGLND+VL + GR K K+++L+D+KFHQCV Sbjct: 207 PELRLGLNDKVLFDNTGRG-KSKSVELEDVKFHQCV 241
>AP1M1_MOUSE (P35585) AP-1 complex subunit mu-1 (Adaptor-related protein complex| 1 mu-1 subunit) (Mu-adaptin 1) (Adaptor protein complex AP-1 mu-1 subunit) (Golgi adaptor HA1/AP1 adaptin mu-1 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 422 Score = 73.9 bits (180), Expect(3) = 4e-34 Identities = 34/58 (58%), Positives = 44/58 (75%), Gaps = 1/58 (1%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIRYKKNEV 203 L +MDFGYPQ T++ IL E+I + +++E RPP VTNAVSWRSEGI+Y+KNEV Sbjct: 113 LDELMDFGYPQTTDSKILQEYITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEV 170 Score = 61.6 bits (148), Expect(3) = 4e-34 Identities = 25/41 (60%), Positives = 38/41 (92%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMPRV 408 +VFLDV+E+VN+LV++NG ++RS+I+G++KMR FLSGMP + Sbjct: 169 EVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPEL 209 Score = 48.9 bits (115), Expect(3) = 4e-34 Identities = 21/36 (58%), Positives = 29/36 (80%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRATKGKAIDLDDIKFHQCV 508 PE +LGLND+VL + GR K K+++L+D+KFHQCV Sbjct: 207 PELRLGLNDKVLFDNTGRG-KSKSVELEDVKFHQCV 241
>AP1M2_HUMAN (Q9Y6Q5) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 67.8 bits (164), Expect(3) = 3e-32 Identities = 33/58 (56%), Positives = 43/58 (74%), Gaps = 1/58 (1%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEVTQ-RPPMAVTNAVSWRSEGIRYKKNEV 203 L +MDFG+PQ T++ IL E+I + ++E + R P VTNAVSWRSEGI+YKKNEV Sbjct: 114 LDELMDFGFPQTTDSKILQEYITQQSNKLETGKSRVPPTVTNAVSWRSEGIKYKKNEV 171 Score = 58.5 bits (140), Expect(3) = 3e-32 Identities = 23/41 (56%), Positives = 36/41 (87%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMPRV 408 +VF+DV+ESVN+LVN+NG ++ S+I+G +K++ FLSGMP + Sbjct: 170 EVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPEL 210 Score = 52.0 bits (123), Expect(3) = 3e-32 Identities = 23/36 (63%), Positives = 30/36 (83%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRATKGKAIDLDDIKFHQCV 508 PE +LGLNDRVL E GR+ K K+++L+D+KFHQCV Sbjct: 208 PELRLGLNDRVLFELTGRS-KNKSVELEDVKFHQCV 242
>AP1M2_MOUSE (Q9WVP1) AP-1 complex subunit mu-2 (Adaptor-related protein complex| 1 mu-2 subunit) (Mu-adaptin 2) (Adaptor protein complex AP-1 mu-2 subunit) (Golgi adaptor HA1/AP1 adaptin mu-2 subunit) (Clathrin assembly protein assembly protein complex 1 Length = 423 Score = 67.4 bits (163), Expect(3) = 3e-32 Identities = 33/58 (56%), Positives = 42/58 (72%), Gaps = 1/58 (1%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEVTQ-RPPMAVTNAVSWRSEGIRYKKNEV 203 L +MDFG+PQ T++ IL E+I ++E + R P VTNAVSWRSEGI+YKKNEV Sbjct: 114 LDELMDFGFPQTTDSKILQEYITQQGNKLETGKSRVPPTVTNAVSWRSEGIKYKKNEV 171 Score = 58.5 bits (140), Expect(3) = 3e-32 Identities = 23/41 (56%), Positives = 36/41 (87%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMPRV 408 +VF+DV+ESVN+LVN+NG ++ S+I+G +K++ FLSGMP + Sbjct: 170 EVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPEL 210 Score = 52.0 bits (123), Expect(3) = 3e-32 Identities = 23/36 (63%), Positives = 30/36 (83%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRATKGKAIDLDDIKFHQCV 508 PE +LGLNDRVL E GR+ K K+++L+D+KFHQCV Sbjct: 208 PELRLGLNDRVLFELTGRS-KNKSVELEDVKFHQCV 242
