ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bags15k22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009619.1| Triticum aestivum clone wre1n.pk0123.c3:fis, full insert mRNA sequence Length = 1508 Score = 319 bits (161), Expect = 5e-84 Identities = 207/221 (93%), Gaps = 1/221 (0%) Strand = Plus / Plus Query: 289 gtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagattgtg 348 |||||||||||||||||||||||||||||||| || || || ||||| |||||||| ||| Sbjct: 333 gtgttcttggatgtggttgagagtgtcaacattcttgtcaatagcaacgggcagatcgtg 392 Query: 349 agatctgacatcattggggctctgaagatgcgcacatttctaagtggaatgccccgagtg 408 |||||||||||||| || || ||||||||||| || ||||| |||||||||||| ||||| Sbjct: 393 agatctgacatcatcggcgcgctgaagatgcggacctttctgagtggaatgccc-gagtg 451 Query: 409 taaacttgggttgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaa 468 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 452 taaacttgggttgaatgatagagttcttttggaagcgcaaggccgagcaactaaaggaaa 511 Query: 469 agcaatagatctggatgatatcaaatttcatcagtgtgttc 509 ||||||||||||||||||||||||||||||||||||||||| Sbjct: 512 agcaatagatctggatgatatcaaatttcatcagtgtgttc 552 Score = 228 bits (115), Expect = 1e-56 Identities = 151/163 (92%) Strand = Plus / Plus Query: 42 atgatggacttcgggtatccgcaatacacggaggcaacgatcctgagtgagttcattaag 101 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| Sbjct: 174 atgatggacttcgggtatccgcaatacacagaggcgacgatcctgagtgagttcatcaag 233 Query: 102 acggatgcctacaggatggaggtcacccagaggccacccatggcggtcacgaacgcggtg 161 || ||||| ||||||||||||||||| |||||||| |||||||| || |||||||| ||| Sbjct: 234 accgatgcatacaggatggaggtcacacagaggccgcccatggcagtgacgaacgccgtg 293 Query: 162 tcatggaggagcgaggggattcgttacaagaagaatgaagtgt 204 |||||| |||||||||||||||| ||||||||||||||||||| Sbjct: 294 tcatggcggagcgaggggattcggtacaagaagaatgaagtgt 336
>dbj|AK065138.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A10, full insert sequence Length = 1899 Score = 240 bits (121), Expect = 4e-60 Identities = 197/221 (89%), Gaps = 1/221 (0%) Strand = Plus / Plus Query: 289 gtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagattgtg 348 ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| Sbjct: 744 gtgttcttggatgtggtggagagtgtcaatatcctcgttaacagcaatgggcagatagtg 803 Query: 349 agatctgacatcattggggctctgaagatgcgcacatttctaagtggaatgccccgagtg 408 || ||||| |||| || | ||||| ||||| || |||||||||||||||||| ||||| Sbjct: 804 aggtctgatgtcatcggtgagctgaaaatgcgaacctttctaagtggaatgccc-gagtg 862 Query: 409 taaacttgggttgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaa 468 ||||| |||||||||||||| ||||| ||||| |||||||||||| ||||||||||||| Sbjct: 863 caaactggggttgaatgatagggttctcttggaggctcaaggccgaacaactaaaggaaa 922 Query: 469 agcaatagatctggatgatatcaaatttcatcagtgtgttc 509 |||||||||| |||| ||||||||||| ||||||||||||| Sbjct: 923 agcaatagatttggacgatatcaaattccatcagtgtgttc 963 Score = 196 bits (99), Expect = 5e-47 Identities = 160/179 (89%), Gaps = 1/179 (0%) Strand = Plus / Plus Query: 26 gagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggcaacgatcct 85 ||||||||||| ||| |||||||| |||||||| || ||||||||||| |||| |||||| Sbjct: 570 gagttgcttgatgag-atgatggatttcgggtacccacaatacacggaagcaatgatcct 628 Query: 86 gagtgagttcattaagacggatgcctacaggatggaggtcacccagaggccacccatggc 145 ||| ||||||||||| ||||| || ||||||||||||||||| |||||||| |||||||| Sbjct: 629 gagcgagttcattaaaacggacgcgtacaggatggaggtcactcagaggccgcccatggc 688 Query: 146 ggtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaatgaagtgt 204 || || || || |||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 689 agtgacaaatgctgtgtcatggaggagcgaggggattcggtacaagaagaatgaagtgt 747
>gb|AY109738.1| Zea mays CL9467_1 mRNA sequence Length = 1356 Score = 222 bits (112), Expect = 9e-55 Identities = 191/216 (88%), Gaps = 1/216 (0%) Strand = Plus / Minus Query: 292 ttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagattgtgaga 351 ||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||| Sbjct: 1205 ttcttggatgtagtagagagtgttaacattctagttaacagcaatgggcagattgtgaga 1146 Query: 352 tctgacatcattggggctctgaagatgcgcacatttctaagtggaatgccccgagtgtaa 411 || || | ||||||| ||||||||||| |||| | | ||||||||||| ||||| || Sbjct: 1145 tcagatgtggttggggcactgaagatgcgaacatatttgagtggaatgcct-gagtgcaa 1087 Query: 412 acttgggttgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaaagc 471 ||| || ||||||||||| ||||||||||| ||||||||| ||||||||||||||||||| Sbjct: 1086 actcggcttgaatgatagggttcttttggaggctcaaggcagagcaactaaaggaaaagc 1027 Query: 472 aatagatctggatgatatcaaatttcatcagtgtgt 507 ||||| || |||||||||||||||||||||||||| Sbjct: 1026 gatagaccttgatgatatcaaatttcatcagtgtgt 991 Score = 163 bits (82), Expect = 7e-37 Identities = 133/150 (88%) Strand = Plus / Minus Query: 53 cgggtatccgcaatacacggaggcaacgatcctgagtgagttcattaagacggatgccta 112 |||||| || |||||||||||||| | |||||| ||||||||||| ||||| ||||| || Sbjct: 1356 cgggtacccacaatacacggaggcgaagatcctaagtgagttcatcaagacagatgcgta 1297 Query: 113 caggatggaggtcacccagaggccacccatggcggtcacgaacgcggtgtcatggaggag 172 ||||||||||||||| ||| | ||||||||||| || || || || |||||||||||||| Sbjct: 1296 caggatggaggtcacacagcgtccacccatggccgtgacaaatgctgtgtcatggaggag 1237 Query: 173 cgaggggattcgttacaagaagaatgaagt 202 ||||||||| |||||||||||||||||||| Sbjct: 1236 cgaggggatccgttacaagaagaatgaagt 1207
