Clone Name	bags15j07
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AK066695.1| Oryza sativa (japonica cultivar-group) cDNA clon...	389	e-105
2	dbj|AK063158.1| Oryza sativa (japonica cultivar-group) cDNA clon...	389	e-105
3	dbj|AB070254.1| Oryza sativa (japonica cultivar-group) OsRPT4b m...	389	e-105
4	gb|AY109445.1| Zea mays CL337_1 mRNA sequence	184	2e-43
5	gb|BT018476.1| Zea mays clone EL01N0423G12.d mRNA sequence	165	2e-37
6	ref|XM_464508.1| Oryza sativa (japonica cultivar-group), mRNA	145	2e-31
7	dbj|AK104698.1| Oryza sativa (japonica cultivar-group) cDNA clon...	145	2e-31
8	dbj|AK099357.1| Oryza sativa (japonica cultivar-group) cDNA clon...	145	2e-31
9	dbj|AK067026.1| Oryza sativa (japonica cultivar-group) cDNA clon...	145	2e-31
10	dbj|AB033536.1| Oryza sativa (japonica cultivar-group) OsRPT4 mR...	145	2e-31
11	dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...	139	1e-29
12	dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic D...	139	1e-29
13	dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic D...	139	1e-29
14	gb|DQ191627.1| Solanum tuberosum 26S proteasome AAA-ATPase subun...	129	1e-26
15	dbj|AB061249.1| Solanum tuberosum StRPT4a mRNA for 26S proteasom...	129	1e-26
16	dbj|AB120534.1| Nicotiana tabacum mRNA, transcriptionally up-reg...	109	1e-20
17	dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D...	86	2e-13
18	dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic D...	86	2e-13
19	dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic D...	86	2e-13
20	gb|AF220406.1|AF220406 Vitis riparia 26S proteasome regulatory A...	78	4e-11
21	ref|NM_123667.2| Arabidopsis thaliana RPT4A; ATPase AT5G43010 (R...	76	2e-10
22	gb|AY078040.1| Arabidopsis thaliana AT5g43010/MBD2_21 mRNA, comp...	76	2e-10
23	gb|AF372945.1|AF372945 Arabidopsis thaliana AT5g43010/MBD2_21 mR...	76	2e-10
24	gb|AF123393.1|AF123393 Arabidopsis thaliana 26S proteasome AAA-A...	76	2e-10
25	emb|BX830758.1|CNS0A0SI Arabidopsis thaliana Full-length cDNA Co...	60	9e-06
26	dbj|AB008264.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...	58	4e-05
27	ref|NM_103580.3| Arabidopsis thaliana ATP binding / ATPase/ hydr...	54	6e-04
28	gb|AY114673.1| Arabidopsis thaliana 26S proteasome AAA-ATPase su...	54	6e-04
29	gb|AY062709.1| Arabidopsis thaliana similar to 26S proteasome AA...	54	6e-04
30	ref|XM_626993.1| Cryptosporidium parvum Iowa II 26S proteasome r...	54	6e-04
31	gb|AF220199.1|AF220199 Pinus taeda 26S proteasome regulatory sub...	52	0.002
32	gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge...	52	0.002
33	ref|XM_946729.1| Theileria annulata strain Ankara 26S proteasome...	50	0.009
34	emb|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segme...	50	0.009
35	gb|AE010137.1| Pyrococcus furiosus DSM 3638, section 12 of 173 o...	50	0.009
36	gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chr...	48	0.035
37	gb|DQ443392.1| Bombyx mori 26S proteasome regulatory ATPase subu...	48	0.035
38	ref|XM_749228.1| Aspergillus fumigatus Af293 BCS1-like ATPase (A...	48	0.035
39	ref|XM_385772.1| Gibberella zeae PH-1 chromosome 3 hypothetical ...	48	0.035
40	ref|XM_567409.1| Cryptococcus neoformans var. neoformans JEC21 A...	48	0.035
41	emb|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segme...	48	0.035
42	ref|XM_661444.1| Cryptosporidium hominis TU502 26S proteasome re...	48	0.035
43	gb|AF071196.1|AF071196 Gossypium hirsutum 26S protease regulator...	48	0.035
44	gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence	46	0.14
45	emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segme...	46	0.14
46	gb|AY241962.1| Dermacentor variabilis 26S proteasome regulatory ...	46	0.14
47	emb|BX815467.1|CNS0ABDM Arabidopsis thaliana Full-length cDNA Co...	46	0.14
48	ref|XM_712341.1| Candida albicans SC5314 putative 26S proteasome...	44	0.54
49	ref|XM_712252.1| Candida albicans SC5314 putative 26S proteasome...	44	0.54
50	ref|XM_654725.1| Aspergillus nidulans FGSC A4 hypothetical prote...	44	0.54
51	gb|AY814317.1| Schistosoma japonicum SJCHGC06030 protein mRNA, p...	44	0.54
52	ref|NM_119048.2| Arabidopsis thaliana RPT2A; ATPase AT4G29040 (R...	42	2.1
53	ref|XM_507461.1| PREDICTED Oryza sativa (japonica cultivar-group...	42	2.1
54	ref|XM_464561.1| Oryza sativa (japonica cultivar-group), mRNA	42	2.1
55	ref|XM_506757.2| PREDICTED Oryza sativa (japonica cultivar-group...	42	2.1
56	gb|AC159413.1| Trypanosoma brucei chromosome 7 clone RPCI93-22O1...	42	2.1
57	gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence	42	2.1
58	gb|AC159433.1| Trypanosoma brucei chromosome 7 clone RPCI93-28I8...	42	2.1
59	gb|AY458647.1| Uncultured bacterium 580 clone EBAC000-36A07 geno...	42	2.1
60	ref|XM_818777.1| Trypanosoma brucei TREU927 clone RPCI93-22O10 p...	42	2.1
61	ref|XM_856540.1| PREDICTED: Canis familiaris similar to two AAA ...	42	2.1
62	ref|XM_845427.1| PREDICTED: Canis familiaris similar to two AAA ...	42	2.1
63	ref|XM_448116.1| Candida glabrata CBS138, CAGL0J09350g partial mRNA	42	2.1
64	ref|XM_448608.1| Candida glabrata CBS138, CAGL0K08910g partial mRNA	42	2.1
65	gb|AC156613.9| Mus musculus chromosome 1, clone RP24-139P17, com...	42	2.1
66	gb|AY034975.1| Arabidopsis thaliana putative 26S proteasome subu...	42	2.1
67	emb|CR380957.1| Candida glabrata strain CBS138 chromosome K comp...	42	2.1
68	emb|CR380956.1| Candida glabrata strain CBS138 chromosome J comp...	42	2.1
69	emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete ...	42	2.1
70	emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, ...	42	2.1
71	emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, B...	42	2.1
72	emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, B...	42	2.1
73	emb|AJ251819.1|FSY251819 Fagus sylvatica mRNA for 26S proteasome...	42	2.1
74	dbj|AB227161.1| Aspergillus oryzae cDNA, contig sequence: AoEST4025	42	2.1
75	gb|AF227503.1| Trypanosoma brucei proteasome regulatory ATPase s...	42	2.1
76	dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003	42	2.1
77	gb|AC003046.4| Homo sapiens Xp22 PACs RPC11-263P4 and RPC11-164K...	42	2.1
78	gb|AC139705.4| Homo sapiens X BAC RP11-102M2 (Roswell Park Cance...	42	2.1
79	gb|AC007915.3|AC007915 Genomic sequence for Arabidopsis thaliana...	42	2.1
80	ref|XM_235326.3| PREDICTED: Rattus norvegicus ATPase family, AAA...	42	2.1
81	dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
82	dbj|AB161192.1| Arabidopsis thaliana HLR mRNA for 26S proteasome...	42	2.1
83	dbj|AK106217.1| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
84	dbj|AK102286.1| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
85	gb|AF123391.1|AF123391 Arabidopsis thaliana 26S proteasome AAA-A...	42	2.1
86	dbj|AK061762.1| Oryza sativa (japonica cultivar-group) cDNA clon...	42	2.1
87	gb|AC079134.24| Mus musculus chromosome 1, clone RP23-395H12, co...	42	2.1
88	emb|AJ409118.1|PLA409118 Phaeoceros laevis mitochondrial partial...	42	2.1
89	dbj|AB052887.1| Oryza sativa mRNA for 26S proteasome ATPase subu...	42	2.1
90	dbj|AB033537.1| Oryza sativa (japonica cultivar-group) OsRPT6 mR...	42	2.1
91	ref|XM_467074.1| Oryza sativa (japonica cultivar-group), mRNA	40	8.4
92	gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipie...	40	8.4
93	gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr...	40	8.4
94	ref|XM_368202.1| Magnaporthe grisea 70-15 chromosome VI hypothet...	40	8.4
95	ref|XM_952955.1| Neurospora crassa OR74A hypothetical protein (N...	40	8.4
96	ref|XM_953767.1| Neurospora crassa OR74A hypothetical protein ( ...	40	8.4
97	ref|XM_327227.1| Neurospora crassa OR74A hypothetical protein (N...	40	8.4
98	ref|XM_327652.1| Neurospora crassa OR74A hypothetical protein ( ...	40	8.4
99	gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118...	40	8.4
100	ref|XM_566529.1| Cryptococcus neoformans var. neoformans JEC21 R...	40	8.4
101	emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome	40	8.4
102	ref|XM_948556.1| Theileria annulata strain Ankara metalloproteas...	40	8.4
103	emb|AL359474.16| Human DNA sequence from clone RP11-747O7 on chr...	40	8.4
104	emb|AL161731.20| Human DNA sequence from clone RP11-489N22 on ch...	40	8.4
105	emb|AL139092.12| Human DNA sequence from clone RP11-420G6 on chr...	40	8.4
106	gb|U00020.1| Mycobacterium leprae cosmid B229	40	8.4
107	gb|AF332134.1| Medicago sativa FtsH protease (FtsH) mRNA, comple...	40	8.4
108	emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encep...	40	8.4
109	emb|AL583918.1|MLEPRTN2 Mycobacterium leprae strain TN complete ...	40	8.4
110	emb|AJ223384.1|MSE223384 Manduca sexta mRNA for 26S proteasome r...	40	8.4
111	gb|AC163889.2| Glomus intraradices clone JGIATSX-5M1, complete s...	40	8.4
112	gb|AC097060.2| Homo sapiens chromosome 1 clone RP11-412H9, compl...	40	8.4
113	ref|NM_058125.3| Drosophila melanogaster Rpt1 CG1341-RA (Rpt1), ...	40	8.4
114	gb|AC099794.2| Homo sapiens chromosome 1 clone RP4-771M4, comple...	40	8.4
115	gb|AY061606.1| Drosophila melanogaster SD07148 full length cDNA	40	8.4
116	gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10...	40	8.4
117	gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosom...	40	8.4
118	gb|AC093046.1| Drosophila melanogaster, chromosome 2R, region 43...	40	8.4
119	gb|AC008259.4|AC008259 Drosophila melanogaster, chromosome 2R, r...	40	8.4
120	dbj|AK037972.1| Mus musculus 16 days neonate thymus cDNA, RIKEN ...	40	8.4
121	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
122	gb|AC104666.3| Homo sapiens BAC clone RP11-771N14 from 2, comple...	40	8.4
123	gb|AF145307.1|AF145307 Drosophila melanogaster 26S proteasome re...	40	8.4
124	gb|AC107815.11| Mus musculus chromosome 7, clone RP23-114A6, com...	40	8.4
125	dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
126	dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
127	dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
128	dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
129	dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic D...	40	8.4
130	ref|NM_210279.1| Eremothecium gossypii AER065Cp (AER065C), mRNA	40	8.4
131	gb|AE003840.3| Drosophila melanogaster chromosome 2R, section 10...	40	8.4
132	gb|AC005447.1|AC005447 Drosophila melanogaster, chromosome 2R, r...	40	8.4
133	gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome	40	8.4
134	emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephal...	40	8.4
135	gb|AF071195.1|AF071195 Gossypium hirsutum 26S protease regulator...	40	8.4
136	gb|U70208.1|LCU70208 La Crosse virus polyprotein gene, complete cds	40	8.4
137	gb|U70207.1|LCU70207 La Crosse virus polyprotein gene, complete cds	40	8.4
138	emb|AL773534.10| Mouse DNA sequence from clone RP23-183O12 on ch...	40	8.4
139	emb|AL833777.11| Mouse DNA sequence from clone RP23-150D10 on ch...	40	8.4
140	gb|L14320.1|HSBBICP4A Bovine herpesvirus type 1 early-intermedia...	40	8.4

---

>dbj|AK066695.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074G13, full
           insert sequence
          Length = 1556

 Score =  389 bits (196), Expect = e-105
 Identities = 419/492 (85%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                       
Query: 127 agggaaaacctaaaaaaggcaaagaaagattatgataaaactgaagatgatttgaagtcc 186
           ||||| ||||| ||||| ||||||||||||| ||  ||||| || ||||| |||||||| 
Sbjct: 217 agggacaacctgaaaaatgcaaagaaagattttgggaaaaccgaggatgacttgaagtca 276

                                                                       
Query: 187 ttgcagagtgtgggccaaatcattggtgaagtacttcggccattggacagtgaaagattt 246
           ||||| ||||| |||||||| ||||||||||||||||| |||||||| |||||| |||| 
Sbjct: 277 ttgcaaagtgtaggccaaataattggtgaagtacttcgaccattggatagtgaacgattc 336