>AP1M1_SCHPO (Q9HFE5) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) Length = 426 Score = 67.8 bits (164), Expect(3) = 8e-31 Identities = 31/57 (54%), Positives = 41/57 (71%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEV 203 L +MDFG+PQ TE IL E+I + ++ PP+A+TNA+SWRSEGI Y+KNEV Sbjct: 114 LDEIMDFGFPQTTETKILQEYITQTSNTVKKHAPPPIAMTNAISWRSEGIHYRKNEV 170 Score = 55.8 bits (133), Expect(3) = 8e-31 Identities = 22/36 (61%), Positives = 29/36 (80%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRATKGKAIDLDDIKFHQCV 508 PE +LGLND+VL EA GR KG ++++D+KFHQCV Sbjct: 207 PELRLGLNDKVLFEAAGRTIKGNTVEMEDVKFHQCV 242 Score = 49.7 bits (117), Expect(3) = 8e-31 Identities = 18/41 (43%), Positives = 35/41 (85%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMPRV 408 +VFLDV+ESVN++ ++G +++S+I+G ++++ +LSGMP + Sbjct: 169 EVFLDVIESVNLIAAADGTVIQSEILGKVRLKCYLSGMPEL 209
>AP2M1_RAT (P84092) AP-2 complex subunit mu-1 (Adaptin mu-1) (AP-2 mu-2 chain)| (Clathrin coat assembly protein AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) Length = 435 Score = 45.4 bits (106), Expect(3) = 1e-19 Identities = 18/39 (46%), Positives = 32/39 (82%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 ++FLDV+ESVN+L++ GQ++ + + G + M+++LSGMP Sbjct: 172 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP 210 Score = 45.1 bits (105), Expect(3) = 1e-19 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 7/43 (16%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRAT------KGK-AIDLDDIKFHQCV 508 PECK G+ND++++E QG+ T GK +I +DD FHQCV Sbjct: 210 PECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCV 252 Score = 44.7 bits (104), Expect(3) = 1e-19 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKN 197 L ++DFGYPQ +E L FI K+ E + VT + WR EGI+Y++N Sbjct: 112 LDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRN 171 Query: 198 EV 203 E+ Sbjct: 172 EL 173
>AP2M1_MOUSE (P84091) AP-2 complex subunit mu-1 (Adaptin mu-1) (AP-2 mu-2 chain)| (Clathrin coat assembly protein AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) Length = 435 Score = 45.4 bits (106), Expect(3) = 1e-19 Identities = 18/39 (46%), Positives = 32/39 (82%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 ++FLDV+ESVN+L++ GQ++ + + G + M+++LSGMP Sbjct: 172 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP 210 Score = 45.1 bits (105), Expect(3) = 1e-19 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 7/43 (16%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRAT------KGK-AIDLDDIKFHQCV 508 PECK G+ND++++E QG+ T GK +I +DD FHQCV Sbjct: 210 PECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCV 252 Score = 44.7 bits (104), Expect(3) = 1e-19 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKN 197 L ++DFGYPQ +E L FI K+ E + VT + WR EGI+Y++N Sbjct: 112 LDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRN 171 Query: 198 EV 203 E+ Sbjct: 172 EL 173
