ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal9n15 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_001013425.1| Canis familiaris keratin 10 (epidermolytic hyperkeratosis; keratosis palmaris et plantaris) (KRT10), mRNA Length = 1707 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 244 cccgccgccgtagcctccgccgccgga 270 ||||||||||||||| ||||||||||| Sbjct: 1371 cccgccgccgtagccgccgccgccgga 1345 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccgga 270 |||||||||||||| ||||||||||| Sbjct: 1460 ccgccgccgtagccgccgccgccgga 1435
>ref|XM_470324.1| Oryza sativa (japonica cultivar-group), mRNA Length = 630 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 241 ccacccgccgccgtagcctccgccgcc 267 |||||||||||||| |||||||||||| Sbjct: 182 ccacccgccgccgttgcctccgccgcc 156
>gb|AY318944.1| Canis familiaris epithelial keratin 10 (Ker10) gene, complete cds Length = 4947 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 244 cccgccgccgtagcctccgccgccgga 270 ||||||||||||||| ||||||||||| Sbjct: 3665 cccgccgccgtagccgccgccgccgga 3639 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccgga 270 |||||||||||||| ||||||||||| Sbjct: 3754 ccgccgccgtagccgccgccgccgga 3729
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 241 ccacccgccgccgtagcctccgccgcc 267 |||||||||||||| |||||||||||| Sbjct: 34768438 ccacccgccgccgttgcctccgccgcc 34768412 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgagctgctggcggcgctcg 340 |||||||||||||||||||| Sbjct: 28218058 cgagctgctggcggcgctcg 28218077
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 241 ccacccgccgccgtagcctccgccgcc 267 |||||||||||||| |||||||||||| Sbjct: 94212 ccacccgccgccgttgcctccgccgcc 94238
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 241 ccacccgccgccgtagcctccgccgcc 267 |||||||||||||| |||||||||||| Sbjct: 1231811 ccacccgccgccgttgcctccgccgcc 1231837 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cgccgtagcctccgccgccg 268 |||||||||||||||||||| Sbjct: 8496728 cgccgtagcctccgccgccg 8496747
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 241 ccacccgccgccgtagcctccgccgcc 267 |||||||||||||| |||||||||||| Sbjct: 34858510 ccacccgccgccgttgcctccgccgcc 34858484 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgagctgctggcggcgctcg 340 |||||||||||||||||||| Sbjct: 28309382 cgagctgctggcggcgctcg 28309401
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 241 ccacccgccgccgtagcctccgccgcc 267 |||||||||||||| |||||||||||| Sbjct: 1231811 ccacccgccgccgttgcctccgccgcc 1231837 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cgccgtagcctccgccgccg 268 |||||||||||||||||||| Sbjct: 8496611 cgccgtagcctccgccgccg 8496630
>emb|BX000509.2|CNS08CDZ Oryza sativa chromosome 12, . BAC OJ1085_G07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 121556 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Minus Query: 241 ccacccgccgccgtagcctccgccgcc 267 |||||||||||||| |||||||||||| Sbjct: 60971 ccacccgccgccgttgcctccgccgcc 60945
>ref|XM_472663.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1248 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccgga 270 ||||||||| |||||||||||||||| Sbjct: 372 ccgccgccgcagcctccgccgccgga 347
>gb|AC097447.4| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0042K08, complete sequence Length = 117839 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 247 gccgccgtagcctccgccgccg 268 |||||||||||||||||||||| Sbjct: 26762 gccgccgtagcctccgccgccg 26783
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 245 ccgccgccgtagcctccgccgccgga 270 ||||||||| |||||||||||||||| Sbjct: 21580 ccgccgccgcagcctccgccgccgga 21605
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 245 ccgccgccgtagcctccgccgccgga 270 ||||||||| |||||||||||||||| Sbjct: 22417825 ccgccgccgcagcctccgccgccgga 22417850
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 247 gccgccgtagcctccgccgccg 268 |||||||||||||||||||||| Sbjct: 3911994 gccgccgtagcctccgccgccg 3912015
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 44.1 bits (22), Expect = 0.40 Identities = 28/30 (93%) Strand = Plus / Minus Query: 317 ccgccgagctgctggcggcgctcgtacgcg 346 ||||||||| ||||||||||||||| |||| Sbjct: 2812421 ccgccgagcggctggcggcgctcgtgcgcg 2812392
>dbj|AK121979.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108K14, full insert sequence Length = 1547 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccgga 270 ||||||||| |||||||||||||||| Sbjct: 513 ccgccgccgcagcctccgccgccgga 488