                                                                       
Query: 247 atcgtcaaagccagtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaa 306
           |||||||||||||| |||||||| || ||||| || |||||| |||| ||||||||||||
Sbjct: 337 atcgtcaaagccagcagtgggccccgctatgttgttggctgccgaagtaaagttgacaaa 396

                                                                       
Query: 307 gaaaagctgacagctgcaacacgagttgtccttgacatgacaactttaacaataatgcgc 366
           |||||| |||  |||| |||  | ||||| ||||||||||||||  | || || ||||||
Sbjct: 397 gaaaagttgattgctggaacgagggttgttcttgacatgacaacccttaccatcatgcgc 456

                                                                       
Query: 367 actctaccacgtgaggttgaccccgtggtctataacatgctacacgaagaccccggcaat 426
           || || ||||| |||||||| || ||||| |||||||||||||| |||||||| ||||| 
Sbjct: 457 acactgccacgagaggttgatccagtggtatataacatgctacatgaagaccctggcaac 516

                                                                       
Query: 427 gtcagttactcagctgtaggtggactgtcagatcaaataagggagctgcgggagtccatc 486
           ||||||||||||||||| |||||| |||| |||||||||||||| ||  |||||||||| 
Sbjct: 517 gtcagttactcagctgtgggtggattgtcggatcaaataagggaacttagggagtccatt 576

                                                                       
Query: 487 gagttgcctcttatgaatccagaattgtttctttcgcgttgggattaaaccaccaaaggg 546
           ||  | || || ||||||||| ||||||||| |||| || ||||||||||| ||||||||
Sbjct: 577 gaacttcccctgatgaatccaaaattgtttc-ttcgtgtagggattaaaccgccaaaggg 635

                                                                       
Query: 547 tgttctgctctatggcccacctggaacgggaaagacattgcttgctagagccatcgctag 606
           ||||||||||||||| ||||||||||| || |||||| | ||||||||||| || || ||
Sbjct: 636 tgttctgctctatggtccacctggaactgggaagacactacttgctagagctattgccag 695

                       
Query: 607 caacatcgatgc 618
            ||||| |||||
Sbjct: 696 taacattgatgc 707

---

>dbj|AK063158.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C12, full
           insert sequence
          Length = 1695

 Score =  389 bits (196), Expect = e-105
 Identities = 419/492 (85%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                       
Query: 127 agggaaaacctaaaaaaggcaaagaaagattatgataaaactgaagatgatttgaagtcc 186
           ||||| ||||| ||||| ||||||||||||| ||  ||||| || ||||| |||||||| 
Sbjct: 220 agggacaacctgaaaaatgcaaagaaagattttgggaaaaccgaggatgacttgaagtca 279

                                                                       
Query: 187 ttgcagagtgtgggccaaatcattggtgaagtacttcggccattggacagtgaaagattt 246
           ||||| ||||| |||||||| ||||||||||||||||| |||||||| |||||| |||| 
Sbjct: 280 ttgcaaagtgtaggccaaataattggtgaagtacttcgaccattggatagtgaacgattc 339

                                                                       
Query: 247 atcgtcaaagccagtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaa 306
           |||||||||||||| |||||||| || ||||| || |||||| |||| ||||||||||||
Sbjct: 340 atcgtcaaagccagcagtgggccccgctatgttgttggctgccgaagtaaagttgacaaa 399

                                                                       
Query: 307 gaaaagctgacagctgcaacacgagttgtccttgacatgacaactttaacaataatgcgc 366
           |||||| |||  |||| |||  | ||||| ||||||||||||||  | || || ||||||
Sbjct: 400 gaaaagttgattgctggaacgagggttgttcttgacatgacaacccttaccatcatgcgc 459

                                                                       
Query: 367 actctaccacgtgaggttgaccccgtggtctataacatgctacacgaagaccccggcaat 426
           || || ||||| |||||||| || ||||| |||||||||||||| |||||||| ||||| 
Sbjct: 460 acactgccacgagaggttgatccagtggtatataacatgctacatgaagaccctggcaac 519

                                                                       
Query: 427 gtcagttactcagctgtaggtggactgtcagatcaaataagggagctgcgggagtccatc 486
           ||||||||||||||||| |||||| |||| |||||||||||||| ||  |||||||||| 
Sbjct: 520 gtcagttactcagctgtgggtggattgtcggatcaaataagggaacttagggagtccatt 579

                                                                       
Query: 487 gagttgcctcttatgaatccagaattgtttctttcgcgttgggattaaaccaccaaaggg 546
           ||  | || || ||||||||| ||||||||| |||| || ||||||||||| ||||||||
Sbjct: 580 gaacttcccctgatgaatccaaaattgtttc-ttcgtgtagggattaaaccgccaaaggg 638

                                                                       
Query: 547 tgttctgctctatggcccacctggaacgggaaagacattgcttgctagagccatcgctag 606
           ||||||||||||||| ||||||||||| || |||||| | ||||||||||| || || ||
Sbjct: 639 tgttctgctctatggtccacctggaactgggaagacactacttgctagagctattgccag 698

                       
Query: 607 caacatcgatgc 618
            ||||| |||||
Sbjct: 699 taacattgatgc 710

---

>dbj|AB070254.1| Oryza sativa (japonica cultivar-group) OsRPT4b mRNA for 26S
           proteasome regulatory particle triple-A ATPase
           subunit4b, partial cds
          Length = 1390

 Score =  389 bits (196), Expect = e-105
 Identities = 419/492 (85%), Gaps = 1/492 (0%)
 Strand = Plus / Plus

                                                                       
Query: 127 agggaaaacctaaaaaaggcaaagaaagattatgataaaactgaagatgatttgaagtcc 186
           ||||| ||||| ||||| ||||||||||||| ||  ||||| || ||||| |||||||| 
Sbjct: 41  agggacaacctgaaaaatgcaaagaaagattttgggaaaaccgaggatgacttgaagtca 100

                                                                       
Query: 187 ttgcagagtgtgggccaaatcattggtgaagtacttcggccattggacagtgaaagattt 246
           ||||| ||||| |||||||| ||||||||||||||||| |||||||| |||||| |||| 
Sbjct: 101 ttgcaaagtgtaggccaaataattggtgaagtacttcgaccattggatagtgaacgattc 160

                                                                       
Query: 247 atcgtcaaagccagtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaa 306
           |||||||||||||| |||||||| || ||||| || |||||| |||| ||||||||||||
Sbjct: 161 atcgtcaaagccagcagtgggccccgctatgttgttggctgccgaagtaaagttgacaaa 220

                                                                       
Query: 307 gaaaagctgacagctgcaacacgagttgtccttgacatgacaactttaacaataatgcgc 366
           |||||| |||  |||| |||  | ||||| ||||||||||||||  | || || ||||||
Sbjct: 221 gaaaagttgattgctggaacgagggttgttcttgacatgacaacccttaccatcatgcgc 280

                                                                       
Query: 367 actctaccacgtgaggttgaccccgtggtctataacatgctacacgaagaccccggcaat 426
           || || ||||| |||||||| || ||||| |||||||||||||| |||||||| ||||| 
Sbjct: 281 acactgccacgagaggttgatccagtggtatataacatgctacatgaagaccctggcaac 340

                                                                       
Query: 427 gtcagttactcagctgtaggtggactgtcagatcaaataagggagctgcgggagtccatc 486
           ||||||||||||||||| |||||| |||| |||||||||||||| ||  |||||||||| 
Sbjct: 341 gtcagttactcagctgtgggtggattgtcggatcaaataagggaacttagggagtccatt 400

                                                                       
Query: 487 gagttgcctcttatgaatccagaattgtttctttcgcgttgggattaaaccaccaaaggg 546
           ||  | || || ||||||||| ||||||||| |||| || ||||||||||| ||||||||
Sbjct: 401 gaacttcccctgatgaatccaaaattgtttc-ttcgtgtagggattaaaccgccaaaggg 459

                                                                       
Query: 547 tgttctgctctatggcccacctggaacgggaaagacattgcttgctagagccatcgctag 606
           ||||||||||||||| ||||||||||| || |||||| | ||||||||||| || || ||
Sbjct: 460 tgttctgctctatggtccacctggaactgggaagacactacttgctagagctattgccag 519

                       
Query: 607 caacatcgatgc 618
            ||||| |||||
Sbjct: 520 taacattgatgc 531

---

>gb|AY109445.1| Zea mays CL337_1 mRNA sequence
          Length = 2107

 Score =  184 bits (93), Expect = 2e-43
 Identities = 319/393 (81%), Gaps = 1/393 (0%)
 Strand = Plus / Plus

                                                                       
Query: 166 actgaagatgatttgaagtccttgcagagtgtgggccaaatcattggtgaagtacttcgg 225
           |||||||| || ||||||||  ||||||||||||| ||||| ||||| || || || || 
Sbjct: 598 actgaagacgacttgaagtctctgcagagtgtggggcaaataattggagaggttctccga 657

                                                                       
Query: 226 ccattggacagtgaaagatttatcgtcaaagccagtagtgggccacgttatgtggtcggc 285
           ||  | || | |||| | ||||| || || ||||| ||||| || || ||||||||||| 
Sbjct: 658 cctcttgataatgaacgctttattgtgaaggccagcagtggtccccgatatgtggtcggt 717

                                                                       
Query: 286 tgcagaagcaaagttgacaaagaaaagctgacagctgcaacacgagttgtccttgacatg 345
           ||| |||| ||||| ||||| || ||| ||||| ||| ||| || ||||| |||||||||
Sbjct: 718 tgccgaagtaaagtagacaaggagaagttgacatctggaactcgtgttgtacttgacatg 777

                                                                       
Query: 346 acaactttaacaataatgcgcactctaccacgtgaggttgaccccgtggtctataacatg 405
           || || || ||||||||||||||||| ||||| ||||| || || ||||| |||||||||
Sbjct: 778 acgaccttgacaataatgcgcactcttccacgggaggtggatccagtggtatataacatg 837

                                                                       
Query: 406 ctacacgaagaccccggcaatgtcagttactcagctgtaggtggactgtcagatcaaata 465
           || || ||||| || || |||||||||||||| |||||||| || ||||| ||||| || 
Sbjct: 838 cttcatgaagatccaggaaatgtcagttactctgctgtaggcggtctgtctgatcagatt 897

                                                                       
Query: 466 agggagctgcgggagtccatcgagttgcctcttatgaatccagaattgtttctttcgcgt 525
           ||||||||  |||||||||| ||||| || |||||||| || ||| | |||| |||| ||
Sbjct: 898 agggagctcagggagtccattgagttaccacttatgaaccctgaactctttc-ttcgggt 956

                                            
Query: 526 tgggattaaaccaccaaagggtgttctgctcta 558
            || ||||| || || ||||||||||| |||||
Sbjct: 957 gggaattaagcctcctaagggtgttctactcta 989

---

>gb|BT018476.1| Zea mays clone EL01N0423G12.d mRNA sequence
          Length = 1608

 Score =  165 bits (83), Expect = 2e-37
 Identities = 249/303 (82%), Gaps = 1/303 (0%)
 Strand = Plus / Plus

                                                                       
Query: 256 gccagtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctg 315
           ||||| ||||| || || ||||||||||| ||| |||| ||||| ||||| || ||| ||
Sbjct: 274 gccagcagtggtccccgatatgtggtcggttgccgaagtaaagtagacaaggagaagttg 333

                                                                       
Query: 316 acagctgcaacacgagttgtccttgacatgacaactttaacaataatgcgcactctacca 375
           ||| ||| ||| || ||||| ||||||||||| || || ||||||||||||||||| |||
Sbjct: 334 acatctggaactcgtgttgtacttgacatgacgaccttgacaataatgcgcactcttcca 393

                                                                       
Query: 376 cgtgaggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttac 435
           || ||||| || || ||||| ||||||||||| || ||||| || || ||||||||||||
Sbjct: 394 cgggaggtggatccagtggtatataacatgcttcatgaagatccaggaaatgtcagttac 453

                                                                       
Query: 436 tcagctgtaggtggactgtcagatcaaataagggagctgcgggagtccatcgagttgcct 495
           || |||||||| ||  |||| ||||| || ||||||||  |||||||||| ||||| || 
Sbjct: 454 tctgctgtaggcggtttgtctgatcagattagggagctcagggagtccattgagttacca 513

                                                                       
Query: 496 cttatgaatccagaattgtttctttcgcgttgggattaaaccaccaaagggtgttctgct 555
           |||||||| || ||| | |||| |||| || || ||||| || || ||||||||||| ||
Sbjct: 514 cttatgaaccctgaactctttc-ttcgggtgggaattaagcctcctaagggtgttctact 572

              
Query: 556 cta 558
           |||
Sbjct: 573 cta 575

---

>ref|XM_464508.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1693

 Score =  145 bits (73), Expect = 2e-31
 Identities = 209/253 (82%), Gaps = 1/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 331 gttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgacccc 390
           ||||| ||||||||||||||  | ||||| |||||||| || ||||||||||| ||||| 
Sbjct: 390 gttgttcttgacatgacaacactgacaatcatgcgcacacttccacgtgaggtggaccct 449

                                                                       
Query: 391 gtggtctataacatgctacacgaagaccccggcaatgtcagttactcagctgtaggtgga 450
           ||||| || |||||||| || |||||||| || |||||||||||||| ||||| ||||| 
Sbjct: 450 gtggtttacaacatgcttcatgaagaccctggtaatgtcagttactctgctgttggtggt 509