>ref|NM_192230.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1290 Score = 214 bits (108), Expect = 2e-52 Identities = 190/216 (87%), Gaps = 1/216 (0%) Strand = Plus / Plus Query: 289 gtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagattgtg 348 |||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||| Sbjct: 520 gtgttcttggatgttgtggagagtgttaacattcttgttaacagcaatgggcagattgtg 579 Query: 349 agatctgacatcattggggctctgaagatgcgcacatttctaagtggaatgccccgagtg 408 ||||| || | ||||||| ||||||||||| |||| | | ||||||||||| ||||| Sbjct: 580 agatcagatgttgttggggcactgaagatgcggacatatttgagtggaatgcct-gagtg 638 Query: 409 taaacttgggttgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaa 468 |||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 639 caaacttggattgaacgatagggttcttttggaggctcaaggccgagctactaaaggaaa 698 Query: 469 agcaatagatctggatgatatcaaatttcatcagtg 504 |||||||||||| |||||||| |||||||| ||||| Sbjct: 699 agcaatagatcttgatgatattaaatttcaccagtg 734 Score = 135 bits (68), Expect = 2e-28 Identities = 152/179 (84%), Gaps = 1/179 (0%) Strand = Plus / Plus Query: 26 gagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggcaacgatcct 85 ||||||||||| || |||||||| || ||||| || |||||||||||||| | ||| | Sbjct: 346 gagttgcttgatga-aatgatggattttgggtacccacaatacacggaggcgaaaatctt 404 Query: 86 gagtgagttcattaagacggatgcctacaggatggaggtcacccagaggccacccatggc 145 ||||| ||||||||||||||||| |||||||||||||| | ||||||||||| ||||| Sbjct: 405 aagtgaattcattaagacggatgcgtacaggatggaggtatcacagaggccacctatggc 464 Query: 146 ggtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaatgaagtgt 204 || || || || ||||||||| |||| ||||| ||||| ||||||||||||||||||| Sbjct: 465 agtgacaaatgccgtgtcatggcggagtgagggtattcggtacaagaagaatgaagtgt 523
>dbj|AK065538.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013030K02, full insert sequence Length = 1892 Score = 214 bits (108), Expect = 2e-52 Identities = 190/216 (87%), Gaps = 1/216 (0%) Strand = Plus / Plus Query: 289 gtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagattgtg 348 |||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||| Sbjct: 763 gtgttcttggatgttgtggagagtgttaacattcttgttaacagcaatgggcagattgtg 822 Query: 349 agatctgacatcattggggctctgaagatgcgcacatttctaagtggaatgccccgagtg 408 ||||| || | ||||||| ||||||||||| |||| | | ||||||||||| ||||| Sbjct: 823 agatcagatgttgttggggcactgaagatgcggacatatttgagtggaatgcct-gagtg 881 Query: 409 taaacttgggttgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaa 468 |||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 882 caaacttggattgaacgatagggttcttttggaggctcaaggccgagctactaaaggaaa 941 Query: 469 agcaatagatctggatgatatcaaatttcatcagtg 504 |||||||||||| |||||||| |||||||| ||||| Sbjct: 942 agcaatagatcttgatgatattaaatttcaccagtg 977 Score = 135 bits (68), Expect = 2e-28 Identities = 152/179 (84%), Gaps = 1/179 (0%) Strand = Plus / Plus Query: 26 gagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggcaacgatcct 85 ||||||||||| || |||||||| || ||||| || |||||||||||||| | ||| | Sbjct: 589 gagttgcttgatga-aatgatggattttgggtacccacaatacacggaggcgaaaatctt 647 Query: 86 gagtgagttcattaagacggatgcctacaggatggaggtcacccagaggccacccatggc 145 ||||| ||||||||||||||||| |||||||||||||| | ||||||||||| ||||| Sbjct: 648 aagtgaattcattaagacggatgcgtacaggatggaggtatcacagaggccacctatggc 707 Query: 146 ggtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaatgaagtgt 204 || || || || ||||||||| |||| ||||| ||||| ||||||||||||||||||| Sbjct: 708 agtgacaaatgccgtgtcatggcggagtgagggtattcggtacaagaagaatgaagtgt 766
