>VP282_ARATH (O65421) VPS28 protein homolog 2|
          Length = 209

 Score =  139 bits (350), Expect = 8e-33
 Identities = 68/95 (71%), Positives = 83/95 (87%)
 Frame = +2

Query: 2   AQCVQXFITAMDALKLNMLANDQVRPLLHDLSTSMGKLGTVLPPDFEGKVKVNEWLARLH 181
           A+CVQ FIT+MD+LKLNM+A DQV PLL DLS S+ KL ++LPPDFEGK+K+ EWL RL 
Sbjct: 115 AECVQNFITSMDSLKLNMVAVDQVYPLLSDLSASLNKL-SILPPDFEGKIKMKEWLLRLS 173

Query: 182 KMGAGDELTDQQARQLNFDLESAYSAFMASLPTAG 286
           KMGA DELT+QQARQL+FDLES+Y++FMA+LP AG
Sbjct: 174 KMGASDELTEQQARQLHFDLESSYNSFMAALPNAG 208

>VP281_ARATH (Q9S9T7) VPS28 protein homolog 1|
          Length = 209

 Score =  137 bits (345), Expect = 3e-32
 Identities = 67/95 (70%), Positives = 83/95 (87%)
 Frame = +2

Query: 2   AQCVQXFITAMDALKLNMLANDQVRPLLHDLSTSMGKLGTVLPPDFEGKVKVNEWLARLH 181
           A+CVQ FIT+MD+LKLNM+A DQV PLL DLS S+ KL ++LPPDFEGK K+ EWL+RL 
Sbjct: 115 AECVQNFITSMDSLKLNMVAVDQVYPLLSDLSASLNKL-SILPPDFEGKTKMKEWLSRLS 173

Query: 182 KMGAGDELTDQQARQLNFDLESAYSAFMASLPTAG 286
           KMGA DELT+QQ+RQL+FDLES+Y++FMA+LP AG
Sbjct: 174 KMGAADELTEQQSRQLHFDLESSYNSFMAALPKAG 208

>VPS28_MOUSE (Q9D1C8) VPS28 protein homolog (Caspase-activated DNase inhibitor|
           that interacts with ASK1) (CIIA)
          Length = 221

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 44/87 (50%), Positives = 58/87 (66%)
 Frame = +2

Query: 2   AQCVQXFITAMDALKLNMLANDQVRPLLHDLSTSMGKLGTVLPPDFEGKVKVNEWLARLH 181
           A  V  FIT MD L+L + A D+++P L +L  +M ++   LPPDFEG+  V++WL  L 
Sbjct: 130 ADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSH-LPPDFEGRQTVSQWLQTLS 188

Query: 182 KMGAGDELTDQQARQLNFDLESAYSAF 262
            M A DEL D Q RQ+ FDLESAY+AF
Sbjct: 189 GMSASDELDDSQVRQMLFDLESAYNAF 215

>VPS28_HUMAN (Q9UK41) VPS28 protein homolog|
          Length = 221

 Score = 85.5 bits (210), Expect = 1e-16
 Identities = 44/87 (50%), Positives = 58/87 (66%)
 Frame = +2

Query: 2   AQCVQXFITAMDALKLNMLANDQVRPLLHDLSTSMGKLGTVLPPDFEGKVKVNEWLARLH 181
           A  V  FIT MD L+L + A D+++P L +L  +M ++   LPPDFEG+  V++WL  L 
Sbjct: 130 ADVVSLFITVMDKLRLEIRAMDEIQPDLRELMETMHRMSH-LPPDFEGRQTVSQWLQTLS 188

Query: 182 KMGAGDELTDQQARQLNFDLESAYSAF 262
            M A DEL D Q RQ+ FDLESAY+AF
Sbjct: 189 GMSASDELDDSQVRQMLFDLESAYNAF 215

>VPS28_YEAST (Q02767) Vacuolar protein sorting-associated protein VPS28|
          Length = 242

 Score = 80.5 bits (197), Expect = 4e-15
 Identities = 43/91 (47%), Positives = 58/91 (63%)
 Frame = +2

Query: 2   AQCVQXFITAMDALKLNMLANDQVRPLLHDLSTSMGKLGTVLPPDFEGKVKVNEWLARLH 181
           A+    FIT MDALKLN  A DQ+ PLL +L  S+ +   V   DFE + K+ +W+ R++
Sbjct: 154 AEATGNFITVMDALKLNYNAKDQLHPLLAELLISINR---VTRDDFENRSKLIDWIVRIN 210