                                                                       
Query: 451 ctgtcagatcaaataagggagctgcgggagtccatcgagttgcctcttatgaatccagaa 510
           ||||| ||||| || || |||||  ||||||||||||| |||||  | ||||| || || 
Sbjct: 510 ctgtctgatcagattagagagctcagggagtccatcgaattgcccttaatgaaccctgag 569

                                                                       
Query: 511 ttgtttctttcgcgttgggattaaaccaccaaagggtgttctgctctatggcccacctgg 570
            | |||| |||| |||||||| || || || ||||||||||| |||||||| ||||| ||
Sbjct: 570 ctctttc-ttcgtgttgggatcaagccccccaagggtgttctactctatggtccaccagg 628

                        
Query: 571 aacgggaaagaca 583
           ||| || ||||||
Sbjct: 629 aactggtaagaca 641

---

>dbj|AK104698.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C01, full
           insert sequence
          Length = 1326

 Score =  145 bits (73), Expect = 2e-31
 Identities = 209/253 (82%), Gaps = 1/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 331 gttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgacccc 390
           ||||| ||||||||||||||  | ||||| |||||||| || ||||||||||| ||||| 
Sbjct: 23  gttgttcttgacatgacaacactgacaatcatgcgcacacttccacgtgaggtggaccct 82

                                                                       
Query: 391 gtggtctataacatgctacacgaagaccccggcaatgtcagttactcagctgtaggtgga 450
           ||||| || |||||||| || |||||||| || |||||||||||||| ||||| ||||| 
Sbjct: 83  gtggtttacaacatgcttcatgaagaccctggtaatgtcagttactctgctgttggtggt 142

                                                                       
Query: 451 ctgtcagatcaaataagggagctgcgggagtccatcgagttgcctcttatgaatccagaa 510
           ||||| ||||| || || |||||  ||||||||||||| |||||  | ||||| || || 
Sbjct: 143 ctgtctgatcagattagagagctcagggagtccatcgaattgcccttaatgaaccctgag 202

                                                                       
Query: 511 ttgtttctttcgcgttgggattaaaccaccaaagggtgttctgctctatggcccacctgg 570
            | |||| |||| |||||||| || || || ||||||||||| |||||||| ||||| ||
Sbjct: 203 ctctttc-ttcgtgttgggatcaagccccccaagggtgttctactctatggtccaccagg 261

                        
Query: 571 aacgggaaagaca 583
           ||| || ||||||
Sbjct: 262 aactggtaagaca 274

---

>dbj|AK099357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033041G07, full
           insert sequence
          Length = 1692

 Score =  145 bits (73), Expect = 2e-31
 Identities = 209/253 (82%), Gaps = 1/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 331 gttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgacccc 390
           ||||| ||||||||||||||  | ||||| |||||||| || ||||||||||| ||||| 
Sbjct: 389 gttgttcttgacatgacaacactgacaatcatgcgcacacttccacgtgaggtggaccct 448

                                                                       
Query: 391 gtggtctataacatgctacacgaagaccccggcaatgtcagttactcagctgtaggtgga 450
           ||||| || |||||||| || |||||||| || |||||||||||||| ||||| ||||| 
Sbjct: 449 gtggtttacaacatgcttcatgaagaccctggtaatgtcagttactctgctgttggtggt 508

                                                                       
Query: 451 ctgtcagatcaaataagggagctgcgggagtccatcgagttgcctcttatgaatccagaa 510
           ||||| ||||| || || |||||  ||||||||||||| |||||  | ||||| || || 
Sbjct: 509 ctgtctgatcagattagagagctcagggagtccatcgaattgcccttaatgaaccctgag 568

                                                                       
Query: 511 ttgtttctttcgcgttgggattaaaccaccaaagggtgttctgctctatggcccacctgg 570
            | |||| |||| |||||||| || || || ||||||||||| |||||||| ||||| ||
Sbjct: 569 ctctttc-ttcgtgttgggatcaagccccccaagggtgttctactctatggtccaccagg 627

                        
Query: 571 aacgggaaagaca 583
           ||| || ||||||
Sbjct: 628 aactggtaagaca 640

---

>dbj|AK067026.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091H06, full
           insert sequence
          Length = 1718

 Score =  145 bits (73), Expect = 2e-31
 Identities = 209/253 (82%), Gaps = 1/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 331 gttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgacccc 390
           ||||| ||||||||||||||  | ||||| |||||||| || ||||||||||| ||||| 
Sbjct: 391 gttgttcttgacatgacaacactgacaatcatgcgcacacttccacgtgaggtggaccct 450

                                                                       
Query: 391 gtggtctataacatgctacacgaagaccccggcaatgtcagttactcagctgtaggtgga 450
           ||||| || |||||||| || |||||||| || |||||||||||||| ||||| ||||| 
Sbjct: 451 gtggtttacaacatgcttcatgaagaccctggtaatgtcagttactctgctgttggtggt 510

                                                                       
Query: 451 ctgtcagatcaaataagggagctgcgggagtccatcgagttgcctcttatgaatccagaa 510
           ||||| ||||| || || |||||  ||||||||||||| |||||  | ||||| || || 
Sbjct: 511 ctgtctgatcagattagagagctcagggagtccatcgaattgcccttaatgaaccctgag 570

                                                                       
Query: 511 ttgtttctttcgcgttgggattaaaccaccaaagggtgttctgctctatggcccacctgg 570
            | |||| |||| |||||||| || || || ||||||||||| |||||||| ||||| ||
Sbjct: 571 ctctttc-ttcgtgttgggatcaagccccccaagggtgttctactctatggtccaccagg 629

                        
Query: 571 aacgggaaagaca 583
           ||| || ||||||
Sbjct: 630 aactggtaagaca 642

---

>dbj|AB033536.1| Oryza sativa (japonica cultivar-group) OsRPT4 mRNA for 26S
           proteasome regulatory particle triple-A ATPase subunit4,
           complete cds
          Length = 1637

 Score =  145 bits (73), Expect = 2e-31
 Identities = 209/253 (82%), Gaps = 1/253 (0%)
 Strand = Plus / Plus

                                                                       
Query: 331 gttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgacccc 390
           ||||| ||||||||||||||  | ||||| |||||||| || ||||||||||| ||||| 
Sbjct: 390 gttgttcttgacatgacaacactgacaatcatgcgcacacttccacgtgaggtggaccct 449

                                                                       
Query: 391 gtggtctataacatgctacacgaagaccccggcaatgtcagttactcagctgtaggtgga 450
           ||||| || |||||||| || |||||||| || |||||||||||||| ||||| ||||| 
Sbjct: 450 gtggtttacaacatgcttcatgaagaccctggtaatgtcagttactctgctgttggtggt 509

                                                                       
Query: 451 ctgtcagatcaaataagggagctgcgggagtccatcgagttgcctcttatgaatccagaa 510
           ||||| ||||| || || |||||  ||||||||||||| |||||  | ||||| || || 
Sbjct: 510 ctgtctgatcagattagagagctcagggagtccatcgaattgcccttaatgaaccctgag 569

                                                                       
Query: 511 ttgtttctttcgcgttgggattaaaccaccaaagggtgttctgctctatggcccacctgg 570
            | |||| |||| |||||||| || || || ||||||||||| |||||||| ||||| ||
Sbjct: 570 ctctttc-ttcgtgttgggatcaagccccccaagggtgttctactctatggtccaccagg 628

                        
Query: 571 aacgggaaagaca 583
           ||| || ||||||
Sbjct: 629 aactggtaagaca 641

---

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  139 bits (70), Expect = 1e-29
 Identities = 143/166 (86%), Gaps = 1/166 (0%)
 Strand = Plus / Plus

                                                                            
Query: 380      aggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactcag 439
                ||||||| || ||||| |||||||||||||| |||||||| ||||| |||||||||||||
Sbjct: 23800416 aggttgatccagtggtatataacatgctacatgaagaccctggcaacgtcagttactcag 23800475

                                                                            
Query: 440      ctgtaggtggactgtcagatcaaataagggagctgcgggagtccatcgagttgcctctta 499
                |||| |||||| |||| |||||||||||||| ||  |||||||||| ||  | || || |
Sbjct: 23800476 ctgtgggtggattgtcggatcaaataagggaacttagggagtccattgaacttcccctga 23800535

                                                              
Query: 500      tgaatccagaattgtttctttcgcgttgggattaaaccaccaaagg 545
                |||||||| ||||||||| |||| || ||||||||||| |||||||
Sbjct: 23800536 tgaatccaaaattgtttc-ttcgtgtagggattaaaccgccaaagg 23800580



 Score =  107 bits (54), Expect = 4e-20
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                            
Query: 127      agggaaaacctaaaaaaggcaaagaaagattatgataaaactgaagatgatttgaagtcc 186
                ||||| ||||| ||||| ||||||||||||| ||  ||||| || ||||| |||||||| 
Sbjct: 23799840 agggacaacctgaaaaatgcaaagaaagattttgggaaaaccgaggatgacttgaagtca 23799899

                                                                      
Query: 187      ttgcagagtgtgggccaaatcattggtgaagtacttcggccattggacagtgaa 240
                ||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||
Sbjct: 23799900 ttgcaaagtgtaggccaaataattggtgaagtacttcgaccattggatagtgaa 23799953



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 114/137 (83%)
 Strand = Plus / Plus

                                                                            
Query: 247      atcgtcaaagccagtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaa 306
                |||||||||||||| |||||||| || ||||| || |||||| |||| ||||||||||||
Sbjct: 23800183 atcgtcaaagccagcagtgggccccgctatgttgttggctgccgaagtaaagttgacaaa 23800242

                                                                            
Query: 307      gaaaagctgacagctgcaacacgagttgtccttgacatgacaactttaacaataatgcgc 366
                |||||| |||  |||| |||  | ||||| ||||||||||||||  | || || ||||||
Sbjct: 23800243 gaaaagttgattgctggaacgagggttgttcttgacatgacaacccttaccatcatgcgc 23800302

                                 
Query: 367      actctaccacgtgaggt 383
                || || ||||| |||||
Sbjct: 23800303 acactgccacgagaggt 23800319



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                            
Query: 542      aagggtgttctgctctatggcccacctggaacgggaaagacattgcttgctagagccatc 601
                |||||||||||||||||||| ||||||||||| || |||||| | ||||||||||| || 
Sbjct: 23800704 aagggtgttctgctctatggtccacctggaactgggaagacactacttgctagagctatt 23800763

                                 
Query: 602      gctagcaacatcgatgc 618
                || || ||||| |||||
Sbjct: 23800764 gccagtaacattgatgc 23800780



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 553      gctctatggcccacctggaa 572
                ||||||||||||||||||||
Sbjct: 24210052 gctctatggcccacctggaa 24210071

---

>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0029C06
          Length = 156500

 Score =  139 bits (70), Expect = 1e-29
 Identities = 143/166 (86%), Gaps = 1/166 (0%)
 Strand = Plus / Plus

                                                                          
Query: 380    aggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactcag 439
              ||||||| || ||||| |||||||||||||| |||||||| ||||| |||||||||||||
Sbjct: 148492 aggttgatccagtggtatataacatgctacatgaagaccctggcaacgtcagttactcag 148551

                                                                          
Query: 440    ctgtaggtggactgtcagatcaaataagggagctgcgggagtccatcgagttgcctctta 499
              |||| |||||| |||| |||||||||||||| ||  |||||||||| ||  | || || |
Sbjct: 148552 ctgtgggtggattgtcggatcaaataagggaacttagggagtccattgaacttcccctga 148611

                                                            
Query: 500    tgaatccagaattgtttctttcgcgttgggattaaaccaccaaagg 545
              |||||||| ||||||||| |||| || ||||||||||| |||||||
Sbjct: 148612 tgaatccaaaattgtttc-ttcgtgtagggattaaaccgccaaagg 148656



 Score =  107 bits (54), Expect = 4e-20
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                          
Query: 127    agggaaaacctaaaaaaggcaaagaaagattatgataaaactgaagatgatttgaagtcc 186
              ||||| ||||| ||||| ||||||||||||| ||  ||||| || ||||| |||||||| 
Sbjct: 147916 agggacaacctgaaaaatgcaaagaaagattttgggaaaaccgaggatgacttgaagtca 147975

                                                                    
Query: 187    ttgcagagtgtgggccaaatcattggtgaagtacttcggccattggacagtgaa 240
              ||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||
Sbjct: 147976 ttgcaaagtgtaggccaaataattggtgaagtacttcgaccattggatagtgaa 148029



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 114/137 (83%)
 Strand = Plus / Plus

                                                                          
Query: 247    atcgtcaaagccagtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaa 306
              |||||||||||||| |||||||| || ||||| || |||||| |||| ||||||||||||
Sbjct: 148259 atcgtcaaagccagcagtgggccccgctatgttgttggctgccgaagtaaagttgacaaa 148318

                                                                          
Query: 307    gaaaagctgacagctgcaacacgagttgtccttgacatgacaactttaacaataatgcgc 366
              |||||| |||  |||| |||  | ||||| ||||||||||||||  | || || ||||||
Sbjct: 148319 gaaaagttgattgctggaacgagggttgttcttgacatgacaacccttaccatcatgcgc 148378

                               
Query: 367    actctaccacgtgaggt 383
              || || ||||| |||||
Sbjct: 148379 acactgccacgagaggt 148395