>dbj|AK063451.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G01, full insert sequence Length = 1568 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 247 gccgccgtagcctccgccgccg 268 |||||||||||||||||||||| Sbjct: 25 gccgccgtagcctccgccgccg 46
>emb|BX950172.16| Zebrafish DNA sequence from clone DKEY-20F24 in linkage group 6, complete sequence Length = 231139 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 120 gcatacacatgcaggagaatga 141 |||||||||||||||||||||| Sbjct: 200652 gcatacacatgcaggagaatga 200673
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 247 gccgccgtagcctccgccgccg 268 |||||||||||||||||||||| Sbjct: 3911915 gccgccgtagcctccgccgccg 3911936
>ref|XM_479603.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1219 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 cctccgccgccggagtacccc 277 ||||||||||||||||||||| Sbjct: 210 cctccgccgccggagtacccc 190
>ref|XM_368644.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00600.4) partial mRNA Length = 615 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 gtcgctgtcgtcctcgctctc 450 ||||||||||||||||||||| Sbjct: 549 gtcgctgtcgtcctcgctctc 529
>gb|AC149162.3| Xenopus tropicalis clone ISB-362P17, complete sequence Length = 90513 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 78 ttatttagacacttttgcaat 98 ||||||||||||||||||||| Sbjct: 16760 ttatttagacacttttgcaat 16740
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 315 cgccgccgagctgctggcggc 335 ||||||||||||||||||||| Sbjct: 46170 cgccgccgagctgctggcggc 46190
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 cctccgccgccggagtacccc 277 ||||||||||||||||||||| Sbjct: 29150769 cctccgccgccggagtacccc 29150789
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1150_E04 Length = 130973 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 cctccgccgccggagtacccc 277 ||||||||||||||||||||| Sbjct: 85887 cctccgccgccggagtacccc 85907
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1200_C08 Length = 106214 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 cctccgccgccggagtacccc 277 ||||||||||||||||||||| Sbjct: 98726 cctccgccgccggagtacccc 98746
>dbj|AB126048.1| Kitasatospora setae genes for homolog of putative metallopeptidase protein, hypothetical protein, ksbA, BarB homolog, putative RNA polymerase ECF-family sigma factor protein, homolog of methylated-DNA-protein-cysteine methyltransferase protein, partial and complete cds Length = 6997 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 245 ccgccgccgtagcctccgccgccgg 269 ||||||||| ||||||||||||||| Sbjct: 3444 ccgccgccggagcctccgccgccgg 3468
>dbj|AK073043.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150G03, full insert sequence Length = 1219 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 cctccgccgccggagtacccc 277 ||||||||||||||||||||| Sbjct: 210 cctccgccgccggagtacccc 190
>gb|AF036942.1|AF036942 Gallus gallus photoreceptor guanylate cyclase 1 (GC1) mRNA, partial cds Length = 3672 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 316 gccgccgagctgctggcggcg 336 ||||||||||||||||||||| Sbjct: 238 gccgccgagctgctggcggcg 258
>gb|L03213.1|STMGLNR Streptomyces coelicolor transcription factor (glnR) gene, complete cds; lac repressor-like protein, 5' end Length = 1682 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 315 cgccgccgagctgctggcggc 335 ||||||||||||||||||||| Sbjct: 997 cgccgccgagctgctggcggc 977
>gb|AY730687.1| Oryza sativa (japonica cultivar-group) FCA (FCA) mRNA, complete cds Length = 2527 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gtagcctccgccgccggagt 272 |||||||||||||||||||| Sbjct: 310 gtagcctccgccgccggagt 291
>gb|AY677378.1| Rhizobium tropici plasmid pSym origin of replication Length = 3769 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 319 gccgagctgctggcggcgct 338 |||||||||||||||||||| Sbjct: 2655 gccgagctgctggcggcgct 2636
>ref|XM_465944.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1262 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 cgccgccgtagcctccgccgccgg 269 ||||||||||||| |||||||||| Sbjct: 510 cgccgccgtagccgccgccgccgg 487
>ref|XM_450108.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2632 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gtagcctccgccgccggagt 272 |||||||||||||||||||| Sbjct: 357 gtagcctccgccgccggagt 338
>ref|XM_469478.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2109 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgagctgctggcggcgctcg 340 |||||||||||||||||||| Sbjct: 348 cgagctgctggcggcgctcg 367