Query: 182 KMGAGDELTDQQARQLNFDLESAYSAFMASL 274
           K+  GD LT+ Q R+L FDLE AY +F A L
Sbjct: 211 KLSIGDTLTETQIRELLFDLELAYKSFYALL 241

>VPS28_DROME (Q9V359) VPS28 protein homolog|
          Length = 210

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 40/87 (45%), Positives = 60/87 (68%)
 Frame = +2

Query: 2   AQCVQXFITAMDALKLNMLANDQVRPLLHDLSTSMGKLGTVLPPDFEGKVKVNEWLARLH 181
           A+ V  FIT MD L+L +   D ++P + DL+ +M +L +++P DF+ K+KV +WL  L+
Sbjct: 118 AEIVSLFITIMDKLRLQINTMDALQPDVKDLADNMNRL-SLIPEDFDAKLKVEKWLGSLN 176

Query: 182 KMGAGDELTDQQARQLNFDLESAYSAF 262
           +M A DEL++ Q RQ  FDLESAY+ F
Sbjct: 177 EMQASDELSEGQVRQFLFDLESAYADF 203

>VPS28_CAEEL (Q9NA26) VPS28 protein homolog|
          Length = 210

 Score = 70.5 bits (171), Expect = 5e-12
 Identities = 41/91 (45%), Positives = 54/91 (59%)
 Frame = +2

Query: 2   AQCVQXFITAMDALKLNMLANDQVRPLLHDLSTSMGKLGTVLPPDFEGKVKVNEWLARLH 181
           A  V+ FIT +DAL+LN  A D + P L DL  ++     V P D     KV +W  RL 
Sbjct: 116 ASIVEQFITFLDALRLNTRAVDDLYPGLDDLYNAINTTSRV-PIDAIVTTKVKKWHDRLS 174

Query: 182 KMGAGDELTDQQARQLNFDLESAYSAFMASL 274
            M A DE++D+ ARQ+ FD+ESAY AF  +L
Sbjct: 175 SMAASDEISDEDARQMIFDVESAYQAFNKAL 205

>VPS28_SCHPO (O13872) Vacuolar protein sorting-associated protein VPS28 homolog|
          Length = 248

 Score = 69.3 bits (168), Expect = 1e-11
 Identities = 35/85 (41%), Positives = 52/85 (61%)
 Frame = +2

Query: 2   AQCVQXFITAMDALKLNMLANDQVRPLLHDLSTSMGKLGTVLPPDFEGKVKVNEWLARLH 181
           A  VQ FIT +DA++LN +A DQ+ PLL +L  SM  L   L      + K+ +WL +++
Sbjct: 158 AGLVQNFITTLDAIRLNFIAKDQLHPLLSELIVSMDDLTESLKIQVSCRNKLVQWLIKIN 217

Query: 182 KMGAGDELTDQQARQLNFDLESAYS 256
            M   D+L D + R+L +DLE AY+
Sbjct: 218 NMNITDQLNDVEKRELLYDLEQAYA 242

>SAHH_NITEU (Q82WL1) Adenosylhomocysteinase (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
          Length = 478

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 8/52 (15%)
 Frame = +2

Query: 134 DFEGKV-----KVNEWLARLH--KMGAG-DELTDQQARQLNFDLESAYSAFM 265
           D++ KV     +++E +ARLH  K+G    ELTD+QA  LN D    Y   M
Sbjct: 424 DYQKKVYVLPKRLDEMVARLHLGKLGVKLTELTDEQAHYLNLDKNGPYKPEM 475

>DAK1_YEAST (P54838) Dihydroxyacetone kinase 1 (EC 2.7.1.29) (Glycerone kinase|
           1) (DHA kinase 1)
          Length = 584

 Score = 30.0 bits (66), Expect = 6.9
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -3

Query: 316 RRTNSDHSSHASSGKRGHKRTIS*FQIKIELSGLLICELVPSPHLMQ 176
           R+T+SD  +  S G  GH+ T + F  K  LSG ++ E+  SP   Q
Sbjct: 37  RKTDSDKIALISGGGSGHEPTHAGFIGKGMLSGAVVGEIFASPSTKQ 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,756,808
Number of Sequences: 219361
Number of extensions: 1878110
Number of successful extensions: 4908
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4903
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6769072002
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)