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                          
Query: 542    aagggtgttctgctctatggcccacctggaacgggaaagacattgcttgctagagccatc 601
              |||||||||||||||||||| ||||||||||| || |||||| | ||||||||||| || 
Sbjct: 148780 aagggtgttctgctctatggtccacctggaactgggaagacactacttgctagagctatt 148839

                               
Query: 602    gctagcaacatcgatgc 618
              || || ||||| |||||
Sbjct: 148840 gccagtaacattgatgc 148856

---

>dbj|AP004279.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0556B08
          Length = 136775

 Score =  139 bits (70), Expect = 1e-29
 Identities = 143/166 (86%), Gaps = 1/166 (0%)
 Strand = Plus / Plus

                                                                         
Query: 380   aggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactcag 439
             ||||||| || ||||| |||||||||||||| |||||||| ||||| |||||||||||||
Sbjct: 40081 aggttgatccagtggtatataacatgctacatgaagaccctggcaacgtcagttactcag 40140

                                                                         
Query: 440   ctgtaggtggactgtcagatcaaataagggagctgcgggagtccatcgagttgcctctta 499
             |||| |||||| |||| |||||||||||||| ||  |||||||||| ||  | || || |
Sbjct: 40141 ctgtgggtggattgtcggatcaaataagggaacttagggagtccattgaacttcccctga 40200

                                                           
Query: 500   tgaatccagaattgtttctttcgcgttgggattaaaccaccaaagg 545
             |||||||| ||||||||| |||| || ||||||||||| |||||||
Sbjct: 40201 tgaatccaaaattgtttc-ttcgtgtagggattaaaccgccaaagg 40245



 Score =  107 bits (54), Expect = 4e-20
 Identities = 99/114 (86%)
 Strand = Plus / Plus

                                                                         
Query: 127   agggaaaacctaaaaaaggcaaagaaagattatgataaaactgaagatgatttgaagtcc 186
             ||||| ||||| ||||| ||||||||||||| ||  ||||| || ||||| |||||||| 
Sbjct: 39505 agggacaacctgaaaaatgcaaagaaagattttgggaaaaccgaggatgacttgaagtca 39564

                                                                   
Query: 187   ttgcagagtgtgggccaaatcattggtgaagtacttcggccattggacagtgaa 240
             ||||| ||||| |||||||| ||||||||||||||||| |||||||| ||||||
Sbjct: 39565 ttgcaaagtgtaggccaaataattggtgaagtacttcgaccattggatagtgaa 39618



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 114/137 (83%)
 Strand = Plus / Plus

                                                                         
Query: 247   atcgtcaaagccagtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaa 306
             |||||||||||||| |||||||| || ||||| || |||||| |||| ||||||||||||
Sbjct: 39848 atcgtcaaagccagcagtgggccccgctatgttgttggctgccgaagtaaagttgacaaa 39907

                                                                         
Query: 307   gaaaagctgacagctgcaacacgagttgtccttgacatgacaactttaacaataatgcgc 366
             |||||| |||  |||| |||  | ||||| ||||||||||||||  | || || ||||||
Sbjct: 39908 gaaaagttgattgctggaacgagggttgttcttgacatgacaacccttaccatcatgcgc 39967

                              
Query: 367   actctaccacgtgaggt 383
             || || ||||| |||||
Sbjct: 39968 acactgccacgagaggt 39984



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                         
Query: 542   aagggtgttctgctctatggcccacctggaacgggaaagacattgcttgctagagccatc 601
             |||||||||||||||||||| ||||||||||| || |||||| | ||||||||||| || 
Sbjct: 40369 aagggtgttctgctctatggtccacctggaactgggaagacactacttgctagagctatt 40428

                              
Query: 602   gctagcaacatcgatgc 618
             || || ||||| |||||
Sbjct: 40429 gccagtaacattgatgc 40445

---

>gb|DQ191627.1| Solanum tuberosum 26S proteasome AAA-ATPase subunit RPT4a-like
           protein mRNA, complete cds
          Length = 1567

 Score =  129 bits (65), Expect = 1e-26
 Identities = 276/345 (80%), Gaps = 1/345 (0%)
 Strand = Plus / Plus

                                                                       
Query: 274 tatgtggtcggctgcagaagcaaagttgacaaagaaaagctgacagctgcaacacgagtt 333
           |||||||| |||||  | || ||||||||||| ||||| |||||  | |  |||||||| 
Sbjct: 319 tatgtggttggctgtcgcagtaaagttgacaaggaaaaactgacttcaggcacacgagtg 378

                                                                       
Query: 334 gtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgaccccgtg 393
           || || || ||||||||  | ||||| |||||  | || || ||||| ||||| || || 
Sbjct: 379 gttctcgatatgacaacacttacaatcatgcgggcactcccccgtgaagttgatcctgtt 438

                                                                       
Query: 394 gtctataacatgctacacgaagaccccggcaatgtcagttactcagctgtaggtggactg 453
           || || |||||||| || ||||| || |||||  |||||||||| || || |||||||||
Sbjct: 439 gtatacaacatgcttcatgaagatcctggcaacatcagttactctgccgtgggtggactg 498

                                                                       
Query: 454 tcagatcaaataagggagctgcgggagtccatcgagttgcctcttatgaatccagaattg 513
           |||||||| || ||||||||| | || ||||| ||||| ||||| ||||| || ||  | 
Sbjct: 499 tcagatcagatcagggagctgagagaatccattgagttacctctaatgaaccctgagct- 557

                                                                       
Query: 514 tttctttcgcgttgggattaaaccaccaaagggtgttctgctctatggcccacctggaac 573
           |||| | || ||||||||||| || |||||||||||||| ||||| || |||||||||||
Sbjct: 558 tttcctccgggttgggattaagcctccaaagggtgttcttctctacgggccacctggaac 617

                                                        
Query: 574 gggaaagacattgcttgctagagccatcgctagcaacatcgatgc 618
            || ||||||||| | || || || |||||||||||||| |||||
Sbjct: 618 aggcaagacattgttagccagggcaatcgctagcaacatagatgc 662



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 157 tatgataaaactgaagatgatttgaagtccttgcagagtgtgggccaaatcattggtgaa 216
           |||| |||||| |||||||||||||||||  | |||||||| || || ||||| || |||
Sbjct: 202 tatgctaaaacagaagatgatttgaagtcacttcagagtgttggacagatcataggagaa 261

             
Query: 217 gt 218
           ||
Sbjct: 262 gt 263

---

>dbj|AB061249.1| Solanum tuberosum StRPT4a mRNA for 26S proteasome AAA-ATPase
           subunit RPT4a, complete cds
          Length = 1484

 Score =  129 bits (65), Expect = 1e-26
 Identities = 276/345 (80%), Gaps = 1/345 (0%)
 Strand = Plus / Plus

                                                                       
Query: 274 tatgtggtcggctgcagaagcaaagttgacaaagaaaagctgacagctgcaacacgagtt 333
           |||||||| |||||  | || ||||||||||| ||||| |||||  | |  |||||||| 
Sbjct: 307 tatgtggttggctgtcgcagtaaagttgacaaggaaaaactgacttcaggcacacgagtg 366

                                                                       
Query: 334 gtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgaccccgtg 393
           || || || ||||||||  | ||||| |||||  | || || ||||| ||||| || || 
Sbjct: 367 gttctcgatatgacaacacttacaatcatgcgggcactcccccgtgaagttgatcctgtt 426

                                                                       
Query: 394 gtctataacatgctacacgaagaccccggcaatgtcagttactcagctgtaggtggactg 453
           || || |||||||| || ||||| || |||||  |||||||||| || || |||||||||
Sbjct: 427 gtatacaacatgcttcatgaagatcctggcaacatcagttactctgccgtgggtggactg 486

                                                                       
Query: 454 tcagatcaaataagggagctgcgggagtccatcgagttgcctcttatgaatccagaattg 513
           |||||||| || ||||||||| | || ||||| ||||| ||||| ||||| || ||  | 
Sbjct: 487 tcagatcagatcagggagctgagagaatccattgagttacctctaatgaaccctgagct- 545

                                                                       
Query: 514 tttctttcgcgttgggattaaaccaccaaagggtgttctgctctatggcccacctggaac 573
           |||| | || ||||||||||| || |||||||||||||| ||||| || |||||||||||
Sbjct: 546 tttcctccgggttgggattaagcctccaaagggtgttcttctctacgggccacctggaac 605

                                                        
Query: 574 gggaaagacattgcttgctagagccatcgctagcaacatcgatgc 618
            || ||||||||| | || || || |||||||||||||| |||||
Sbjct: 606 aggcaagacattgttagccagggcaatcgctagcaacatagatgc 650



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 157 tatgataaaactgaagatgatttgaagtccttgcagagtgtgggccaaatcattggtgaa 216
           |||| |||||| |||||||||||||||||  | |||||||| || || ||||| || |||
Sbjct: 190 tatgctaaaacagaagatgatttgaagtcacttcagagtgttggacagatcataggagaa 249

             
Query: 217 gt 218
           ||
Sbjct: 250 gt 251

---

>dbj|AB120534.1| Nicotiana tabacum mRNA, transcriptionally up-regulated region
            associated with genomic hypomethylation, clone: O17
          Length = 1085

 Score =  109 bits (55), Expect = 1e-20
 Identities = 227/283 (80%), Gaps = 1/283 (0%)
 Strand = Plus / Minus

                                                                        
Query: 324  aacacgagttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggt 383
            |||| |||| || ||||||||||||||| | ||||| |||||  | || || ||||||||
Sbjct: 1069 aacaagagtggttcttgacatgacaactctcacaatcatgcgtgccctcccgcgtgaggt 1010

                                                                        
Query: 384  tgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactcagctgt 443
            ||| || || || ||||||||||| || ||||| || || ||| | |||||||| |||||
Sbjct: 1009 tgatccagttgtttataacatgctccatgaagatccgggaaatattagttactctgctgt 950

                                                                        
Query: 444  aggtggactgtcagatcaaataagggagctgcgggagtccatcgagttgcctcttatgaa 503
            ||||||  |||||||||||||  | || ||  |||| ||||| ||| | |||||||||||
Sbjct: 949  aggtggtttgtcagatcaaattcgtgaacttagggaatccattgagctacctcttatgaa 890

                                                                        
Query: 504  tccagaattgtttctttcgcgttgggattaaaccaccaaagggtgttctgctctatggcc 563
            ||| ||  || ||| |  | ||||| || ||||| || ||||||||||||||||| ||||
Sbjct: 889  tcctgagctg-ttcctcagagttggaatcaaacctcccaagggtgttctgctctacggcc 831

                                                       
Query: 564  cacctggaacgggaaagacattgcttgctagagccatcgctag 606
            | ||||| || || ||||| ||| | ||||||||||| |||||
Sbjct: 830  cccctggtactggcaagactttgttagctagagccattgctag 788

---

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                           
Query: 380     aggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactcag 439
               |||| ||||| ||||| || |||||||| || |||||||| || |||||||||||||| |
Sbjct: 5597958 aggtggaccctgtggtttacaacatgcttcatgaagaccctggtaatgtcagttactctg 5597899

                                                                      
Query: 440     ctgtaggtggactgtcagatcaaataagggagctgcgggagtccatcgagttgcc 494
               |||| ||||| ||||| ||||| || || |||||  ||||||||||||| |||||
Sbjct: 5597898 ctgttggtggtctgtctgatcagattagagagctcagggagtccatcgaattgcc 5597844



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                    
Query: 331     gttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggt 383
               ||||| ||||||||||||||  | ||||| |||||||| || |||||||||||
Sbjct: 5598139 gttgttcttgacatgacaacactgacaatcatgcgcacacttccacgtgaggt 5598087



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 138      aaaaaaggcaaagaaagatta 158
                |||||||||||||||||||||
Sbjct: 24517716 aaaaaaggcaaagaaagatta 24517736



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 38       cggccgccgcccgccggcgc 57
                ||||||||||||||||||||
Sbjct: 26264606 cggccgccgcccgccggcgc 26264587



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 553      gctctatggcccacctggaa 572
                ||||||||||||||||||||
Sbjct: 12378291 gctctatggcccacctggaa 12378272

---

>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0026H03
          Length = 151827

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                          
Query: 380    aggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactcag 439
              |||| ||||| ||||| || |||||||| || |||||||| || |||||||||||||| |
Sbjct: 142693 aggtggaccctgtggtttacaacatgcttcatgaagaccctggtaatgtcagttactctg 142634

                                                                     
Query: 440    ctgtaggtggactgtcagatcaaataagggagctgcgggagtccatcgagttgcc 494
              |||| ||||| ||||| ||||| || || |||||  ||||||||||||| |||||
Sbjct: 142633 ctgttggtggtctgtctgatcagattagagagctcagggagtccatcgaattgcc 142579



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                   
Query: 331    gttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggt 383
              ||||| ||||||||||||||  | ||||| |||||||| || |||||||||||
Sbjct: 142874 gttgttcttgacatgacaacactgacaatcatgcgcacacttccacgtgaggt 142822

---

>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0419A09
          Length = 168064

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 97/115 (84%)
 Strand = Plus / Minus

                                                                         
Query: 380   aggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactcag 439
             |||| ||||| ||||| || |||||||| || |||||||| || |||||||||||||| |
Sbjct: 25694 aggtggaccctgtggtttacaacatgcttcatgaagaccctggtaatgtcagttactctg 25635

                                                                    
Query: 440   ctgtaggtggactgtcagatcaaataagggagctgcgggagtccatcgagttgcc 494
             |||| ||||| ||||| ||||| || || |||||  ||||||||||||| |||||
Sbjct: 25634 ctgttggtggtctgtctgatcagattagagagctcagggagtccatcgaattgcc 25580