>ref|XM_367108.1| Magnaporthe grisea 70-15 hypothetical protein (MG07033.4) partial mRNA Length = 1938 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccg 268 |||||||||||||| ||||||||| Sbjct: 1889 ccgccgccgtagccgccgccgccg 1866
>ref|XM_419969.1| PREDICTED: Gallus gallus LOC421957 (LOC421957), mRNA Length = 1131 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccgccgagctgctggcggcg 336 |||||||||||||||||||| Sbjct: 29 ccgccgagctgctggcggcg 48
>gb|AY654584.1| Oryza sativa (japonica cultivar-group) FCA gamma protein (FCA) mRNA, complete cds Length = 3112 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gtagcctccgccgccggagt 272 |||||||||||||||||||| Sbjct: 538 gtagcctccgccgccggagt 519
>ref|XM_706501.1| Candida albicans SC5314 hypothetical protein (CaO19.3373), mRNA Length = 1872 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 245 ccgccgccgtagcctccgccgccg 268 |||||||||||||| ||||||||| Sbjct: 1649 ccgccgccgtagccgccgccgccg 1672
>ref|XM_980712.1| PREDICTED: Mus musculus R-spondin homolog (Xenopus laevis) (Rspo1), mRNA Length = 1354 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 caggtgggcaggacggcagg 207 |||||||||||||||||||| Sbjct: 244 caggtgggcaggacggcagg 225
>gb|AC122206.4| Mus musculus BAC clone RP23-77G15 from 8, complete sequence Length = 204149 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 atgcaggagaatgagcaggt 147 |||||||||||||||||||| Sbjct: 129945 atgcaggagaatgagcaggt 129926
>ref|XM_966372.1| PREDICTED: Tribolium castaneum similar to Tubulin tyrosine ligase-like protein 2 (Testis-specific protein NYD-TSPG) (LOC660112), mRNA Length = 12990 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccg 268 |||||||||||||| ||||||||| Sbjct: 12587 ccgccgccgtagccgccgccgccg 12564
>emb|Z48624.1|HVGRP3 H.vulgare mRNA for glycine-rich RNA binding protein Length = 907 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgcc 264 |||||||||||||||||||| Sbjct: 382 ccgccgccgtagcctccgcc 363
>gb|AF023889.1| HIV-2 100 isolate from Guinea-Bissau, envelope glycoprotein V3 region (env) gene, partial cds Length = 233 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ttgtaccgataacacttatg 44 |||||||||||||||||||| Sbjct: 70 ttgtaccgataacacttatg 89
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 cgccgccgtagcctccgccg 265 |||||||||||||||||||| Sbjct: 3467540 cgccgccgtagcctccgccg 3467521
>emb|X02870.1|BTKER6B Bovine gene for cytokeratin VIb Length = 5726 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccg 268 |||||||||||||| ||||||||| Sbjct: 4485 ccgccgccgtagccgccgccgccg 4462
>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29 Length = 292200 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 cgccgccgagctgctggcggcgct 338 ||||||||| |||||||||||||| Sbjct: 262654 cgccgccgacctgctggcggcgct 262631
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 actgcgtgccgccgggcatggtgc 377 |||||| ||||||||||||||||| Sbjct: 6281078 actgcgcgccgccgggcatggtgc 6281055
>gb|AF460219.1| Hordeum vulgare subsp. vulgare nuclear transcription factor SLN1 gene, complete cds Length = 4098 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgagctgctggcggcgctcg 340 |||||||||||||||||||| Sbjct: 1881 cgagctgctggcggcgctcg 1900
>dbj|AB231906.2| Sphingomonas sp. A1 plasmid pA1 DNA, complete sequence Length = 46557 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 gctcccgccgccgagctgct 329 |||||||||||||||||||| Sbjct: 20903 gctcccgccgccgagctgct 20922
>dbj|AK132277.1| Mus musculus 18 days pregnant adult female placenta and extra embryonic tissue cDNA, RIKEN full-length enriched library, clone:3830420K20 product:thrombospondin type 1 domain containing gene, full insert sequence Length = 1775 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 caggtgggcaggacggcagg 207 |||||||||||||||||||| Sbjct: 673 caggtgggcaggacggcagg 654
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccgccgagctgctggcggcg 336 |||||||||||||||||||| Sbjct: 2665085 ccgccgagctgctggcggcg 2665104
>gb|AC087797.5| Oryza sativa chromosome 3 BAC OSJNBb0022E02 genomic sequence, complete sequence Length = 122497 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgagctgctggcggcgctcg 340 |||||||||||||||||||| Sbjct: 69199 cgagctgctggcggcgctcg 69218
>gb|U32310.1|TAU32310 Triticum aestivum single-stranded nucleic acid binding protein (whGRP-1) gene, complete cds Length = 937 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgcc 264 |||||||||||||||||||| Sbjct: 429 ccgccgccgtagcctccgcc 410