>AP2M1_HUMAN (Q96CW1) AP-2 complex subunit mu-1 (Adaptin mu-1) (AP-2 mu-2 chain)| (Clathrin coat assembly protein AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (HA2 50 kDa subunit) (Clathrin assembly protein co Length = 435 Score = 45.4 bits (106), Expect(3) = 1e-19 Identities = 18/39 (46%), Positives = 32/39 (82%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 ++FLDV+ESVN+L++ GQ++ + + G + M+++LSGMP Sbjct: 172 ELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMP 210 Score = 45.1 bits (105), Expect(3) = 1e-19 Identities = 21/43 (48%), Positives = 29/43 (67%), Gaps = 7/43 (16%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRAT------KGK-AIDLDDIKFHQCV 508 PECK G+ND++++E QG+ T GK +I +DD FHQCV Sbjct: 210 PECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCV 252 Score = 44.7 bits (104), Expect(3) = 1e-19 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 5/62 (8%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKN 197 L ++DFGYPQ +E L FI K+ E + VT + WR EGI+Y++N Sbjct: 112 LDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRN 171 Query: 198 EV 203 E+ Sbjct: 172 EL 173
>AP2M_CAEEL (P35603) AP-2 complex subunit mu (Clathrin coat assembly protein| AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) (Dumpy protein 23) Length = 441 Score = 47.0 bits (110), Expect(3) = 2e-18 Identities = 18/39 (46%), Positives = 31/39 (79%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 ++FLDV+E VN+L+N GQ++ + + G + M+++LSGMP Sbjct: 176 ELFLDVIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMP 214 Score = 45.1 bits (105), Expect(3) = 2e-18 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 9/66 (13%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYR-----MEVTQRPPMAVTNAVS----WRSEGIR 185 L ++DFGYPQ T+ +L FI R + VT+ +T+ V+ WR EGI+ Sbjct: 112 LDEILDFGYPQNTDPGVLKTFITQQGVRTADAPVPVTKEEQSQITSQVTGQIGWRREGIK 171 Query: 186 YKKNEV 203 Y++NE+ Sbjct: 172 YRRNEL 177 Score = 38.9 bits (89), Expect(3) = 2e-18 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 7/43 (16%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGR-------ATKGKAIDLDDIKFHQCV 508 PECK G+ND++ +E + + A+ +DD +FHQCV Sbjct: 214 PECKFGINDKITIEGKSKPGSDDPNKASRAAVAIDDCQFHQCV 256
>AP2M_DICDI (P54672) AP-2 complex subunit mu (Clathrin coat assembly protein| AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) Length = 439 Score = 49.7 bits (117), Expect(3) = 1e-17 Identities = 20/39 (51%), Positives = 33/39 (84%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 ++++DVVESVN+L+++ G I+R+D+ G + M+ FLSGMP Sbjct: 174 ELYIDVVESVNLLMSAEGNILRADVSGQVMMKCFLSGMP 212 Score = 42.4 bits (98), Expect(3) = 1e-17 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 10/46 (21%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRATKGKA----------IDLDDIKFHQCV 508 PECK G+ND+V+++ + G A I++DDI FHQCV Sbjct: 212 PECKFGMNDKVIMDREKSTNGGSAARSGRRRANGIEIDDITFHQCV 257 Score = 36.2 bits (82), Expect(3) = 1e-17 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFI--------KTDAYRMEVTQRPPMAVTNAVSWRSEGIRY 188 L ++DFGYPQ +L +I D + + + + T WR+ I+Y Sbjct: 111 LDEILDFGYPQNCSTDVLKLYITQGQGKLKSLDKLKQDKISKITIHATGTTPWRTPDIKY 170 Query: 189 KKNEV 203 K+NE+ Sbjct: 171 KRNEL 175