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                  
Query: 331   gttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggt 383
             ||||| ||||||||||||||  | ||||| |||||||| || |||||||||||
Sbjct: 25875 gttgttcttgacatgacaacactgacaatcatgcgcacacttccacgtgaggt 25823

---

>gb|AF220406.1|AF220406 Vitis riparia 26S proteasome regulatory ATPase subunit S10b
           (Rev136-3) mRNA, complete cds
          Length = 680

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 223/283 (78%), Gaps = 1/283 (0%)
 Strand = Plus / Plus

                                                                       
Query: 337 cttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgaccccgtggtc 396
           ||||| ||||| ||| | ||||| |||||  |||| ||||| || ||||| || || || 
Sbjct: 51  cttgatatgactactctcacaattatgcgggctcttccacgagaagttgatccagttgta 110

                                                                       
Query: 397 tataacatgctacacgaagaccccggcaatgtcagttactcagctgtaggtggactgtca 456
           ||||||||||| || |||||||| || ||||| || ||| |||| || || || ||||||
Sbjct: 111 tataacatgcttcatgaagacccaggtaatgttagctacgcagcggtgggaggtctgtca 170

                                                                       
Query: 457 gatcaaataagggagctgcgggagtccatcgagttgcctcttatgaatccagaattgttt 516
           ||||| ||  | || || ||||| ||||| || |||||||| |||||||| ||  | |||
Sbjct: 171 gatcagattcgagaactccgggaatccattgaattgcctctaatgaatcctgagctcttt 230

                                                                       
Query: 517 ctttcgcgttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacggg 576
             || | || |||||||| || || ||||||||||| |||||||| || |||||||| ||
Sbjct: 231 -attagggtggggattaagcctcccaagggtgttcttctctatggacctcctggaacagg 289

                                                      
Query: 577 aaagacattgcttgctagagccatcgctagcaacatcgatgct 619
            |||||| || | || ||||| || || |||||||| ||||||
Sbjct: 290 caagacactgttagccagagcaattgcgagcaacatagatgct 332

---

>ref|NM_123667.2| Arabidopsis thaliana RPT4A; ATPase AT5G43010 (RPT4A) mRNA, complete
           cds
          Length = 1505

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 173/218 (79%)
 Strand = Plus / Plus

                                                                       
Query: 208 attggtgaagtacttcggccattggacagtgaaagatttatcgtcaaagccagtagtggg 267
           ||||| ||||| ||||| ||  |||| | ||||||||| || || ||||| || ||||| 
Sbjct: 307 attggagaagtgcttcgacccctggataatgaaagattgattgtgaaagcgagcagtggt 366

                                                                       
Query: 268 ccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctgacagctgcaaca 327
           |||||||||||||| || ||| |||||||||| || || |||||||| ||  | | ||| 
Sbjct: 367 ccacgttatgtggtgggttgccgaagcaaagtggataaggaaaagctaacctccggaact 426

                                                                       
Query: 328 cgagttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgac 387
           |||||||| || || ||||||||  ||||||| |||||  | || || || || ||||| 
Sbjct: 427 cgagttgttctcgatatgacaacactaacaattatgcgagcccttccccgagaagttgat 486

                                                 
Query: 388 cccgtggtctataacatgctacacgaagaccccggcaa 425
           || || || ||||||||||| || |||||||| |||||
Sbjct: 487 cctgttgtttataacatgcttcatgaagaccctggcaa 524

---

>gb|AY078040.1| Arabidopsis thaliana AT5g43010/MBD2_21 mRNA, complete cds
          Length = 1200

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 173/218 (79%)
 Strand = Plus / Plus

                                                                       
Query: 208 attggtgaagtacttcggccattggacagtgaaagatttatcgtcaaagccagtagtggg 267
           ||||| ||||| ||||| ||  |||| | ||||||||| || || ||||| || ||||| 
Sbjct: 187 attggagaagtgcttcgacccctggataatgaaagattgattgtgaaagcgagcagtggt 246

                                                                       
Query: 268 ccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctgacagctgcaaca 327
           |||||||||||||| || ||| |||||||||| || || |||||||| ||  | | ||| 
Sbjct: 247 ccacgttatgtggtgggttgccgaagcaaagtggataaggaaaagctaacctccggaact 306

                                                                       
Query: 328 cgagttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgac 387
           |||||||| || || ||||||||  ||||||| |||||  | || || || || ||||| 
Sbjct: 307 cgagttgttctcgatatgacaacactaacaattatgcgagcccttccccgagaagttgat 366

                                                 
Query: 388 cccgtggtctataacatgctacacgaagaccccggcaa 425
           || || || ||||||||||| || |||||||| |||||
Sbjct: 367 cctgttgtttataacatgcttcatgaagaccctggcaa 404

---

>gb|AF372945.1|AF372945 Arabidopsis thaliana AT5g43010/MBD2_21 mRNA, complete cds
          Length = 1508

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 173/218 (79%)
 Strand = Plus / Plus

                                                                       
Query: 208 attggtgaagtacttcggccattggacagtgaaagatttatcgtcaaagccagtagtggg 267
           ||||| ||||| ||||| ||  |||| | ||||||||| || || ||||| || ||||| 
Sbjct: 307 attggagaagtgcttcgacccctggataatgaaagattgattgtgaaagcgagcagtggt 366

                                                                       
Query: 268 ccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctgacagctgcaaca 327
           |||||||||||||| || ||| |||||||||| || || |||||||| ||  | | ||| 
Sbjct: 367 ccacgttatgtggtgggttgccgaagcaaagtggataaggaaaagctaacctccggaact 426

                                                                       
Query: 328 cgagttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgac 387
           |||||||| || || ||||||||  ||||||| |||||  | || || || || ||||| 
Sbjct: 427 cgagttgttctcgatatgacaacactaacaattatgcgagcccttccccgagaagttgat 486

                                                 
Query: 388 cccgtggtctataacatgctacacgaagaccccggcaa 425
           || || || ||||||||||| || |||||||| |||||
Sbjct: 487 cctgttgtttataacatgcttcatgaagaccctggcaa 524

---

>gb|AF123393.1|AF123393 Arabidopsis thaliana 26S proteasome AAA-ATPase subunit RPT4a
           (RPT4a) mRNA, complete cds
          Length = 1360

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 173/218 (79%)
 Strand = Plus / Plus

                                                                       
Query: 208 attggtgaagtacttcggccattggacagtgaaagatttatcgtcaaagccagtagtggg 267
           ||||| ||||| ||||| ||  |||| | ||||||||| || || ||||| || ||||| 
Sbjct: 195 attggagaagtgcttcgacccctggataatgaaagattgattgtgaaagcgagcagtggt 254

                                                                       
Query: 268 ccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctgacagctgcaaca 327
           |||||||||||||| || ||| |||||||||| || || |||||||| ||  | | ||| 
Sbjct: 255 ccacgttatgtggtgggttgccgaagcaaagtggataaggaaaagctaacctccggaact 314

                                                                       
Query: 328 cgagttgtccttgacatgacaactttaacaataatgcgcactctaccacgtgaggttgac 387
           |||||||| || || ||||||||  ||||||| |||||  | || || || || ||||| 
Sbjct: 315 cgagttgttctcgatatgacaacactaacaattatgcgagcccttccccgagaagttgat 374

                                                 
Query: 388 cccgtggtctataacatgctacacgaagaccccggcaa 425
           || || || ||||||||||| || |||||||| |||||
Sbjct: 375 cctgttgtttataacatgcttcatgaagaccctggcaa 412

---

>emb|BX830758.1|CNS0A0SI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS20ZE06 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1468

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 126/158 (79%)
 Strand = Plus / Plus

                                                                       
Query: 208 attggtgaagtacttcggccattggacagtgaaagatttatcgtcaaagccagtagtggg 267
           ||||| ||||| ||||| ||  |||| | ||| ||||| || || ||||| || ||||| 
Sbjct: 293 attggagaagtgcttcgacccctggataatgagagattgattgtgaaagcgagcagtggt 352

                                                                       
Query: 268 ccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctgacagctgcaaca 327
           |||||||||||||| || ||| |||||||||| || || |||||||| ||  | | ||| 
Sbjct: 353 ccacgttatgtggtgggttgccgaagcaaagtggataaggaaaagctaacctccggaact 412

                                                 
Query: 328 cgagttgtccttgacatgacaactttaacaataatgcg 365
           |||||||| || || ||||||||  ||||||| |||||
Sbjct: 413 cgagttgttctcgatatgacaacactaacaattatgcg 450

---

>dbj|AB008264.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBD2
          Length = 79976

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 92/113 (81%)
 Strand = Plus / Minus

                                                                         
Query: 253   aaagccagtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaag 312
             ||||| || ||||| |||||||||||||| || ||| |||||||||| || || ||||||
Sbjct: 79285 aaagcgagcagtggtccacgttatgtggtgggttgccgaagcaaagtggataaggaaaag 79226

                                                                  
Query: 313   ctgacagctgcaacacgagttgtccttgacatgacaactttaacaataatgcg 365
             || ||  | | ||| |||||||| || || ||||||||  ||||||| |||||
Sbjct: 79225 ctaacctccggaactcgagttgttctcgatatgacaacactaacaattatgcg 79173

---

>ref|NM_103580.3| Arabidopsis thaliana ATP binding / ATPase/ hydrolase/
           nucleoside-triphosphatase/ nucleotide binding AT1G45000
           mRNA, complete cds
          Length = 1555

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 150/191 (78%)
 Strand = Plus / Plus

                                                                       
Query: 259 agtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctgaca 318
           |||||||| || ||||||||||| || ||  | ||||| || ||||| |||||||| || 
Sbjct: 314 agtagtggccctcgttatgtggtgggttgtcgtagcaaggtggacaaggaaaagcttact 373

                                                                       
Query: 319 gctgcaacacgagttgtccttgacatgacaactttaacaataatgcgcactctaccacgt 378
            ||| ||| ||||||||||| || ||||| ||  | ||||| |||||  | || || |||
Sbjct: 374 tctggaactcgagttgtcctggatatgactacgctgacaattatgcgagcccttcctcgt 433

                                                                       
Query: 379 gaggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactca 438
           || ||||| || || || ||||||||| | || ||||| || |||||  | |||||||||
Sbjct: 434 gaagttgatcctgttgtttataacatgttgcatgaagatccaggcaacattagttactca 493

                      
Query: 439 gctgtaggtgg 449
           ||||| |||||
Sbjct: 494 gctgtgggtgg 504

---

>gb|AY114673.1| Arabidopsis thaliana 26S proteasome AAA-ATPase subunit RPT4a-like
           protein (At1g45000) mRNA, complete cds
          Length = 1254

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 150/191 (78%)
 Strand = Plus / Plus

                                                                       
Query: 259 agtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctgaca 318
           |||||||| || ||||||||||| || ||  | ||||| || ||||| |||||||| || 
Sbjct: 238 agtagtggccctcgttatgtggtgggttgtcgtagcaaggtggacaaggaaaagcttact 297

                                                                       
Query: 319 gctgcaacacgagttgtccttgacatgacaactttaacaataatgcgcactctaccacgt 378
            ||| ||| ||||||||||| || ||||| ||  | ||||| |||||  | || || |||
Sbjct: 298 tctggaactcgagttgtcctggatatgactacgctgacaattatgcgagcccttcctcgt 357

                                                                       
Query: 379 gaggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactca 438
           || ||||| || || || ||||||||| | || ||||| || |||||  | |||||||||
Sbjct: 358 gaagttgatcctgttgtttataacatgttgcatgaagatccaggcaacattagttactca 417

                      
Query: 439 gctgtaggtgg 449
           ||||| |||||
Sbjct: 418 gctgtgggtgg 428

---

>gb|AY062709.1| Arabidopsis thaliana similar to 26S proteasome AAA-ATPase subunit
           RPT4a (At1g45000; F27F5.8) mRNA, complete cds
          Length = 1465

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 150/191 (78%)
 Strand = Plus / Plus

                                                                       
Query: 259 agtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctgaca 318
           |||||||| || ||||||||||| || ||  | ||||| || ||||| |||||||| || 
Sbjct: 314 agtagtggccctcgttatgtggtgggttgtcgtagcaaggtggacaaggaaaagcttact 373

                                                                       
Query: 319 gctgcaacacgagttgtccttgacatgacaactttaacaataatgcgcactctaccacgt 378
            ||| ||| ||||||||||| || ||||| ||  | ||||| |||||  | || || |||
Sbjct: 374 tctggaactcgagttgtcctggatatgactacgctgacaattatgcgagcccttcctcgt 433

                                                                       
Query: 379 gaggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactca 438
           || ||||| || || || ||||||||| | || ||||| || |||||  | |||||||||
Sbjct: 434 gaagttgatcctgttgtttataacatgttgcatgaagatccaggcaacattagttactca 493

                      
Query: 439 gctgtaggtgg 449
           ||||| |||||
Sbjct: 494 gctgtgggtgg 504

---

>ref|XM_626993.1| Cryptosporidium parvum Iowa II 26S proteasome regulatory subunit
           S10b like AAA+ ATpase (cgd8_840), partial mRNA
          Length = 1221

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                          
Query: 157 tatgataaaactgaagatgatttgaagtccttgcagagtgtgggcca 203
           |||||||| || || |||||||||||| | |||||||||||||||||
Sbjct: 169 tatgataagacagaggatgatttgaaggcattgcagagtgtgggcca 215