>dbj|AK060762.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-033-A04, full insert sequence Length = 1867 Score = 206 bits (104), Expect = 5e-50 Identities = 189/216 (87%), Gaps = 1/216 (0%) Strand = Plus / Plus Query: 289 gtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagattgtg 348 |||||||||||||| || |||||||| ||||| || |||||||||||||||||||||||| Sbjct: 753 gtgttcttggatgttgtggagagtgttaacattcttgttaacagcaatgggcagattgtg 812 Query: 349 agatctgacatcattggggctctgaagatgcgcacatttctaagtggaatgccccgagtg 408 ||||| || | ||||||| ||||||||||| |||| | | ||||||||||| | ||| Sbjct: 813 agatcagatgttgttggggcactgaagatgcggacatatttgagtggaatgcctgg-gtg 871 Query: 409 taaacttgggttgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaa 468 |||||||| ||||| ||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct: 872 caaacttggattgaacgatagggttcttttggaggctcaaggccgagctactaaaggaaa 931 Query: 469 agcaatagatctggatgatatcaaatttcatcagtg 504 |||||||||||| |||||||| |||||||| ||||| Sbjct: 932 agcaatagatcttgatgatattaaatttcaccagtg 967 Score = 135 bits (68), Expect = 2e-28 Identities = 152/179 (84%), Gaps = 1/179 (0%) Strand = Plus / Plus Query: 26 gagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggcaacgatcct 85 ||||||||||| || |||||||| || ||||| || |||||||||||||| | ||| | Sbjct: 579 gagttgcttgatga-aatgatggattttgggtacccacaatacacggaggcgaaaatctt 637 Query: 86 gagtgagttcattaagacggatgcctacaggatggaggtcacccagaggccacccatggc 145 ||||| ||||||||||||||||| |||||||||||||| | ||||||||||| ||||| Sbjct: 638 aagtgaattcattaagacggatgcgtacaggatggaggtatcacagaggccacctatggc 697 Query: 146 ggtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaatgaagtgt 204 || || || || ||||||||| |||| ||||| ||||| ||||||||||||||||||| Sbjct: 698 agtgacaaatgccgtgtcatggcggagtgagggtattcggtacaagaagaatgaagtgt 756
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07, complete sequence Length = 122120 Score = 202 bits (102), Expect = 8e-49 Identities = 169/190 (88%), Gaps = 1/190 (0%) Strand = Plus / Minus Query: 21 agtacgagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggcaacg 80 |||| ||||||||||| ||| |||||||| |||||||| || ||||||||||| |||| | Sbjct: 30209 agtatgagttgcttgatgag-atgatggatttcgggtacccacaatacacggaagcaatg 30151 Query: 81 atcctgagtgagttcattaagacggatgcctacaggatggaggtcacccagaggccaccc 140 |||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||| ||| Sbjct: 30150 atcctgagcgagttcattaaaacggacgcgtacaggatggaggtcactcagaggccgccc 30091 Query: 141 atggcggtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaatgaa 200 ||||| || || || || |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 30090 atggcagtgacaaatgctgtgtcatggaggagcgaggggattcggtacaagaagaatgaa 30031 Query: 201 gtgtgataca 210 || ||||||| Sbjct: 30030 gtctgataca 30021 Score = 137 bits (69), Expect = 4e-29 Identities = 103/113 (91%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 391 agtggaatgccccgagtgtaaacttgggttgaatgatagagttcttttggaagctcaagg 450 |||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 29263 agtggaatgccc-gagtgcaaactggggttgaatgatagggttctcttggaggctcaagg 29205 Query: 451 ccgagcaactaaaggaaaagcaatagatctggatgatatcaaatttcatcagt 503 |||| ||||||||||||||||||||||| |||| ||||||||||| ||||||| Sbjct: 29204 ccgaacaactaaaggaaaagcaatagatttggacgatatcaaattccatcagt 29152 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Minus Query: 279 tgtgttgcaggtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgg 338 |||| |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct: 29952 tgtgctgcaggtgttcttggatgtggtggagagtgtcaatatcctcgttaacagcaatgg 29893 Query: 339 gcagattgtgagatctga 356 |||||| ||||| ||||| Sbjct: 29892 gcagatagtgaggtctga 29875
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 202 bits (102), Expect = 8e-49 Identities = 169/190 (88%), Gaps = 1/190 (0%) Strand = Plus / Minus Query: 21 agtacgagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggcaacg 80 |||| ||||||||||| ||| |||||||| |||||||| || ||||||||||| |||| | Sbjct: 26748270 agtatgagttgcttgatgag-atgatggatttcgggtacccacaatacacggaagcaatg 26748212 Query: 81 atcctgagtgagttcattaagacggatgcctacaggatggaggtcacccagaggccaccc 140 |||||||| ||||||||||| ||||| || ||||||||||||||||| |||||||| ||| Sbjct: 26748211 atcctgagcgagttcattaaaacggacgcgtacaggatggaggtcactcagaggccgccc 26748152 Query: 141 atggcggtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaatgaa 200 ||||| || || || || |||||||||||||||||||||||||| ||||||||||||||| Sbjct: 26748151 atggcagtgacaaatgctgtgtcatggaggagcgaggggattcggtacaagaagaatgaa 26748092 Query: 201 gtgtgataca 210 || ||||||| Sbjct: 26748091 gtctgataca 26748082 Score = 137 bits (69), Expect = 4e-29 Identities = 103/113 (91%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 391 agtggaatgccccgagtgtaaacttgggttgaatgatagagttcttttggaagctcaagg 450 |||||||||||| ||||| ||||| |||||||||||||| ||||| ||||| |||||||| Sbjct: 26747324 agtggaatgccc-gagtgcaaactggggttgaatgatagggttctcttggaggctcaagg 26747266 Query: 451 ccgagcaactaaaggaaaagcaatagatctggatgatatcaaatttcatcagt 503 |||| ||||||||||||||||||||||| |||| ||||||||||| ||||||| Sbjct: 26747265 ccgaacaactaaaggaaaagcaatagatttggacgatatcaaattccatcagt 26747213 Score = 107 bits (54), Expect = 4e-20 Identities = 72/78 (92%) Strand = Plus / Minus Query: 279 tgtgttgcaggtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgg 338 |||| |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct: 26748013 tgtgctgcaggtgttcttggatgtggtggagagtgtcaatatcctcgttaacagcaatgg 26747954 Query: 339 gcagattgtgagatctga 356 |||||| ||||| ||||| Sbjct: 26747953 gcagatagtgaggtctga 26747936