>emb|BX932732.2| Gallus gallus finished cDNA, clone ChEST499o6 Length = 604 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccgccgagctgctggcggcg 336 |||||||||||||||||||| Sbjct: 42 ccgccgagctgctggcggcg 61
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gtagcctccgccgccggagt 272 |||||||||||||||||||| Sbjct: 1737695 gtagcctccgccgccggagt 1737676
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 ccacccgccgccgtagcctccgccgccg 268 ||||||||||||| |||| ||||||||| Sbjct: 9751149 ccacccgccgccgcagccgccgccgccg 9751176
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 cgccgccgtagcctccgccgccgg 269 ||||||||| |||||||||||||| Sbjct: 6926597 cgccgccgtggcctccgccgccgg 6926574
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cgccgccgtagcctccgccgccgg 269 ||||||||||||| |||||||||| Sbjct: 18471990 cgccgccgtagccgccgccgccgg 18472013
>ref|NM_174377.1| Bos taurus keratin 10 (epidermolytic hyperkeratosis) (KRT10), mRNA Length = 1581 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccg 268 |||||||||||||| ||||||||| Sbjct: 1394 ccgccgccgtagccgccgccgccg 1371
>emb|BX931048.1| Gallus gallus finished cDNA, clone ChEST208h4 Length = 622 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccgccgagctgctggcggcg 336 |||||||||||||||||||| Sbjct: 42 ccgccgagctgctggcggcg 61
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cgccgtagcctccgccgccg 268 |||||||||||||||||||| Sbjct: 8905083 cgccgtagcctccgccgccg 8905064 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 317 ccgccgagctgctggcggcg 336 |||||||||||||||||||| Sbjct: 5437459 ccgccgagctgctggcggcg 5437478
>dbj|AP005522.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0479H10 Length = 139874 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 cgccgccgtagcctccgccgccgg 269 ||||||||| |||||||||||||| Sbjct: 116122 cgccgccgtggcctccgccgccgg 116099
>dbj|AP006062.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0415D04 Length = 176627 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gtagcctccgccgccggagt 272 |||||||||||||||||||| Sbjct: 124267 gtagcctccgccgccggagt 124248
>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1789_D08 Length = 128673 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cgccgccgtagcctccgccgccgg 269 ||||||||||||| |||||||||| Sbjct: 13129 cgccgccgtagccgccgccgccgg 13152
>dbj|AP004861.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0001A11 Length = 153252 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 cgccgccgtagcctccgccgccgg 269 ||||||||||||| |||||||||| Sbjct: 134914 cgccgccgtagccgccgccgccgg 134937
>gb|AY311344.1| Oryza sativa (indica cultivar-group) flowering time control protein isoform OsFCA-2 mRNA, complete cds, alternatively spliced Length = 2635 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gtagcctccgccgccggagt 272 |||||||||||||||||||| Sbjct: 299 gtagcctccgccgccggagt 280
>gb|AY274928.1| Oryza sativa (indica cultivar-group) flowering time control protein isoform OsFCA-1 mRNA, complete cds, alternatively spliced Length = 2538 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gtagcctccgccgccggagt 272 |||||||||||||||||||| Sbjct: 299 gtagcctccgccgccggagt 280
>emb|AJ008308.1|HIV8308 Human immunodeficiency virus type 2 partial env gene, isolate b1236 Length = 353 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ttgtaccgataacacttatg 44 |||||||||||||||||||| Sbjct: 134 ttgtaccgataacacttatg 153
>dbj|AB016768.1| Mus musculus mRNA for thrombospondin type 1 domain, complete cds Length = 1834 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 caggtgggcaggacggcagg 207 |||||||||||||||||||| Sbjct: 726 caggtgggcaggacggcagg 707
>dbj|AK119963.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-D06, full insert sequence Length = 1063 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 249 cgccgtagcctccgccgccg 268 |||||||||||||||||||| Sbjct: 268 cgccgtagcctccgccgccg 249
>dbj|AP005095.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1063H10 Length = 170453 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 ccacccgccgccgtagcctccgccgccg 268 ||||||||||||| |||| ||||||||| Sbjct: 15081 ccacccgccgccgcagccgccgccgccg 15108
>dbj|AP005123.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1015H11 Length = 156897 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 241 ccacccgccgccgtagcctccgccgccg 268 ||||||||||||| |||| ||||||||| Sbjct: 148629 ccacccgccgccgcagccgccgccgccg 148656