---

>gb|AF220199.1|AF220199 Pinus taeda 26S proteasome regulatory subunit 8 mRNA, complete cds
          Length = 1747

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                 
Query: 538 accaaagggtgttctgctctatggcccacctggaacgggaaagacattgcttgc 591
           |||||||||||| ||| | ||||| || ||||| || |||||||||||||||||
Sbjct: 661 accaaagggtgtactgttgtatggaccccctggcactggaaagacattgcttgc 714

---

>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 53/62 (85%)
 Strand = Plus / Minus

                                                                           
Query: 524     gttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagaca 583
               ||||| ||| |||||||||| ||| ||||||| || || ||||| ||||| |||||||||
Sbjct: 1115683 gttggaattgaaccaccaaaaggtattctgctttacggaccaccaggaactggaaagaca 1115624

                 
Query: 584     tt 585
               ||
Sbjct: 1115623 tt 1115622



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    gataaaactgaagatgattt 179
              ||||||||||||||||||||
Sbjct: 389267 gataaaactgaagatgattt 389248

---

>ref|XM_946729.1| Theileria annulata strain Ankara 26S proteasome ATPase subunit
           (TA15700) partial mRNA
          Length = 1182

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                    
Query: 557 tatggcccacctggaacgggaaagacattgcttgctagagc 597
           |||||||||||||| || ||||||||| |||| ||||||||
Sbjct: 526 tatggcccacctggcactggaaagacactgctggctagagc 566

---

>emb|AJ248283.1|CNSPAX01 Pyrococcus abyssi complete genome; segment 1/6
          Length = 307150

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 539    ccaaagggtgttctgctctatggcccacctgga 571
              |||||||| ||||| ||||||||||||||||||
Sbjct: 190777 ccaaagggcgttctcctctatggcccacctgga 190745

---

>gb|AE010137.1| Pyrococcus furiosus DSM 3638, section 12 of 173 of the complete genome
          Length = 11952

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 539   ccaaagggtgttctgctctatggcccacctgga 571
             |||||||| |||||||||||||| |||||||||
Sbjct: 11371 ccaaagggagttctgctctatggaccacctgga 11339

---

>gb|AE017350.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 10, complete
               sequence
          Length = 1085720

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 484     atcgagttgcctcttatgaatccagaattgtt 515
               |||||||||||||| |||||||| ||||||||
Sbjct: 1031616 atcgagttgcctctgatgaatcccgaattgtt 1031647

---

>gb|DQ443392.1| Bombyx mori 26S proteasome regulatory ATPase subunit 10B mRNA,
           complete cds
          Length = 1602

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                   
Query: 324 aacacgagttgtccttgacatgacaactttaacaataatg 363
           ||||||||||| |||||||||||| ||| | |||||||||
Sbjct: 382 aacacgagttgcccttgacatgaccactcttacaataatg 421

---

>ref|XM_749228.1| Aspergillus fumigatus Af293 BCS1-like ATPase (Afu3g13000) partial
           mRNA
          Length = 1500

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 550 tctgctctatggcccacctggaacgggaaaga 581
           |||||||||||| |||||||| ||||||||||
Sbjct: 852 tctgctctatgggccacctggcacgggaaaga 883

---

>ref|XM_385772.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05596.1)
            partial mRNA
          Length = 3420

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 557  tatggcccacctggaacgggaaagacattgct 588
            |||||||| |||||||| ||||||||||||||
Sbjct: 2368 tatggccctcctggaactggaaagacattgct 2399

---

>ref|XM_567409.1| Cryptococcus neoformans var. neoformans JEC21 ATPase (CNJ03290)
           partial mRNA
          Length = 1306

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 484 atcgagttgcctcttatgaatccagaattgtt 515
           |||||||||||||| |||||||| ||||||||
Sbjct: 514 atcgagttgcctctgatgaatcccgaattgtt 545

---

>emb|AJ248287.2|CNSPAX05 Pyrococcus abyssi complete genome; segment 5/6
          Length = 305600

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 45/52 (86%)
 Strand = Plus / Minus

                                                                  
Query: 542    aagggtgttctgctctatggcccacctggaacgggaaagacattgcttgcta 593
              ||||||||||| |||||||| ||||| ||||| || ||||| ||||| ||||
Sbjct: 123534 aagggtgttctcctctatggtccaccgggaaccggtaagaccttgctggcta 123483



 Score = 44.1 bits (22), Expect = 0.54
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 548    gttctgctctatggcccacctggaacgggaaagacattgcttgcta 593
              ||||| |||||||||||||| ||||| || ||||| ||||| ||||
Sbjct: 122523 gttcttctctatggcccaccgggaactggtaagaccttgctagcta 122478

---

>ref|XM_661444.1| Cryptosporidium hominis TU502 26S proteasome regulatory subunit
           (Chro.80103) partial mRNA
          Length = 1176

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 157 tatgataaaactgaagatgatttgaagtccttgcagagtgtggg 200
           |||||||| || || |||||||||||| | ||||||||||||||
Sbjct: 124 tatgataagacagaggatgatttgaaggcattgcagagtgtggg 167

---

>gb|AF071196.1|AF071196 Gossypium hirsutum 26S protease regulatory subunit (PRA2) mRNA,
           partial cds
          Length = 270

 Score = 48.1 bits (24), Expect = 0.035
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 163 aaaactgaagatgatttgaagtccttgcagagtgtgggccaaatcattggtgaagt 218
           ||||| |||||||||||||||||  | |||||||| || || |||||||| |||||
Sbjct: 45  aaaacagaagatgatttgaagtctcttcagagtgttgggcagatcattggggaagt 100

---

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 26      ggccgacgacgtcggccgccgcc 48
               |||||||||||||||||||||||
Sbjct: 2669121 ggccgacgacgtcggccgccgcc 2669143

---

>emb|AJ248284.1|CNSPAX02 Pyrococcus abyssi complete genome; segment 2/6
          Length = 293250

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                            
Query: 542   aagggtgttctgctctatggcccacctggaacgggaaagacattgct 588
             ||||||||||| |||||||| ||||| ||||| || ||||| |||||
Sbjct: 78248 aagggtgttcttctctatggtccaccaggaactggtaagaccttgct 78202

---

>gb|AY241962.1| Dermacentor variabilis 26S proteasome regulatory subunit mRNA,
           complete cds
          Length = 1322

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 41/47 (87%)
 Strand = Plus / Plus

                                                          
Query: 379 gaggttgaccccgtggtctataacatgctacacgaagaccccggcaa 425
           ||||| |||||  |||| |||||||||  ||||||||||||||||||
Sbjct: 391 gaggtggacccattggtgtataacatgtcacacgaagaccccggcaa 437

---

>emb|BX815467.1|CNS0ABDM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS62ZE04 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1297

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 149/191 (78%)
 Strand = Plus / Plus

                                                                       
Query: 259 agtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctgaca 318
           |||||||| || ||||||||||| || ||  | ||||| || ||||| |||||||| || 
Sbjct: 233 agtagtggccctcgttatgtggtgggttgtcgtagcaaggtggacaaggaaaagcttact 292

                                                                       
Query: 319 gctgcaacacgagttgtccttgacatgacaactttaacaataatgcgcactctaccacgt 378
            ||| ||| ||||||||||| || ||||| ||  | ||||| |||||  | || || |||
Sbjct: 293 tctggaactcgagttgtcctggatatgactacgctgacaattatgcgagcccttcctcgt 352

                                                                       
Query: 379 gaggttgaccccgtggtctataacatgctacacgaagaccccggcaatgtcagttactca 438
           || ||||| || || || ||| ||||| | || ||||| || |||||  | |||||||||
Sbjct: 353 gaagttgatcctgttgtttatgacatgttgcatgaagatccaggcaacattagttactca 412

                      
Query: 439 gctgtaggtgg 449
           ||||| |||||
Sbjct: 413 gctgtgggtgg 423

---

>ref|XM_712341.1| Candida albicans SC5314 putative 26S proteasome regulatory particle
           ATPase Rpt4p (CaO19_8112), mRNA
          Length = 1287

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 gattatgataaaactgaagatgatttgaagtccttgcagagtgtgggccaaatcattggt 213
           |||||||| ||||||||| ||||| | ||  | |||||   ||||||||| |||||||||
Sbjct: 232 gattatgagaaaactgaaaatgatataaaagctttgcaatctgtgggccagatcattggt 291

                 
Query: 214 gaagta 219
           ||||||
Sbjct: 292 gaagta 297

---

>ref|XM_712252.1| Candida albicans SC5314 putative 26S proteasome regulatory particle
           ATPase Rpt4p (CaO19_482), mRNA
          Length = 1287

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 55/66 (83%)
 Strand = Plus / Plus

                                                                       
Query: 154 gattatgataaaactgaagatgatttgaagtccttgcagagtgtgggccaaatcattggt 213
           |||||||| ||||||||| ||||| | ||  | |||||   ||||||||| |||||||||
Sbjct: 232 gattatgagaaaactgaaaatgatataaaagctttgcaatctgtgggccagatcattggt 291

                 
Query: 214 gaagta 219
           ||||||
Sbjct: 292 gaagta 297

---

>ref|XM_654725.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN2213.2), mRNA
          Length = 1383

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 530 attaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagacattgctt 589
           |||||||| |||||||||||  | ||||| ||  | |||||||| ||||||||| |||||
Sbjct: 703 attaaaccgccaaagggtgtcatcctctacggagctcctggaactggaaagacactgctt 762

             
Query: 590 gc 591
           ||
Sbjct: 763 gc 764

---

>gb|AY814317.1| Schistosoma japonicum SJCHGC06030 protein mRNA, partial cds
          Length = 1387

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 496 cttatgaatccagaattgtttc 517
           ||||||||||||||||||||||
Sbjct: 476 cttatgaatccagaattgtttc 497

---

>ref|NM_119048.2| Arabidopsis thaliana RPT2A; ATPase AT4G29040 (RPT2A) mRNA, complete
           cds
          Length = 1574

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 525 ttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagacat 584
           |||| ||||||||||||||||||||  |  | |||||    |||||||| || |||||||
Sbjct: 716 ttggtattaaaccaccaaagggtgtaattttgtatggtgagcctggaactgggaagacat 775

                    
Query: 585 tgcttgcta 593
           |||||||||
Sbjct: 776 tgcttgcta 784

---

>ref|XM_507461.1| PREDICTED Oryza sativa (japonica cultivar-group), P0544H11.38 mRNA
          Length = 1653

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 538 accaaagggtgttctgctctatggcccacctggaacgggaaagacattg 586
           |||||||||||| || ||||||||||| || || || ||||| ||||||
Sbjct: 653 accaaagggtgtccttctctatggccctccaggcacaggaaaaacattg 701

---

>ref|XM_464561.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1653

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 538 accaaagggtgttctgctctatggcccacctggaacgggaaagacattg 586
           |||||||||||| || ||||||||||| || || || ||||| ||||||
Sbjct: 653 accaaagggtgtccttctctatggccctccaggcacaggaaaaacattg 701

---

>ref|XM_506757.2| PREDICTED Oryza sativa (japonica cultivar-group), P0544H11.38 mRNA
          Length = 1771

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 538 accaaagggtgttctgctctatggcccacctggaacgggaaagacattg 586
           |||||||||||| || ||||||||||| || || || ||||| ||||||
Sbjct: 753 accaaagggtgtccttctctatggccctccaggcacaggaaaaacattg 801

---

>gb|AC159413.1| Trypanosoma brucei chromosome 7 clone RPCI93-22O10, complete sequence
          Length = 156548

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 525    ttgggattaaaccaccaaagggtgttctgctctatgg 561
              |||| ||||||||||| ||||| || |||||||||||
Sbjct: 108489 ttggtattaaaccaccgaagggcgtgctgctctatgg 108453

---

>gb|CP000070.1| Trypanosoma brucei chromosome 7, complete sequence
          Length = 2205233

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 525    ttgggattaaaccaccaaagggtgttctgctctatgg 561
              |||| ||||||||||| ||||| || |||||||||||
Sbjct: 654030 ttggtattaaaccaccgaagggcgtgctgctctatgg 653994

---

>gb|AC159433.1| Trypanosoma brucei chromosome 7 clone RPCI93-28I8, complete sequence
          Length = 153310

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 525    ttgggattaaaccaccaaagggtgttctgctctatgg 561
              |||| ||||||||||| ||||| || |||||||||||
Sbjct: 140830 ttggtattaaaccaccgaagggcgtgctgctctatgg 140794

---

>gb|AY458647.1| Uncultured bacterium 580 clone EBAC000-36A07 genomic sequence
          Length = 83177

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 146   caaagaaagattatgataaaactgaagat 174
             |||| ||||||||||| ||||||||||||
Sbjct: 18878 caaataaagattatgacaaaactgaagat 18850

---

>ref|XM_818777.1| Trypanosoma brucei TREU927 clone RPCI93-22O10 proteasome regulatory
           ATPase subunit 5 (Tb927.7.2550) partial mRNA
          Length = 1338

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 525 ttgggattaaaccaccaaagggtgttctgctctatgg 561
           |||| ||||||||||| ||||| || |||||||||||
Sbjct: 659 ttggtattaaaccaccgaagggcgtgctgctctatgg 695

---

>ref|XM_856540.1| PREDICTED: Canis familiaris similar to two AAA domain containing
            protein, transcript variant 3 (LOC475090), mRNA
          Length = 1695