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 139 bits (70), Expect = 1e-29 Identities = 157/185 (84%), Gaps = 1/185 (0%) Strand = Plus / Plus Query: 18 tgcagtacgagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggca 77 ||||||| ||||||||||| || |||||||| || ||||| || |||||||||||||| Sbjct: 29160535 tgcagtatgagttgcttgatga-aatgatggattttgggtacccacaatacacggaggcg 29160593 Query: 78 acgatcctgagtgagttcattaagacggatgcctacaggatggaggtcacccagaggcca 137 | ||| | ||||| ||||||||||||||||| |||||||||||||| | ||||||||| Sbjct: 29160594 aaaatcttaagtgaattcattaagacggatgcgtacaggatggaggtatcacagaggcca 29160653 Query: 138 cccatggcggtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaat 197 || ||||| || || || || ||||||||| |||| ||||| ||||| |||||||||||| Sbjct: 29160654 cctatggcagtgacaaatgccgtgtcatggcggagtgagggtattcggtacaagaagaat 29160713 Query: 198 gaagt 202 ||||| Sbjct: 29160714 gaagt 29160718 Score = 129 bits (65), Expect = 1e-26 Identities = 102/113 (90%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 391 agtggaatgccccgagtgtaaacttgggttgaatgatagagttcttttggaagctcaagg 450 ||||||||||| ||||| |||||||| ||||| ||||| ||||||||||| |||||||| Sbjct: 29162140 agtggaatgcct-gagtgcaaacttggattgaacgatagggttcttttggaggctcaagg 29162198 Query: 451 ccgagcaactaaaggaaaagcaatagatctggatgatatcaaatttcatcagt 503 |||||| ||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 29162199 ccgagctactaaaggaaaagcaatagatcttgatgatattaaatttcaccagt 29162251 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Plus Query: 286 caggtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagatt 345 ||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||||| Sbjct: 29160793 caggtgttcttggatgttgtggagagtgttaacattcttgttaacagcaatgggcagatt 29160852 Query: 346 gtgagatctgacatcattggggctctgaagatgcgcacat 385 |||||||| || | ||||||| ||||||||||| |||| Sbjct: 29160853 gtgagatcagatgttgttggggcactgaagatgcggacat 29160892
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 139 bits (70), Expect = 1e-29 Identities = 157/185 (84%), Gaps = 1/185 (0%) Strand = Plus / Plus Query: 18 tgcagtacgagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggca 77 ||||||| ||||||||||| || |||||||| || ||||| || |||||||||||||| Sbjct: 120901 tgcagtatgagttgcttgatga-aatgatggattttgggtacccacaatacacggaggcg 120959 Query: 78 acgatcctgagtgagttcattaagacggatgcctacaggatggaggtcacccagaggcca 137 | ||| | ||||| ||||||||||||||||| |||||||||||||| | ||||||||| Sbjct: 120960 aaaatcttaagtgaattcattaagacggatgcgtacaggatggaggtatcacagaggcca 121019 Query: 138 cccatggcggtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaat 197 || ||||| || || || || ||||||||| |||| ||||| ||||| |||||||||||| Sbjct: 121020 cctatggcagtgacaaatgccgtgtcatggcggagtgagggtattcggtacaagaagaat 121079 Query: 198 gaagt 202 ||||| Sbjct: 121080 gaagt 121084 Score = 129 bits (65), Expect = 1e-26 Identities = 102/113 (90%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 391 agtggaatgccccgagtgtaaacttgggttgaatgatagagttcttttggaagctcaagg 450 ||||||||||| ||||| |||||||| ||||| ||||| ||||||||||| |||||||| Sbjct: 122506 agtggaatgcct-gagtgcaaacttggattgaacgatagggttcttttggaggctcaagg 122564 Query: 451 ccgagcaactaaaggaaaagcaatagatctggatgatatcaaatttcatcagt 503 |||||| ||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 122565 ccgagctactaaaggaaaagcaatagatcttgatgatattaaatttcaccagt 122617 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Plus Query: 286 caggtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagatt 345 ||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||||| Sbjct: 121159 caggtgttcttggatgttgtggagagtgttaacattcttgttaacagcaatgggcagatt 121218 Query: 346 gtgagatctgacatcattggggctctgaagatgcgcacat 385 |||||||| || | ||||||| ||||||||||| |||| Sbjct: 121219 gtgagatcagatgttgttggggcactgaagatgcggacat 121258
