ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags15j05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK101611.1| Oryza sativa (japonica cultivar-group) cDNA clon... 448 e-123
2gb|AY110754.1| Zea mays CL19491_1 mRNA sequence 228 1e-56
3emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 155 2e-34
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
5ref|NM_121681.2| Arabidopsis thaliana TOZ (TORMOZEMBRYO DEFECTIV... 54 4e-04
6gb|AY117219.1| Arabidopsis thaliana putative WD40-repeat protein... 54 4e-04
7gb|AY056281.1| Arabidopsis thaliana putative WD40-repeat protein... 54 4e-04
8gb|AY120781.1| Arabidopsis thaliana WD40-repeat protein (At5g167... 54 4e-04
9emb|AL772337.17| Human DNA sequence from clone XXyac-21GA2 on ch... 46 0.11
10gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, c... 44 0.43
11emb|AL034395.6|HS243L18 Human DNA sequence from clone RP1-243L18... 42 1.7
12emb|AL391147.1|ATF5E19 Arabidopsis thaliana DNA chromosome 5, BA... 42 1.7
13gb|AC121149.12| Mus musculus chromosome 3, clone RP24-383A4, com... 40 6.7
14ref|XM_723741.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 6.7
15ref|XM_674436.1| Plasmodium berghei strain ANKA Pb-fam-2 protein... 40 6.7
16gb|AC148304.3| Medicago truncatula clone mth2-21b19, complete se... 40 6.7
17gb|AC155807.3| Mus musculus BAC clone RP24-303N21 from chromosom... 40 6.7
18emb|AJ400871.1|SJA400871 Scomber japonicus mRNA for endoplasmic ... 40 6.7
19gb|AC087378.6| Homo sapiens chromosome 11, clone RP11-375L11, co... 40 6.7
20gb|AC106763.2| Homo sapiens chromosome 5 clone RP11-21C10, compl... 40 6.7
21gb|AC009379.7| Drosophila melanogaster 3L BAC RP98-48M6 (Roswell... 40 6.7
22gb|AC009378.7| Drosophila melanogaster 3L BAC RP98-9E8 (Roswell ... 40 6.7
23gb|AC104947.3| Homo sapiens chromosome 11, clone RP11-1029L14, c... 40 6.7
24gb|AC011433.5| Homo sapiens chromosome 5 clone P1_988H11, comple... 40 6.7
25gb|AC090423.11| Homo sapiens Xp BAC RP11-86G5 (Roswell Park Canc... 40 6.7
26gb|AC093827.3| Homo sapiens BAC clone RP11-397E7 from 4, complet... 40 6.7
27gb|AC164078.4| Mus musculus chromosome 3, clone RP23-123C15, com... 40 6.7
28gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complet... 40 6.7
29gb|AC147620.5| Mus musculus BAC clone RP24-285H21 from chromosom... 40 6.7
30gb|AC158611.7| Mus musculus 10 BAC RP23-29D19 (Roswell Park Canc... 40 6.7
31gb|AF151801.1|AF151801 Homo sapiens CGI-43 protein mRNA, complet... 40 6.7
32gb|AE003518.3| Drosophila melanogaster chromosome 3L, section 67... 40 6.7
33emb|AL929199.11| Mouse DNA sequence from clone RP23-458A10 on ch... 40 6.7
34emb|AJ403344.1|MMU403344 M.musculus DNA for desmin-binding fragm... 40 6.7
35emb|AJ403309.1|MMU403309 M.musculus DNA for desmin-binding fragm... 40 6.7
36emb|AJ403143.1|MMU403143 M.musculus DNA for vimentin-binding fra... 40 6.7
37emb|AL732459.5| Mouse DNA sequence from clone RP23-115J4 on chro... 40 6.7
38gb|M32554.1|MUSGSAT9D Mouse gamma-satellite DNA, clone 9D 40 6.7 
>dbj|AK101611.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052D05, full
            insert sequence
          Length = 3158