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 557  tatggcccacctggaacgggaaagacattgcttgctagagc 597
            ||||||||||||||||| ||||| ||  || ||||||||||
Sbjct: 1342 tatggcccacctggaactggaaaaactctggttgctagagc 1382

---

>ref|XM_845427.1| PREDICTED: Canis familiaris similar to two AAA domain containing
            protein, transcript variant 2 (LOC475090), mRNA
          Length = 4304

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 557  tatggcccacctggaacgggaaagacattgcttgctagagc 597
            ||||||||||||||||| ||||| ||  || ||||||||||
Sbjct: 1342 tatggcccacctggaactggaaaaactctggttgctagagc 1382

---

>ref|XM_448116.1| Candida glabrata CBS138, CAGL0J09350g partial mRNA
          Length = 2493

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                    
Query: 530 attaaaccaccaaagggtgttctgctctatggcccacctgg 570
           ||||||||||||| ||||||| || | ||||| ||||||||
Sbjct: 733 attaaaccaccaaggggtgttttgatgtatggtccacctgg 773

---

>ref|XM_448608.1| Candida glabrata CBS138, CAGL0K08910g partial mRNA
          Length = 1311

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 524 gttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagaca 583
           ||||| || ||||| |||||||||||  || | ||||| |||||||| ||||| ||||| 
Sbjct: 625 gttggtataaaacctccaaagggtgtcttgttatatggaccacctggtacgggtaagacc 684

                
Query: 584 ttgct 588
           |||||
Sbjct: 685 ttgct 689

---

>gb|AC156613.9| Mus musculus chromosome 1, clone RP24-139P17, complete sequence
          Length = 132714

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 275   atgtggtcggctgcagaagcaaagt 299
             |||||||| ||||||||||||||||
Sbjct: 58941 atgtggtctgctgcagaagcaaagt 58965

---

>gb|AY034975.1| Arabidopsis thaliana putative 26S proteasome subunit 4 (At4g29040)
           mRNA, complete cds
          Length = 1590

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 525 ttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagacat 584
           |||| ||||||||||||||||||||  |  | |||||    |||||||| || |||||||
Sbjct: 716 ttggtattaaaccaccaaagggtgtaattttgtatggtgagcctggaactgggaagacat 775

                    
Query: 585 tgcttgcta 593
           |||||||||
Sbjct: 776 tgcttgcta 784

---

>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence
          Length = 1302002

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                          
Query: 524    gttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagaca 583
              ||||| || ||||| |||||||||||  || | ||||| |||||||| ||||| ||||| 
Sbjct: 892802 gttggtataaaacctccaaagggtgtcttgttatatggaccacctggtacgggtaagacc 892861

                   
Query: 584    ttgct 588
              |||||
Sbjct: 892862 ttgct 892866

---

>emb|CR380956.1| Candida glabrata strain CBS138 chromosome J complete sequence
          Length = 1192501

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                       
Query: 530    attaaaccaccaaagggtgttctgctctatggcccacctgg 570
              ||||||||||||| ||||||| || | ||||| ||||||||
Sbjct: 921654 attaaaccaccaaggggtgttttgatgtatggtccacctgg 921614

---

>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29
          Length = 296500

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 42     cgccgcccgccggcgcaccgtgatc 66
              |||||||||||| ||||||||||||
Sbjct: 202897 cgccgcccgccgccgcaccgtgatc 202921

---

>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
          Length = 198429

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                         
Query: 525   ttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagacat 584
             |||| ||||||||||||||||||||  |  | |||||    |||||||| || |||||||
Sbjct: 41191 ttggtattaaaccaccaaagggtgtaattttgtatggtgagcctggaactgggaagacat 41250

                      
Query: 585   tgcttgcta 593
             |||||||||
Sbjct: 41251 tgcttgcta 41259

---

>emb|AL078469.2|ATF25O24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25O24 (ESSA project)
          Length = 97714

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                         
Query: 525   ttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagacat 584
             |||| ||||||||||||||||||||  |  | |||||    |||||||| || |||||||
Sbjct: 66222 ttggtattaaaccaccaaagggtgtaattttgtatggtgagcctggaactgggaagacat 66281

                      
Query: 585   tgcttgcta 593
             |||||||||
Sbjct: 66282 tgcttgcta 66290

---

>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project)
          Length = 101679

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                         
Query: 525   ttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagacat 584
             |||| ||||||||||||||||||||  |  | |||||    |||||||| || |||||||
Sbjct: 24718 ttggtattaaaccaccaaagggtgtaattttgtatggtgagcctggaactgggaagacat 24777

                      
Query: 585   tgcttgcta 593
             |||||||||
Sbjct: 24778 tgcttgcta 24786

---

>emb|AJ251819.1|FSY251819 Fagus sylvatica mRNA for 26S proteasome subunit 8 (Tat binding
           protein) (a1 gene)
          Length = 1639

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 538 accaaagggtgttctgctctatggcccacctgg 570
           |||||||||||| ||||| ||||| ||||||||
Sbjct: 655 accaaagggtgtactgctatatgggccacctgg 687

---

>dbj|AB227161.1| Aspergillus oryzae cDNA, contig sequence: AoEST4025
          Length = 533

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 190 cagagtgtgggccaaatcattggtgaagt 218
           |||||||||||||| ||||| ||||||||
Sbjct: 302 cagagtgtgggccagatcatcggtgaagt 330

---

>gb|AF227503.1| Trypanosoma brucei proteasome regulatory ATPase subunit 5 (Rpt5)
           gene, complete cds
          Length = 1926

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 525 ttgggattaaaccaccaaagggtgttctgctctatgg 561
           |||| ||||||||||| ||||| || |||||||||||
Sbjct: 729 ttggtattaaaccaccgaagggcgtgctgctctatgg 765

---

>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 190    cagagtgtgggccaaatcattggtgaagt 218
              |||||||||||||| ||||| ||||||||
Sbjct: 143707 cagagtgtgggccagatcatcggtgaagt 143735

---

>gb|AC003046.4| Homo sapiens Xp22 PACs RPC11-263P4 and RPC11-164K3 complete sequence
          Length = 166757

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 284   gctgcagaagcaaagttgacaaaga 308
             |||| ||||||||||||||||||||
Sbjct: 83193 gctggagaagcaaagttgacaaaga 83217

---

>gb|AC139705.4| Homo sapiens X BAC RP11-102M2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 148316

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 284    gctgcagaagcaaagttgacaaaga 308
              |||| ||||||||||||||||||||
Sbjct: 126604 gctggagaagcaaagttgacaaaga 126580

---

>gb|AC007915.3|AC007915 Genomic sequence for Arabidopsis thaliana BAC F27F5 from chromosome I,
             complete sequence
          Length = 137336

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 72/89 (80%)
 Strand = Plus / Plus

                                                                         
Query: 259   agtagtgggccacgttatgtggtcggctgcagaagcaaagttgacaaagaaaagctgaca 318
             |||||||| || ||||||||||| || ||  | ||||| || ||||| |||||||| || 
Sbjct: 35784 agtagtggccctcgttatgtggtgggttgtcgtagcaaggtggacaaggaaaagcttact 35843

                                          
Query: 319   gctgcaacacgagttgtccttgacatgac 347
              ||| ||| ||||||||||| || |||||
Sbjct: 35844 tctggaactcgagttgtcctggatatgac 35872

---

>ref|XM_235326.3| PREDICTED: Rattus norvegicus ATPase family, AAA domain containing 2
            (predicted) (Atad2_predicted), mRNA
          Length = 4386

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                     
Query: 557  tatggcccacctggaacgggaaagacattgcttgctagagc 597
            ||||| ||||||||||| ||||| ||| || ||||||||||
Sbjct: 1513 tatggaccacctggaactggaaaaacactggttgctagagc 1553

---

>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1014_H03
          Length = 132696

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 138   aaaaaaggcaaagaaagatta 158
             |||||||||||||||||||||
Sbjct: 31817 aaaaaaggcaaagaaagatta 31837

---

>dbj|AB161192.1| Arabidopsis thaliana HLR mRNA for 26S proteasome subunit AtRPT2a,
           complete cds
          Length = 1574

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 525 ttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagacat 584
           |||| ||||||||||||||||||||  |  | |||||    |||||||| || |||||||
Sbjct: 716 ttggtattaaaccaccaaagggtgtaattttgtatggtgagcctggaactgggaagacat 775

                    
Query: 585 tgcttgcta 593
           |||||||||
Sbjct: 776 tgcttgcta 784

---

>dbj|AK106217.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-H03, full
           insert sequence
          Length = 1653

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 538 accaaagggtgttctgctctatggcccacctggaacgggaaagacattg 586
           |||||||||||| || ||||||||||| || || || ||||| ||||||
Sbjct: 653 accaaagggtgtccttctctatggccctccaggcacaggaaaaacattg 701

---

>dbj|AK102286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089I16, full
           insert sequence
          Length = 1772

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 538 accaaagggtgttctgctctatggcccacctggaacgggaaagacattg 586
           |||||||||||| || ||||||||||| || || || ||||| ||||||
Sbjct: 753 accaaagggtgtccttctctatggccctccaggcacaggaaaaacattg 801

---

>gb|AF123391.1|AF123391 Arabidopsis thaliana 26S proteasome AAA-ATPase subunit RPT2a
           (RPT2a) mRNA, complete cds
          Length = 1568

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 57/69 (82%)
 Strand = Plus / Plus

                                                                       
Query: 525 ttgggattaaaccaccaaagggtgttctgctctatggcccacctggaacgggaaagacat 584
           |||| ||||||||||||||||||||  |  | |||||    |||||||| || |||||||
Sbjct: 715 ttggtattaaaccaccaaagggtgtaattttgtatggtgagcctggaactgggaagacat 774

                    
Query: 585 tgcttgcta 593
           |||||||||
Sbjct: 775 tgcttgcta 783

---

>dbj|AK061762.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B03, full
           insert sequence
          Length = 1653

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 538 accaaagggtgttctgctctatggcccacctggaacgggaaagacattg 586
           |||||||||||| || ||||||||||| || || || ||||| ||||||
Sbjct: 653 accaaagggtgtccttctctatggccctccaggcacaggaaaaacattg 701

---

>gb|AC079134.24| Mus musculus chromosome 1, clone RP23-395H12, complete sequence
          Length = 204915

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 275   atgtggtcggctgcagaagcaaagt 299
             |||||||| ||||||||||||||||
Sbjct: 30429 atgtggtctgctgcagaagcaaagt 30405

---

>emb|AJ409118.1|PLA409118 Phaeoceros laevis mitochondrial partial nad2 gene for NADH
            dehydrogenase subunit 2, exons 1-3
          Length = 5054

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 36   gtcggccgccgcccgccggcg 56
            |||||||||||||||||||||
Sbjct: 4627 gtcggccgccgcccgccggcg 4607

---

>dbj|AB052887.1| Oryza sativa mRNA for 26S proteasome ATPase subunit Rpt6, complete
           cds
          Length = 1516

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 538 accaaagggtgttctgctctatggcccacctggaacgggaaagacattg 586
           |||||||||||| || ||||||||||| || || || ||||| ||||||
Sbjct: 635 accaaagggtgtccttctctatggccctccaggcacaggaaaaacattg 683

---

>dbj|AB033537.1| Oryza sativa (japonica cultivar-group) OsRPT6 mRNA for 26S
           proteasome regulatory particle triple-A ATPase subunit6,
           complete cds
          Length = 1625

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 538 accaaagggtgttctgctctatggcccacctggaacgggaaagacattg 586
           |||||||||||| || ||||||||||| || || || ||||| ||||||
Sbjct: 746 accaaagggtgtccttctctatggccctccaggcacaggaaaaacattg 794

---

>ref|XM_467074.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 315

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 38 cggccgccgcccgccggcgc 57
          ||||||||||||||||||||
Sbjct: 23 cggccgccgcccgccggcgc 4

---

>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940117D9, complete sequence
          Length = 143368

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gccgacgacgtcggccgccg 46
             ||||||||||||||||||||
Sbjct: 45613 gccgacgacgtcggccgccg 45594

---

>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
              sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 559    tggcccacctggaacgggaaagac 582
              |||||| |||||||||||||||||
Sbjct: 277475 tggccctcctggaacgggaaagac 277452

---

>ref|XM_368202.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
           (MG01042.4) partial mRNA
          Length = 1245

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/31 (93%), Gaps = 2/31 (6%)
 Strand = Plus / Plus

                                          
Query: 29  cgacgacgtcg--gccgccgcccgccggcgc 57
           |||||||||||  ||||||||||||||||||
Sbjct: 246 cgacgacgtcgacgccgccgcccgccggcgc 276

---

>ref|XM_952955.1| Neurospora crassa OR74A hypothetical protein (NCU06942.1) partial
           mRNA
          Length = 1326

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 542 aagggtgttctgctctatggcccacctggaacgggaaaga 581
           |||||| || |||| ||||||||||| ||||| |||||||
Sbjct: 517 aagggtattttgctgtatggcccaccgggaacaggaaaga 556

---

>ref|XM_953767.1| Neurospora crassa OR74A hypothetical protein ( 26s protease
           regulatory subunit S10b - fission yeast
           (Schizosaccharomyces pombe) (fragment) ) (NCU07367.1)
           partial mRNA
          Length = 771

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 542 aagggtgttctgctctatggcccacctggaacgggaaagacatt 585
           ||||||||  ||||||||||||| || || || |||||||||||
Sbjct: 505 aagggtgtcttgctctatggccctccaggtaccggaaagacatt 548