>AP1M1_YEAST (Q00776) AP-1 complex subunit mu-1 (Mu(1)-adaptin) (Clathrin| assembly protein complex 1 medium chain) (Clathrin coat assembly protein AP54) (Clathrin coat-associated protein AP54) (Golgi adaptor AP-1 54 kDa protein) (HA1 54 kDa subunit) Length = 475 Score = 57.0 bits (136), Expect(2) = 3e-17 Identities = 27/63 (42%), Positives = 41/63 (65%), Gaps = 7/63 (11%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEVTQ-------RPPMAVTNAVSWRSEGIRYK 191 L +MD+G PQ TE +L ++I ++++ + RPP+A+TN+VSWR EGI +K Sbjct: 115 LDEVMDYGIPQITETKMLKQYITQKSFKLVKSAKKKRNATRPPVALTNSVSWRPEGITHK 174 Query: 192 KNE 200 KNE Sbjct: 175 KNE 177 Score = 50.1 bits (118), Expect(2) = 3e-17 Identities = 21/39 (53%), Positives = 32/39 (82%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 + FLD+VES+N+L+ GQ++RS+IIG +K+ + LSGMP Sbjct: 177 EAFLDIVESINMLMTQKGQVLRSEIIGDVKVNSKLSGMP 215
>AP2M_SCHPO (Q09718) AP-2 complex subunit mu (Probable clathrin coat assembly| protein AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) Length = 446 Score = 50.8 bits (120), Expect(3) = 3e-13 Identities = 19/38 (50%), Positives = 31/38 (81%) Frame = +1 Query: 289 VFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 +++D+VE +N+L++S G ++RSD+ G +KMR LSGMP Sbjct: 180 IYIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMP 217 Score = 32.3 bits (72), Expect(3) = 3e-13 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 13/49 (26%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQGRATKGKA-------------IDLDDIKFHQCV 508 PEC+ GLND++ + + +K K+ + L+D +FHQCV Sbjct: 217 PECQFGLNDKLDFKLKQSESKSKSNNSRNPSSVNGGFVILEDCQFHQCV 265 Score = 30.0 bits (66), Expect(3) = 3e-13 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 13/70 (18%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRM-------------EVTQRPPMAVTNAVSWRS 173 L M+D+G Q TE L+ + A + ++ + +V WR Sbjct: 111 LDEMIDYGIIQTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPGSVPWRR 170 Query: 174 EGIRYKKNEV 203 GI+Y+KN + Sbjct: 171 AGIKYRKNSI 180
>AP3M2_RAT (P53678) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa subu Length = 418 Score = 36.2 bits (82), Expect(3) = 2e-06 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIK----------TDAYRMEVTQRPPMAVTNAVSWRSEGI 182 L M+D G+P TE+ IL E IK T V + P + V WR G+ Sbjct: 113 LEEMLDNGFPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGV 172 Query: 183 RYKKNE 200 +Y NE Sbjct: 173 KYTNNE 178 Score = 31.2 bits (69), Expect(3) = 2e-06 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 + + DVVE ++ +++ +G V ++I G + L+GMP Sbjct: 178 EAYFDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMP 216 Score = 21.9 bits (45), Expect(3) = 2e-06 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +2 Query: 479 LDDIKFHQCV 508 LDD+ FH CV Sbjct: 228 LDDVSFHPCV 237
>AP3M2_MOUSE (Q8R2R9) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa su Length = 418 Score = 36.2 bits (82), Expect(3) = 2e-06 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIK----------TDAYRMEVTQRPPMAVTNAVSWRSEGI 182 L M+D G+P TE+ IL E IK T V + P + V WR G+ Sbjct: 113 LEEMLDNGFPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGV 172 Query: 183 RYKKNE 200 +Y NE Sbjct: 173 KYTNNE 178 Score = 31.2 bits (69), Expect(3) = 2e-06 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 + + DVVE ++ +++ +G V ++I G + L+GMP Sbjct: 178 EAYFDVVEEIDAIIDKSGSTVTAEIQGVIDACVKLTGMP 216 Score = 21.9 bits (45), Expect(3) = 2e-06 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +2 Query: 479 LDDIKFHQCV 508 LDD+ FH CV Sbjct: 228 LDDVSFHPCV 237