>emb|AJ242531.1|TAE242531 Triticum aestivum rht-D1a gene for gibberellin response modulator Length = 1872 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgagctgctggcggcgctcg 340 |||||||||||||||||||| Sbjct: 114 cgagctgctggcggcgctcg 133
>dbj|AK110107.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-A04, full insert sequence Length = 3534 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccg 268 |||||||||||||| ||||||||| Sbjct: 2487 ccgccgccgtagccgccgccgccg 2464 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccg 268 |||||||||||||| ||||||||| Sbjct: 2469 ccgccgccgtagccgccgccgccg 2446
>dbj|AK108786.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-B01, full insert sequence Length = 1262 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 cgccgccgtagcctccgccgccgg 269 ||||||||||||| |||||||||| Sbjct: 510 cgccgccgtagccgccgccgccgg 487
>dbj|AK073225.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023C04, full insert sequence Length = 2632 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 gtagcctccgccgccggagt 272 |||||||||||||||||||| Sbjct: 357 gtagcctccgccgccggagt 338
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 238 cgcccacccgccgccgtagcctcc 261 |||||| ||||||||||||||||| Sbjct: 11262 cgcccagccgccgccgtagcctcc 11285
>dbj|AK063118.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-E04, full insert sequence Length = 586 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 cgccgccgtagcctccgccgccgg 269 ||||||||| |||||||||||||| Sbjct: 79 cgccgccgtggcctccgccgccgg 56
>emb|AL442113.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete sequence Length = 102515 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 gccgtagcctccgccgccgg 269 |||||||||||||||||||| Sbjct: 31578 gccgtagcctccgccgccgg 31559
>gb|AY781175.1| Oryza sativa (indica cultivar-group) gibberellic acid-insensitive (GAI) gene, promoter region and complete cds Length = 3494 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgagctgctggcggcgctcg 340 |||||||||||||||||||| Sbjct: 1620 cgagctgctggcggcgctcg 1639
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgagctgctggcggcgctcg 340 |||||||||||||||||||| Sbjct: 1933452 cgagctgctggcggcgctcg 1933471
>gb|AC104883.16| Mus musculus chromosome 8, clone RP24-263A8, complete sequence Length = 198707 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 atgcaggagaatgagcaggt 147 |||||||||||||||||||| Sbjct: 5225 atgcaggagaatgagcaggt 5206
>emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa0030N06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146444 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 cgccgtagcctccgccgccg 268 |||||||||||||||||||| Sbjct: 103391 cgccgtagcctccgccgccg 103410
>ref|NM_138683.1| Mus musculus R-spondin homolog (Xenopus laevis) (Rspo1), mRNA Length = 1834 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 caggtgggcaggacggcagg 207 |||||||||||||||||||| Sbjct: 726 caggtgggcaggacggcagg 707
>gb|U49482.1|HVU49482 Hordeum vulgare low temperature-responsive RNA-binding protein (blt801) mRNA, complete cds Length = 806 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccg 268 |||||||||||||| ||||||||| Sbjct: 497 ccgccgccgtagccgccgccgccg 474
>emb|AL928843.9| Zebrafish DNA sequence from clone DKEY-7P8 in linkage group 7, complete sequence Length = 179577 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 gcatacacatgcaggagaat 139 |||||||||||||||||||| Sbjct: 65518 gcatacacatgcaggagaat 65499
>emb|AL626775.11| Mouse DNA sequence from clone RP23-325M14 on chromosome 4, complete sequence Length = 190641 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 caggtgggcaggacggcagg 207 |||||||||||||||||||| Sbjct: 49486 caggtgggcaggacggcagg 49467
>emb|X01460.1|BTKERVIB Bovine mRNA 3' region for epidermal keratin VIb Length = 1101 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 ccgccgccgtagcctccgccgccg 268 |||||||||||||| ||||||||| Sbjct: 554 ccgccgccgtagccgccgccgccg 531
>dbj|AB030956.1| Oryza sativa (japonica cultivar-group) mRNA for OsGAI, complete cds Length = 2500 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 321 cgagctgctggcggcgctcg 340 |||||||||||||||||||| Sbjct: 332 cgagctgctggcggcgctcg 351 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,431,835 Number of Sequences: 3902068 Number of extensions: 3431835 Number of successful extensions: 69182 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67809 Number of HSP's gapped (non-prelim): 1373 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