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684B02 Length = 132470 Score = 139 bits (70), Expect = 1e-29 Identities = 157/185 (84%), Gaps = 1/185 (0%) Strand = Plus / Plus Query: 18 tgcagtacgagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggca 77 ||||||| ||||||||||| || |||||||| || ||||| || |||||||||||||| Sbjct: 6322 tgcagtatgagttgcttgatga-aatgatggattttgggtacccacaatacacggaggcg 6380 Query: 78 acgatcctgagtgagttcattaagacggatgcctacaggatggaggtcacccagaggcca 137 | ||| | ||||| ||||||||||||||||| |||||||||||||| | ||||||||| Sbjct: 6381 aaaatcttaagtgaattcattaagacggatgcgtacaggatggaggtatcacagaggcca 6440 Query: 138 cccatggcggtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaat 197 || ||||| || || || || ||||||||| |||| ||||| ||||| |||||||||||| Sbjct: 6441 cctatggcagtgacaaatgccgtgtcatggcggagtgagggtattcggtacaagaagaat 6500 Query: 198 gaagt 202 ||||| Sbjct: 6501 gaagt 6505 Score = 129 bits (65), Expect = 1e-26 Identities = 102/113 (90%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 391 agtggaatgccccgagtgtaaacttgggttgaatgatagagttcttttggaagctcaagg 450 ||||||||||| ||||| |||||||| ||||| ||||| ||||||||||| |||||||| Sbjct: 7927 agtggaatgcct-gagtgcaaacttggattgaacgatagggttcttttggaggctcaagg 7985 Query: 451 ccgagcaactaaaggaaaagcaatagatctggatgatatcaaatttcatcagt 503 |||||| ||||||||||||||||||||||| |||||||| |||||||| |||| Sbjct: 7986 ccgagctactaaaggaaaagcaatagatcttgatgatattaaatttcaccagt 8038 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Plus Query: 286 caggtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagatt 345 ||||||||||||||||| || |||||||| ||||| || ||||||||||||||||||||| Sbjct: 6580 caggtgttcttggatgttgtggagagtgttaacattcttgttaacagcaatgggcagatt 6639 Query: 346 gtgagatctgacatcattggggctctgaagatgcgcacat 385 |||||||| || | ||||||| ||||||||||| |||| Sbjct: 6640 gtgagatcagatgttgttggggcactgaagatgcggacat 6679
>ref|NM_100949.1| Arabidopsis thaliana unknown protein AT1G10730 mRNA, complete cds Length = 1287 Score = 99.6 bits (50), Expect = 9e-18 Identities = 177/218 (81%), Gaps = 1/218 (0%) Strand = Plus / Plus Query: 292 ttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagattgtgaga 351 |||||||||||| | |||||||| || ||||| || ||||| |||||||| ||||| || Sbjct: 520 ttcttggatgtgatagagagtgtaaatatccttgtgaacagtaatgggcaaattgtcagg 579 Query: 352 tctgacatcattggggctctgaagatgcgcacatttctaagtggaatgccccgagtgtaa 411 ||||| || |||| ||| |||||||||| |||| | ||||||||||| |||||||| Sbjct: 580 tctgatgtcgttggagctttgaagatgcgaacatacttgagtggaatgcca-gagtgtaa 638 Query: 412 acttgggttgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaaagc 471 || || |||||||| ||| | | ||||| || || || ||||||| ||||||||||| Sbjct: 639 gctaggcttgaatgacagaatattgttggaggcacagggacgagcaataaaaggaaaagc 698 Query: 472 aatagatctggatgatatcaaatttcatcagtgtgttc 509 || ||| |||| || |||||||||||||||||||||| Sbjct: 699 cattgatttggaggacatcaaatttcatcagtgtgttc 736 Score = 44.1 bits (22), Expect = 0.44 Identities = 122/154 (79%), Gaps = 1/154 (0%) Strand = Plus / Plus Query: 26 gagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggcaacgatcct 85 ||||| ||||||||| ||||||||||| || || || || | || ||||||| ||||| Sbjct: 343 gagttacttgacgag-atgatggactttggttaccctcagtttactgaggcaagaatcct 401 Query: 86 gagtgagttcattaagacggatgcctacaggatggaggtcacccagaggccacccatggc 145 ||||| ||||| ||||| ||||| || || ||||| || || ||||| || || ||||| Sbjct: 402 tagtgaattcatcaagactgatgcatatagaatggaagttacacagagacctccaatggc 461 Query: 146 ggtcacgaacgcggtgtcatggaggagcgagggg 179 ||||| || | || ||||||||||| |||||| Sbjct: 462 tgtcactaattctgtctcatggaggagtgagggg 495
>ref|NM_104761.3| Arabidopsis thaliana unknown protein AT1G60780 mRNA, complete cds Length = 1897 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 420 tgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaaagcaatagatc 479 ||||||||||||| | ||||||| || || ||||||||||| |||||||| || ||| Sbjct: 921 tgaatgatagagtattgctggaagcgcagggacgagcaactaagggaaaagccattgatt 980 Query: 480 tggatgatatcaaatttcatcagtgtgttc 509 |||| || |||||||||||||||||||||| Sbjct: 981 tggaggacatcaaatttcatcagtgtgttc 1010 Score = 48.1 bits (24), Expect = 0.028 Identities = 93/116 (80%) Strand = Plus / Plus Query: 87 agtgagttcattaagacggatgcctacaggatggaggtcacccagaggccacccatggcg 146 ||||| ||||| ||||| ||||| || || ||||| || || ||||| || || ||||| Sbjct: 677 agtgaattcatcaagactgatgcatatagaatggaagttacacagagacctccaatggct 736 Query: 147 gtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaatgaagt 202 || ||||| || || || |||||||| ||||| || | ||||||||||||||||| Sbjct: 737 gtgacgaatgctgtctcctggaggagtgagggaatacagtacaagaagaatgaagt 792