>AP3M2_HUMAN (P53677) AP-3 complex subunit mu-2 (Adapter-related protein complex| 3 mu-2 subunit) (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat-associated protein AP47 homolog 2) (Golgi adaptor AP-1 47 kDa protein homolog 2) (HA1 47 kDa su Length = 418 Score = 36.2 bits (82), Expect(3) = 3e-06 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIK----------TDAYRMEVTQRPPMAVTNAVSWRSEGI 182 L M+D G+P TE+ IL E IK T V + P + V WR G+ Sbjct: 113 LEEMLDNGFPLATESNILKELIKPPTILRTVVNTITGSTNVGDQLPTGQLSVVPWRRTGV 172 Query: 183 RYKKNE 200 +Y NE Sbjct: 173 KYTNNE 178 Score = 30.4 bits (67), Expect(3) = 3e-06 Identities = 10/39 (25%), Positives = 24/39 (61%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 + + DV+E ++ +++ +G + ++I G + L+GMP Sbjct: 178 EAYFDVIEEIDAIIDKSGSTITAEIQGVIDACVKLTGMP 216 Score = 21.9 bits (45), Expect(3) = 3e-06 Identities = 7/10 (70%), Positives = 8/10 (80%) Frame = +2 Query: 479 LDDIKFHQCV 508 LDD+ FH CV Sbjct: 228 LDDVSFHPCV 237
>AP2M_YEAST (Q99186) AP-2 complex subunit mu (Clathrin coat assembly protein| AP50) (Clathrin coat-associated protein AP50) (Plasma membrane adaptor AP-2 50 kDa protein) (Clathrin assembly protein complex 2 medium chain) (Adaptin medium chain APM4) Length = 491 Score = 37.4 bits (85), Expect(3) = 9e-06 Identities = 18/39 (46%), Positives = 27/39 (69%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 +VFL V E +NILV+ +G I++S + G + + T LSG P Sbjct: 211 EVFLYVNERINILVSRDGSILKSYVDGTIDITTHLSGTP 249 Score = 25.4 bits (54), Expect(3) = 9e-06 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = +3 Query: 153 NAVSWRSEGIRYKKNEV 203 N ++WR +GI +KK+EV Sbjct: 196 NKITWRPKGIIHKKDEV 212 Score = 24.3 bits (51), Expect(3) = 9e-06 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 23/59 (38%) Frame = +2 Query: 401 PECKLGLNDRVLLEAQG-----------------------RATKGKAIDLDDIKFHQCV 508 P C+ GLND + ++++ +A G + L+D KFH+CV Sbjct: 249 PICRFGLNDSLGMQSEDEKKWLAQQQRHSGSDFGNKNFIPKAAAGSVL-LEDCKFHECV 306
>AP3M1_RAT (P53676) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) (Clathrin coat assembly protein AP47 homolog 1) (Clathrin coat-associated protein AP47 homolog 1) (Golgi ada Length = 418 Score = 33.9 bits (76), Expect(3) = 1e-05 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEVT----------QRPPMAVTNAVSWRSEGI 182 L M+D G+P TE+ IL E IK V P + + WR G+ Sbjct: 113 LEEMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGV 172 Query: 183 RYKKNE 200 +Y NE Sbjct: 173 KYTNNE 178 Score = 31.2 bits (69), Expect(3) = 1e-05 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 + + DVVE ++ +++ +G V ++I G + LSGMP Sbjct: 178 EAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMP 216 Score = 21.6 bits (44), Expect(3) = 1e-05 Identities = 6/10 (60%), Positives = 8/10 (80%) Frame = +2 Query: 479 LDDIKFHQCV 508 LDD+ FH C+ Sbjct: 228 LDDVSFHPCI 237