---

>ref|XM_327227.1| Neurospora crassa OR74A hypothetical protein (NCU06942.1) partial
           mRNA
          Length = 1326

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                   
Query: 542 aagggtgttctgctctatggcccacctggaacgggaaaga 581
           |||||| || |||| ||||||||||| ||||| |||||||
Sbjct: 517 aagggtattttgctgtatggcccaccgggaacaggaaaga 556

---

>ref|XM_327652.1| Neurospora crassa OR74A hypothetical protein ( 26s protease
           regulatory subunit S10b - fission yeast
           (Schizosaccharomyces pombe) (fragment) ) (NCU07367.1)
           partial mRNA
          Length = 771

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 542 aagggtgttctgctctatggcccacctggaacgggaaagacatt 585
           ||||||||  ||||||||||||| || || || |||||||||||
Sbjct: 505 aagggtgtcttgctctatggccctccaggtaccggaaagacatt 548

---

>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 158     atgataaaactgaagatgat 177
               ||||||||||||||||||||
Sbjct: 1179016 atgataaaactgaagatgat 1178997

---

>ref|XM_566529.1| Cryptococcus neoformans var. neoformans JEC21 RVB1 (CNA00990)
           partial mRNA
          Length = 1515

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 559 tggcccacctggaacgggaaagac 582
           |||||| |||||||||||||||||
Sbjct: 276 tggccctcctggaacgggaaagac 299

---

>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     cggccgccgcccgccggcgc 57
              ||||||||||||||||||||
Sbjct: 134388 cggccgccgcccgccggcgc 134369



 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 38     cggccgccgcccgccggcgc 57
              ||||||||||||||||||||
Sbjct: 103830 cggccgccgcccgccggcgc 103849

---

>ref|XM_948556.1| Theileria annulata strain Ankara metalloprotease/cell division
           cycle protein (TA16460) partial mRNA
          Length = 2418

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 560 ggcccacctggaacgggaaagaca 583
           |||||||| |||||||||||||||
Sbjct: 811 ggcccaccgggaacgggaaagaca 834

---

>emb|AL359474.16| Human DNA sequence from clone RP11-747O7 on chromosome 6, complete
              sequence
          Length = 129451

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 294    caaagttgacaaagaaaagc 313
              ||||||||||||||||||||
Sbjct: 125115 caaagttgacaaagaaaagc 125096

---

>emb|AL161731.20| Human DNA sequence from clone RP11-489N22 on chromosome 9 Contains the
             3' end of the LMX1B gene for LIM homeobox transcription
             factor 1, beta (NPS1, LMX1.2), the ZNF297B gene for zinc
             finger protein 297B (ZNF-X, FLJ22470, KIAA0414) and three
             CpG islands, complete sequence
          Length = 182452

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   aaaaaaggcaaagaaagatt 157
             ||||||||||||||||||||
Sbjct: 53898 aaaaaaggcaaagaaagatt 53879

---

>emb|AL139092.12| Human DNA sequence from clone RP11-420G6 on chromosome 6 Contains the
             gene for werners helicase interacting protein (WHIP)
             (RUVBL), the SERPINB1 gene for serine (or cysteine)
             proteinase inhibitor clade B (ovalbumin) member 1, a
             putative novel gene and the 3' end of a putative novel
             gene, complete sequence
          Length = 168147

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   agattatgataaaactgaag 172
             ||||||||||||||||||||
Sbjct: 81223 agattatgataaaactgaag 81242

---

>gb|U00020.1| Mycobacterium leprae cosmid B229
          Length = 36947

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ggatatggccgaggccgacg 33
             ||||||||||||||||||||
Sbjct: 14005 ggatatggccgaggccgacg 14024

---

>gb|AF332134.1| Medicago sativa FtsH protease (FtsH) mRNA, complete cds;
           chloroplast gene for chloroplast product
          Length = 2352

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 563 ccacctggaacgggaaagacattg 586
           ||||||||||| ||||||||||||
Sbjct: 932 ccacctggaactggaaagacattg 955

---

>emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 238147

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                      
Query: 543    agggtgttctgctctatggcccacctggaacgggaaagac 582
              |||| |||||||||||||| || || |||||||| |||||
Sbjct: 218322 agggcgttctgctctatgggccgcccggaacggggaagac 218361

---

>emb|AL583918.1|MLEPRTN2 Mycobacterium leprae strain TN complete genome; segment 2/10
          Length = 344050

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ggatatggccgaggccgacg 33
              ||||||||||||||||||||
Sbjct: 119216 ggatatggccgaggccgacg 119197

---

>emb|AJ223384.1|MSE223384 Manduca sexta mRNA for 26S proteasome regulatory ATPase subunit 10b
           (S10b)
          Length = 1346

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 536 ccaccaaagggtgttctgctctatggcccacctggaacgggaaa 579
           ||||||||||||   ||||| |||||||||||||| || |||||
Sbjct: 606 ccaccaaagggttgcctgctgtatggcccacctggtacaggaaa 649

---

>gb|AC163889.2| Glomus intraradices clone JGIATSX-5M1, complete sequence
          Length = 39326

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 425  atgtcagttactcagctgta 444
            ||||||||||||||||||||
Sbjct: 4137 atgtcagttactcagctgta 4118

---

>gb|AC097060.2| Homo sapiens chromosome 1 clone RP11-412H9, complete sequence
          Length = 139177

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 330   agttgtccttgacatgacaacttt 353
             |||| |||||||||||||||||||
Sbjct: 61393 agttttccttgacatgacaacttt 61370

---

>ref|NM_058125.3| Drosophila melanogaster Rpt1 CG1341-RA (Rpt1), mRNA
          Length = 1513

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 559 tggcccacctggaacgggaaagac 582
           ||||||||| ||||||||||||||
Sbjct: 756 tggcccaccgggaacgggaaagac 779

---

>gb|AC099794.2| Homo sapiens chromosome 1 clone RP4-771M4, complete sequence
          Length = 134341

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   taaaaaaggcaaagaaagat 156
             ||||||||||||||||||||
Sbjct: 53573 taaaaaaggcaaagaaagat 53554

---

>gb|AY061606.1| Drosophila melanogaster SD07148 full length cDNA
          Length = 1518

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 559 tggcccacctggaacgggaaagac 582
           ||||||||| ||||||||||||||
Sbjct: 740 tggcccaccgggaacgggaaagac 763

---

>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V,
              complete sequence
          Length = 1519138

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 539    ccaaagggtgttctgctctatggcccacctgg 570
              ||||| ||| |||||||||||||||| |||||
Sbjct: 754672 ccaaaaggtattctgctctatggcccccctgg 754641

---

>gb|AC131108.3| Mus musculus BAC clone RP23-351K24 from chromosome 16, complete
             sequence
          Length = 175409

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   agaaagattatgataaaact 168
             ||||||||||||||||||||
Sbjct: 31960 agaaagattatgataaaact 31941

---

>gb|AC093046.1| Drosophila melanogaster, chromosome 2R, region 43D-43E, BAC clone
             BACR29D02, complete sequence
          Length = 158372

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 559   tggcccacctggaacgggaaagac 582
             ||||||||| ||||||||||||||
Sbjct: 73863 tggcccaccgggaacgggaaagac 73840

---

>gb|AC008259.4|AC008259 Drosophila melanogaster, chromosome 2R, region 43D-43D, BAC clone
              BACR04H12, complete sequence
          Length = 175285

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 559    tggcccacctggaacgggaaagac 582
              ||||||||| ||||||||||||||
Sbjct: 146380 tggcccaccgggaacgggaaagac 146357

---

>dbj|AK037972.1| Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
           enriched library, clone:A130068D08
           product:unclassifiable, full insert sequence
          Length = 2296

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 149 agaaagattatgataaaact 168
           ||||||||||||||||||||
Sbjct: 217 agaaagattatgataaaact 236

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 553      gctctatggcccacctggaa 572
                ||||||||||||||||||||
Sbjct: 16822665 gctctatggcccacctggaa 16822646

---

>gb|AC104666.3| Homo sapiens BAC clone RP11-771N14 from 2, complete sequence
          Length = 23884

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   aaagaaagattatgataaaa 166
             ||||||||||||||||||||
Sbjct: 20067 aaagaaagattatgataaaa 20048

---

>gb|AF145307.1|AF145307 Drosophila melanogaster 26S proteasome regulatory complex subunit
           p48B mRNA, complete cds
          Length = 1302

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 559 tggcccacctggaacgggaaagac 582
           ||||||||| ||||||||||||||
Sbjct: 645 tggcccaccgggaacgggaaagac 668

---

>gb|AC107815.11| Mus musculus chromosome 7, clone RP23-114A6, complete sequence
          Length = 228068

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    aaagaaagattatgataaaa 166
              ||||||||||||||||||||
Sbjct: 105468 aaagaaagattatgataaaa 105449

---

>dbj|AP005559.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1163_C07
          Length = 107121

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 553   gctctatggcccacctggaa 572
             ||||||||||||||||||||
Sbjct: 20356 gctctatggcccacctggaa 20337

---

>dbj|AP004891.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0705A04
          Length = 182468

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 553   gctctatggcccacctggaa 572
             ||||||||||||||||||||
Sbjct: 58428 gctctatggcccacctggaa 58409

---

>dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0691E09
          Length = 149859

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 553   gctctatggcccacctggaa 572
             ||||||||||||||||||||
Sbjct: 40141 gctctatggcccacctggaa 40160

---

>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0417G12
          Length = 163568

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 553    gctctatggcccacctggaa 572
              ||||||||||||||||||||
Sbjct: 143510 gctctatggcccacctggaa 143529

---

>dbj|AP007203.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0012J10
          Length = 132375

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    cggccgccgcccgccggcgc 57
             ||||||||||||||||||||
Sbjct: 87447 cggccgccgcccgccggcgc 87428

---

>ref|NM_210279.1| Eremothecium gossypii AER065Cp (AER065C), mRNA
          Length = 2325

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 539  ccaaagggtgttctgctctatggcccacctgg 570
            ||||| ||| |||||||||||||||| |||||
Sbjct: 1633 ccaaaaggtattctgctctatggcccccctgg 1664

---

>gb|AE003840.3| Drosophila melanogaster chromosome 2R, section 10 of 73 of the complete
              sequence
          Length = 272100

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 559    tggcccacctggaacgggaaagac 582
              ||||||||| ||||||||||||||
Sbjct: 136784 tggcccaccgggaacgggaaagac 136761

---

>gb|AC005447.1|AC005447 Drosophila melanogaster, chromosome 2R, region 43E5-43E10, P1 clone
             DS03503, complete sequence
          Length = 77907

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 559   tggcccacctggaacgggaaagac 582
             ||||||||| ||||||||||||||
Sbjct: 51032 tggcccaccgggaacgggaaagac 51009

---

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 20      ggccgaggccgacgacgtcg 39
               ||||||||||||||||||||
Sbjct: 2962391 ggccgaggccgacgacgtcg 2962410

---

>emb|AL590449.1|CNS07EGG chromosome X of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 262797

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 543   agggtgttctgctctatggcccacctggaacgggaaagac 582
             |||| |||||||||||||| || || |||||||| |||||
Sbjct: 15085 agggcgttctgctctatgggccgcccggaacggggaagac 15124

---

>gb|AF071195.1|AF071195 Gossypium hirsutum 26S protease regulatory subunit (PRA1) mRNA,
           partial cds
          Length = 264

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                   
Query: 163 aaaactgaagatgatttgaagtccttgcagagtgtgggccaaatcattggtgaagt 218
           ||||| ||||||||||| |||||  | |||||||| || || |||||||| |||||
Sbjct: 54  aaaacagaagatgatttaaagtctcttcagagtgttggacagatcattggagaagt 109

---

>gb|U70208.1|LCU70208 La Crosse virus polyprotein gene, complete cds
          Length = 4526

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 151  aaagattatgataaaactgaagat 174
            |||||||||||||||||| |||||
Sbjct: 2690 aaagattatgataaaactcaagat 2713

---

>gb|U70207.1|LCU70207 La Crosse virus polyprotein gene, complete cds
          Length = 4526

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 151  aaagattatgataaaactgaagat 174
            |||||||||||||||||| |||||
Sbjct: 2690 aaagattatgataaaactcaagat 2713

---

>emb|AL773534.10| Mouse DNA sequence from clone RP23-183O12 on chromosome 2, complete
             sequence
          Length = 216706

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   aaaagctgacagctgcaaca 327
             ||||||||||||||||||||
Sbjct: 52726 aaaagctgacagctgcaaca 52745

---

>emb|AL833777.11| Mouse DNA sequence from clone RP23-150D10 on chromosome X, complete
             sequence
          Length = 189554

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   aaaactgaagatgatttgaa 182
             ||||||||||||||||||||
Sbjct: 60525 aaaactgaagatgatttgaa 60544

---

>gb|L14320.1|HSBBICP4A Bovine herpesvirus type 1 early-intermediate transcription control
            protein (BICP4) gene, complete cds
          Length = 8113

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 38   cggccgccgcccgccggcgc 57
            ||||||||||||||||||||
Sbjct: 7201 cggccgccgcccgccggcgc 7182


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,080,605
Number of Sequences: 3902068
Number of extensions: 5080605
Number of successful extensions: 112100
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 111241
Number of HSP's gapped (non-prelim): 839
length of query: 619
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 596
effective length of database: 17,143,297,704
effective search space: 10217405431584
effective search space used: 10217405431584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---