>gb|AY099652.1| Arabidopsis thaliana clathrin adaptor medium chain protein MU1B, putative (At1g60780) mRNA, complete cds Length = 1690 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 420 tgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaaagcaatagatc 479 ||||||||||||| | ||||||| || || ||||||||||| |||||||| || ||| Sbjct: 840 tgaatgatagagtattgctggaagcgcagggacgagcaactaagggaaaagccattgatt 899 Query: 480 tggatgatatcaaatttcatcagtgtgttc 509 |||| || |||||||||||||||||||||| Sbjct: 900 tggaggacatcaaatttcatcagtgtgttc 929 Score = 48.1 bits (24), Expect = 0.028 Identities = 93/116 (80%) Strand = Plus / Plus Query: 87 agtgagttcattaagacggatgcctacaggatggaggtcacccagaggccacccatggcg 146 ||||| ||||| ||||| ||||| || || ||||| || || ||||| || || ||||| Sbjct: 596 agtgaattcatcaagactgatgcatatagaatggaagttacacagagacctccaatggct 655 Query: 147 gtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaatgaagt 202 || ||||| || || || |||||||| ||||| || | ||||||||||||||||| Sbjct: 656 gtgacgaatgctgtctcctggaggagtgagggaatacagtacaagaagaatgaagt 711
>gb|BT002144.1| Arabidopsis thaliana clathrin adaptor medium chain protein MU1B, putative (At1g60780) mRNA, complete cds Length = 1360 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Plus Query: 420 tgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaaagcaatagatc 479 ||||||||||||| | ||||||| || || ||||||||||| |||||||| || ||| Sbjct: 647 tgaatgatagagtattgctggaagcgcagggacgagcaactaagggaaaagccattgatt 706 Query: 480 tggatgatatcaaatttcatcagtgtgttc 509 |||| || |||||||||||||||||||||| Sbjct: 707 tggaggacatcaaatttcatcagtgtgttc 736 Score = 48.1 bits (24), Expect = 0.028 Identities = 93/116 (80%) Strand = Plus / Plus Query: 87 agtgagttcattaagacggatgcctacaggatggaggtcacccagaggccacccatggcg 146 ||||| ||||| ||||| ||||| || || ||||| || || ||||| || || ||||| Sbjct: 403 agtgaattcatcaagactgatgcatatagaatggaagttacacagagacctccaatggct 462 Query: 147 gtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaatgaagt 202 || ||||| || || || |||||||| ||||| || | ||||||||||||||||| Sbjct: 463 gtgacgaatgctgtctcctggaggagtgagggaatacagtacaagaagaatgaagt 518
>gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete sequence Length = 120787 Score = 63.9 bits (32), Expect = 5e-07 Identities = 71/84 (84%) Strand = Plus / Minus Query: 420 tgaatgatagagttcttttggaagctcaaggccgagcaactaaaggaaaagcaatagatc 479 ||||||||||||| | ||||||| || || ||||||||||| |||||||| || ||| Sbjct: 94437 tgaatgatagagtattgctggaagcgcagggacgagcaactaagggaaaagccattgatt 94378 Query: 480 tggatgatatcaaatttcatcagt 503 |||| || |||||||||||||||| Sbjct: 94377 tggaggacatcaaatttcatcagt 94354 Score = 50.1 bits (25), Expect = 0.007 Identities = 94/117 (80%) Strand = Plus / Minus Query: 87 agtgagttcattaagacggatgcctacaggatggaggtcacccagaggccacccatggcg 146 ||||| ||||| ||||| ||||| || || ||||| || || ||||| || || ||||| Sbjct: 94867 agtgaattcatcaagactgatgcatatagaatggaagttacacagagacctccaatggct 94808 Query: 147 gtcacgaacgcggtgtcatggaggagcgaggggattcgttacaagaagaatgaagtg 203 || ||||| || || || |||||||| ||||| || | |||||||||||||||||| Sbjct: 94807 gtgacgaatgctgtctcctggaggagtgagggaatacagtacaagaagaatgaagtg 94751
>gb|AC007354.3|T16B5 Arabidopsis thaliana chromosome 1 BAC T16B5 sequence, complete sequence Length = 70116 Score = 63.9 bits (32), Expect = 5e-07 Identities = 83/100 (83%) Strand = Plus / Minus Query: 286 caggtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagatt 345 ||||| |||||||||||| | |||||||| || ||||| || ||||| |||||||| ||| Sbjct: 48581 caggttttcttggatgtgatagagagtgtaaatatccttgtgaacagtaatgggcaaatt 48522 Query: 346 gtgagatctgacatcattggggctctgaagatgcgcacat 385 || || ||||| || |||| ||| |||||||||| |||| Sbjct: 48521 gtcaggtctgatgtcgttggagctttgaagatgcgaacat 48482 Score = 50.1 bits (25), Expect = 0.007 Identities = 128/161 (79%), Gaps = 1/161 (0%) Strand = Plus / Minus Query: 19 gcagtacgagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggcaa 78 |||||| ||||| ||||||||| ||||||||||| || || || || | || ||||||| Sbjct: 48833 gcagtatgagttacttgacgag-atgatggactttggttaccctcagtttactgaggcaa 48775 Query: 79 cgatcctgagtgagttcattaagacggatgcctacaggatggaggtcacccagaggccac 138 ||||| ||||| ||||| ||||| ||||| || || ||||| || || ||||| || | Sbjct: 48774 gaatccttagtgaattcatcaagactgatgcatatagaatggaagttacacagagacctc 48715 Query: 139 ccatggcggtcacgaacgcggtgtcatggaggagcgagggg 179 | ||||| ||||| || | || ||||||||||| |||||| Sbjct: 48714 caatggctgtcactaattctgtctcatggaggagtgagggg 48674 Score = 50.1 bits (25), Expect = 0.007 Identities = 92/113 (81%), Gaps = 1/113 (0%) Strand = Plus / Minus Query: 391 agtggaatgccccgagtgtaaacttgggttgaatgatagagttcttttggaagctcaagg 450 ||||||||||| |||||||| || || |||||||| ||| | | ||||| || || || Sbjct: 48384 agtggaatgcca-gagtgtaagctaggcttgaatgacagaatattgttggaggcacaggg 48326 Query: 451 ccgagcaactaaaggaaaagcaatagatctggatgatatcaaatttcatcagt 503 ||||||| ||||||||||| || ||| |||| || |||||||||||||||| Sbjct: 48325 acgagcaataaaaggaaaagccattgatttggaggacatcaaatttcatcagt 48273