>AP3M1_MOUSE (Q9JKC8) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) Length = 418 Score = 33.9 bits (76), Expect(3) = 1e-05 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEVT----------QRPPMAVTNAVSWRSEGI 182 L M+D G+P TE+ IL E IK V P + + WR G+ Sbjct: 113 LEEMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGV 172 Query: 183 RYKKNE 200 +Y NE Sbjct: 173 KYTNNE 178 Score = 31.2 bits (69), Expect(3) = 1e-05 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 + + DVVE ++ +++ +G V ++I G + LSGMP Sbjct: 178 EAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMP 216 Score = 21.6 bits (44), Expect(3) = 1e-05 Identities = 6/10 (60%), Positives = 8/10 (80%) Frame = +2 Query: 479 LDDIKFHQCV 508 LDD+ FH C+ Sbjct: 228 LDDVSFHPCI 237
>AP3M1_HUMAN (Q9Y2T2) AP-3 complex subunit mu-1 (Adapter-related protein complex| 3 mu-1 subunit) (Mu-adaptin 3A) (AP-3 adapter complex mu3A subunit) Length = 418 Score = 33.9 bits (76), Expect(3) = 1e-05 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEVT----------QRPPMAVTNAVSWRSEGI 182 L M+D G+P TE+ IL E IK V P + + WR G+ Sbjct: 113 LEEMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDTLPTGQLSNIPWRRAGV 172 Query: 183 RYKKNE 200 +Y NE Sbjct: 173 KYTNNE 178 Score = 31.2 bits (69), Expect(3) = 1e-05 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFLSGMP 402 + + DVVE ++ +++ +G V ++I G + LSGMP Sbjct: 178 EAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMP 216 Score = 21.6 bits (44), Expect(3) = 1e-05 Identities = 6/10 (60%), Positives = 8/10 (80%) Frame = +2 Query: 479 LDDIKFHQCV 508 LDD+ FH C+ Sbjct: 228 LDDVSFHPCI 237
>AP4M1_HUMAN (O00189) AP-4 complex subunit mu-1 (Adapter-related protein complex| 4 mu-1 subunit) (Mu subunit of AP-4) (AP-4 adapter complex mu subunit) (Mu-adaptin-related protein 2) (mu-ARP2) (mu4) Length = 453 Score = 40.4 bits (93), Expect(2) = 7e-04 Identities = 15/35 (42%), Positives = 29/35 (82%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFL 390 +VFLDVVE +++L+ SNG +++ D+ G +++++FL Sbjct: 186 EVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFL 220 Score = 21.2 bits (43), Expect(2) = 7e-04 Identities = 9/35 (25%), Positives = 16/35 (45%) Frame = +2 Query: 404 ECKLGLNDRVLLEAQGRATKGKAIDLDDIKFHQCV 508 E ++GL + + G I +D++ FH V Sbjct: 225 EMRIGLTEEFCVGKSELRGYGPGIRVDEVSFHSSV 259
>APM2_YEAST (P38700) Adaptin medium chain homolog APM2| Length = 605 Score = 34.3 bits (77), Expect(2) = 0.001 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDII-GALKMRTFLSGMPRV 408 + FLDV+E V L++ ++R ++I G + R +LSGMP++ Sbjct: 271 EFFLDVIERVQYLMDFEKGVIRKNLIHGEIVCRCYLSGMPKL 312 Score = 26.6 bits (57), Expect(2) = 0.001 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = +3 Query: 159 VSWRSEGIRYKKNE 200 +SWR++GI Y KNE Sbjct: 258 ISWRTKGIHYAKNE 271
>AP4M1_RAT (Q2PWT8) AP-4 complex subunit mu-1 (Adapter-related protein complex| 4 mu-1 subunit) (Mu subunit of AP-4) (AP-4 adapter complex mu subunit) (Mu-adaptin-related protein 2) (mu-ARP2) (mu4) Length = 453 Score = 40.4 bits (93), Expect = 0.003 Identities = 15/35 (42%), Positives = 29/35 (82%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFL 390 +VFLDVVE +++L+ SNG +++ D+ G +++++FL Sbjct: 186 EVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFL 220
>AP4M1_MOUSE (Q9JKC7) AP-4 complex subunit mu-1 (Adapter-related protein complex| 4 mu-1 subunit) (Mu subunit of AP-4) (AP-4 adapter complex mu subunit) (Mu-adaptin-related protein 2) (mu-ARP2) (mu4) Length = 449 Score = 40.4 bits (93), Expect = 0.003 Identities = 15/35 (42%), Positives = 29/35 (82%) Frame = +1 Query: 286 QVFLDVVESVNILVNSNGQIVRSDIIGALKMRTFL 390 +VFLDVVE +++L+ SNG +++ D+ G +++++FL Sbjct: 186 EVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFL 220
>AP1M_DISOM (P47795) AP-1 complex subunit mu (Clathrin coat assembly protein| AP47 homolog) (Clathrin coat-associated protein AP47 homolog) (Golgi adaptor AP-1 47 kDa protein homolog) (HA1 47 kDa subunit homolog) (Clathrin assembly protein assembly protein Length = 418 Score = 34.3 bits (77), Expect = 0.20 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Frame = +3 Query: 33 LTXMMDFGYPQYTEATILSEFIKTDAYRMEVT----------QRPPMAVTNAVSWRSEGI 182 L M+D G+P TE+ IL E IK V + P + + WR G+ Sbjct: 113 LEEMLDNGFPLATESNILKELIKPPTILRSVVNSITGSSNVGDQLPTGQLSNIPWRRVGV 172 Query: 183 RYKKNE 200 +Y NE Sbjct: 173 KYTNNE 178
>HMEC_ARCFU (O29749) Hdr-like menaquinol oxidoreductase cytochrome b-like| subunit (Hme subunit C) Length = 332 Score = 30.0 bits (66), Expect = 3.8 Identities = 18/62 (29%), Positives = 34/62 (54%) Frame = -2 Query: 205 HTSFFL*RIPSLLHDTAFVTAMGGLWVTSIL*ASVLMNSLRIVASVYCGYPKSIXLVKQL 26 H+ FFL +PS + + + A G+++ SV M+ L IVA+++ + + I L ++ Sbjct: 119 HSRFFLDPVPSFVETLSEIEAFKGVFI-----PSVYMSGLAIVAALFLLWLRRIFLSRER 173 Query: 25 VL 20 L Sbjct: 174 TL 175
>TSEAR_HUMAN (Q8WU66) Protein TSPEAR precursor (TSP-EAR)| Length = 669 Score = 29.3 bits (64), Expect = 6.5 Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = -1 Query: 179 PLAPP*HRVRDRHGW-PLGDLHPVGIRLNELTQDRCLRVLRIPEVHHXRQATRTARNPR 6 PLA P H + GW P DL P+ I + D +RI +VH R + PR Sbjct: 12 PLAAPGHGTQ---GWEPCTDLRPLDILAEVVPSDGATSGIRIVQVHGARGLQLSVAAPR 67
>PERC_DROME (Q9VEG6) Chorion peroxidase precursor (EC 1.11.1.7)| (Peroxinectin-related protein) (Dpxt) [Contains: Chorion peroxidase light chain; Chorion peroxidase heavy chain] Length = 831 Score = 29.3 bits (64), Expect = 6.5 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Frame = -2 Query: 394 HLEMCASSEPQ*CQI--SQSAHCC*LGC*HSQPHPRTPATHQVDNFP 260 H+ M + +PQ C + + +CC G H+ P P T + FP Sbjct: 82 HVRMESHEKPQICDLPAGKFGYCCETGQNHTAPKPETSPKERRSGFP 128
>JUNB_CYPCA (P79703) Transcription factor jun-B| Length = 308 Score = 28.9 bits (63), Expect = 8.5 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +2 Query: 110 LQDGGHPEATHGGHERGVMEERGDSLQEE 196 +Q HPE THG GV+ +R L+EE Sbjct: 175 VQQSQHPENTHGFQHSGVLPQRYVPLKEE 203 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,988,676 Number of Sequences: 219361 Number of extensions: 1537542 Number of successful extensions: 3514 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3367 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3484 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