>gb|AC009398.6|AC009398 Genomic sequence for Arabidopsis thaliana BAC F20B24 from chromosome I, complete sequence Length = 99416 Score = 63.9 bits (32), Expect = 5e-07 Identities = 83/100 (83%) Strand = Plus / Plus Query: 286 caggtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgggcagatt 345 ||||| |||||||||||| | |||||||| || ||||| || ||||| |||||||| ||| Sbjct: 66610 caggttttcttggatgtgatagagagtgtaaatatccttgtgaacagtaatgggcaaatt 66669 Query: 346 gtgagatctgacatcattggggctctgaagatgcgcacat 385 || || ||||| || |||| ||| |||||||||| |||| Sbjct: 66670 gtcaggtctgatgtcgttggagctttgaagatgcgaacat 66709 Score = 50.1 bits (25), Expect = 0.007 Identities = 92/113 (81%), Gaps = 1/113 (0%) Strand = Plus / Plus Query: 391 agtggaatgccccgagtgtaaacttgggttgaatgatagagttcttttggaagctcaagg 450 ||||||||||| |||||||| || || |||||||| ||| | | ||||| || || || Sbjct: 66807 agtggaatgcca-gagtgtaagctaggcttgaatgacagaatattgttggaggcacaggg 66865 Query: 451 ccgagcaactaaaggaaaagcaatagatctggatgatatcaaatttcatcagt 503 ||||||| ||||||||||| || ||| |||| || |||||||||||||||| Sbjct: 66866 acgagcaataaaaggaaaagccattgatttggaggacatcaaatttcatcagt 66918 Score = 50.1 bits (25), Expect = 0.007 Identities = 128/161 (79%), Gaps = 1/161 (0%) Strand = Plus / Plus Query: 19 gcagtacgagttgcttgacgagnatgatggacttcgggtatccgcaatacacggaggcaa 78 |||||| ||||| ||||||||| ||||||||||| || || || || | || ||||||| Sbjct: 66358 gcagtatgagttacttgacgag-atgatggactttggttaccctcagtttactgaggcaa 66416 Query: 79 cgatcctgagtgagttcattaagacggatgcctacaggatggaggtcacccagaggccac 138 ||||| ||||| ||||| ||||| ||||| || || ||||| || || ||||| || | Sbjct: 66417 gaatccttagtgaattcatcaagactgatgcatatagaatggaagttacacagagacctc 66476 Query: 139 ccatggcggtcacgaacgcggtgtcatggaggagcgagggg 179 | ||||| ||||| || | || ||||||||||| |||||| Sbjct: 66477 caatggctgtcactaattctgtctcatggaggagtgagggg 66517
>dbj|AP004918.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT13I21, TM0076a, complete sequence Length = 71794 Score = 48.1 bits (24), Expect = 0.028 Identities = 81/100 (81%) Strand = Plus / Plus Query: 404 gagtgtaaacttgggttgaatgatagagttcttttggaagctcaaggccgagcaactaaa 463 |||||||||||||| || ||||||||||| | || || || ||||| || |||| ||| Sbjct: 58301 gagtgtaaacttggcttaaatgatagagtattattagaggcgcaaggtagaacaaccaaa 58360 Query: 464 ggaaaagcaatagatctggatgatatcaaatttcatcagt 503 ||||| || ||||| |||| || ||||||||||| |||| Sbjct: 58361 ggaaaggcgatagacttggaagacatcaaatttcaccagt 58400 Score = 48.1 bits (24), Expect = 0.028 Identities = 45/52 (86%) Strand = Plus / Plus Query: 287 aggtgttcttggatgtggttgagagtgtcaacatcctagttaacagcaatgg 338 |||| |||||||||||||| |||||||| ||||| || || || |||||||| Sbjct: 57593 aggttttcttggatgtggtggagagtgtgaacatacttgtcaatagcaatgg 57644
>gb|AF003130.3| Caenorhabditis elegans cosmid F55A12, complete sequence Length = 45736 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Minus Query: 135 ccacccatggcggtcacgaacgcggtgtcatggag 169 ||||||||||| ||||| |||||||| |||||||| Sbjct: 4900 ccacccatggcagtcacaaacgcggtttcatggag 4866
>ref|NM_059171.4| Caenorhabditis elegans AdaPtin, Mu/medium chain (clathrin associated complex) family member (apm-1) (apm-1) mRNA, complete cds Length = 1602 Score = 46.1 bits (23), Expect = 0.11 Identities = 32/35 (91%) Strand = Plus / Plus Query: 135 ccacccatggcggtcacgaacgcggtgtcatggag 169 ||||||||||| ||||| |||||||| |||||||| Sbjct: 459 ccacccatggcagtcacaaacgcggtttcatggag 493
>gb|AC112503.7| Homo sapiens 3 BAC RP11-797D24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 86290 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 478 tctggatgatatcaaatttca 498 ||||||||||||||||||||| Sbjct: 82160 tctggatgatatcaaatttca 82180
>emb|BX883044.1| Rattus norvegicus chromosome 20, major histocompatibility complex, assembled from 40 BACs, strain Brown Norway (BN/ssNHsd), RT1n haplotype; segment 3/11 Length = 340493 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 gtcacccagaggccacccatg 143 ||||||||||||||||||||| Sbjct: 248701 gtcacccagaggccacccatg 248721 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 123 gtcacccagaggccacccatg 143 ||||||||||||||||||||| Sbjct: 248637 gtcacccagaggccacccatg 248657
>gb|AY255640.1| Mus musculus deubiquitinating enzyme Usp2-69 (Usp2) mRNA, complete cds; alternatively spliced Length = 2105 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tgagatctgacatcattggg 366 |||||||||||||||||||| Sbjct: 364 tgagatctgacatcattggg 383
>gb|AY255639.1| Mus musculus deubiquitinating enzyme Usp2-69 (Usp2) mRNA, complete cds; alternatively spliced Length = 2026 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tgagatctgacatcattggg 366 |||||||||||||||||||| Sbjct: 337 tgagatctgacatcattggg 356
>gb|AY255638.1| Mus musculus deubiquitinating enzyme Usp2-69 (Usp2) mRNA, complete cds; alternatively spliced Length = 2072 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tgagatctgacatcattggg 366 |||||||||||||||||||| Sbjct: 365 tgagatctgacatcattggg 384
>ref|NM_198092.1| Mus musculus ubiquitin specific peptidase 2 (Usp2), transcript variant 3, mRNA Length = 2026 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tgagatctgacatcattggg 366 |||||||||||||||||||| Sbjct: 337 tgagatctgacatcattggg 356
>gb|BC017517.1| Mus musculus ubiquitin specific peptidase 2, mRNA (cDNA clone MGC:27630 IMAGE:4506362), complete cds Length = 2115 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tgagatctgacatcattggg 366 |||||||||||||||||||| Sbjct: 365 tgagatctgacatcattggg 384
>gb|AC113542.13| Mus musculus chromosome 5, clone RP23-195A18, complete sequence Length = 215127 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 aggggattcgttacaagaagaatg 198 |||||||| ||||||||||||||| Sbjct: 35501 aggggatttgttacaagaagaatg 35478
>emb|CR378669.1| Photobacterium profundum SS9; segment 7/12 Length = 349285 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 gagcaactaaaggaaaagca 472 |||||||||||||||||||| Sbjct: 218843 gagcaactaaaggaaaagca 218862
>emb|AL935035.6| Zebrafish DNA sequence from clone CH211-180B22 in linkage group 20 Contains the 5' end of the gene for a novel protein similar to vertebrate meningioma expressed antigen 6 (coiled-coil proline-rich) (MGEA6), the gene for a novel protein similar to vertebrate melanoma inhibitory activity 2 (MIA2), the gene for a novel protein similar to mouse and human TATA box binding protein (TBP)-associated factor RNA polymerase I A 48kDa (TAF1A), the 3' end of the gene for a novel protein similar to vertebrate dual specificity phosphatase 10 (DUSP10) and four CpG islands, complete sequence Length = 151114 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 363 tggggctctgaagatgcgcacatt 386 ||||||| |||||||||||||||| Sbjct: 48915 tggggctatgaagatgcgcacatt 48938
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 122 ggtcacccagaggccacccatggcggtcacga 153 |||||||| ||||||||||||| |||||||| Sbjct: 4138466 ggtcacccgcaggccacccatggaggtcacga 4138435
>gb|AC108148.5| Homo sapiens BAC clone RP11-444B12 from 4, complete sequence Length = 93048 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 cacccagaggccacccatgg 144 |||||||||||||||||||| Sbjct: 34216 cacccagaggccacccatgg 34235
>dbj|AK138799.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430076C01 product:ubiquitin specific protease 2, full insert sequence Length = 2372 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tgagatctgacatcattggg 366 |||||||||||||||||||| Sbjct: 684 tgagatctgacatcattggg 703
>gb|AC009302.2| Homo sapiens BAC clone RP11-71J24 from 2, complete sequence Length = 180970 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 458 actaaaggaaaagcaataga 477 |||||||||||||||||||| Sbjct: 89853 actaaaggaaaagcaataga 89834
>dbj|AK182355.1| Mus musculus cDNA, clone:Y0G0121L02, strand:minus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000034508, based on BLAT search Length = 209 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tgagatctgacatcattggg 366 |||||||||||||||||||| Sbjct: 33 tgagatctgacatcattggg 52
>ref|XM_317947.2| Anopheles gambiae str. PEST ENSANGP00000020532 (ENSANGG00000018043), partial mRNA Length = 1391 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 141 atggcggtcacgaacgcggt 160 |||||||||||||||||||| Sbjct: 448 atggcggtcacgaacgcggt 467
>gb|AC076974.33| Mus musculus strain C57BL/6J chromosome 8 clone rp23-267j18, complete sequence Length = 211075 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 111 tacaggatggaggtcaccca 130 |||||||||||||||||||| Sbjct: 105338 tacaggatggaggtcaccca 105357
>gb|AC148328.3| Mus musculus BAC clone RP24-329C11 from 9, complete sequence Length = 167164 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 tgagatctgacatcattggg 366 |||||||||||||||||||| Sbjct: 67128 tgagatctgacatcattggg 67147 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,915,308 Number of Sequences: 3902068 Number of extensions: 3915308 Number of successful extensions: 88459 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88295 Number of HSP's gapped (non-prelim): 145 length of query: 509 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 487 effective length of database: 17,147,199,772 effective search space: 8350686288964 effective search space used: 8350686288964 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