 Score =  448 bits (226), Expect = e-123
 Identities = 416/478 (87%), Gaps = 1/478 (0%)
 Strand = Plus / Plus

                                                                        
Query: 16   tgttgctgatggctcatgcctga-gacatttgagggtcatacgtcaagtgttttgagagc 74
            |||||||||||| |||||| ||| |||||||||||| ||||| || ||||||||  ||||
Sbjct: 1808 tgttgctgatggttcatgcttgaagacatttgagggccatacatctagtgttttacgagc 1867

                                                                        
Query: 75   ttcattcctttcacgtggaactcagtttgtttcttgtggaagcgatggtctagtgaagct 134
             |||||||||||||  || || || ||||||||||||||||||||||| || || |||||
Sbjct: 1868 ctcattcctttcacacgggacccaatttgtttcttgtggaagcgatggccttgttaagct 1927

                                                                        
Query: 135  atggacgataaaaacgaatgagtgcattgctacatatgacaagcacgatgggaaggtttg 194
            |||||| || ||||| ||||| ||||||||||| |  || ||||| ||||||||||||||
Sbjct: 1928 atggaccatcaaaacaaatgaatgcattgctactttcgataagcatgatgggaaggtttg 1987

                                                                        
Query: 195  ggcactggctgttggcaagaaaactgaaattcttgctactggtggaactgattctgatct 254
            |||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |||
Sbjct: 1988 ggcactggctgttggcaagaaaactgaaatgcttgctactggcggaactgatgctgttct 2047

                                                                        
Query: 255  taacctttggtatgattgcacgttggaagataagcaggaggatttccttaagaaggagga 314
            |||||||||| |||| || ||  |||||||||| ||||| ||||| | ||| ||||||||
Sbjct: 2048 taacctttggcatgactgtaccatggaagataaacaggaagattttcgtaaaaaggagga 2107

                                                                        
Query: 315  ggaagttttaagaggccaggaattggaaaatgcagtgtcagattctgactatacaagagc 374
            |||| | || ||||| |||||||| ||||||||||| ||||||| ||||||| ||| |||
Sbjct: 2108 ggaactgttgagaggtcaggaattagaaaatgcagtatcagattatgactatgcaaaagc 2167

                                                                        
Query: 375  aatacaactcgcatttgagcttagaagaccacgcaggcttcttgagttattctcacaact 434
            ||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||| ||
Sbjct: 2168 aatacaacttgcatttgagcttagaagaccccacaggcttcttgagttattcacacagct 2227

                                                                      
Query: 435  ttgcaggaaagctgatccagaggaccctatagaaaaagcccttgttggtctcccaaag 492
            ||||||| |  ||||||  |||||||| ||||||||||||||| ||||||| ||||||
Sbjct: 2228 ttgcagggagtctgatctggaggacccaatagaaaaagcccttattggtcttccaaag 2285
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>gb|AY110754.1| Zea mays CL19491_1 mRNA sequence
          Length = 1005

 Score =  228 bits (115), Expect = 1e-56
 Identities = 199/227 (87%)
 Strand = Plus / Minus

                                                                       
Query: 266 atgattgcacgttggaagataagcaggaggatttccttaagaaggaggaggaagttttaa 325
           ||||||||||  |||||||||||||||| ||||||| |||||||||| | ||||||||||
Sbjct: 969 atgattgcaccatggaagataagcaggaagatttccgtaagaaggagcaagaagttttaa 910

                                                                       
Query: 326 gaggccaggaattggaaaatgcagtgtcagattctgactatacaagagcaatacaactcg 385
           |||||||||||||||||||||| |||||||||||||||||| |||  ||||||||||| |
Sbjct: 909 gaggccaggaattggaaaatgctgtgtcagattctgactatgcaaaggcaatacaacttg 850

                                                                       
Query: 386 catttgagcttagaagaccacgcaggcttcttgagttattctcacaactttgcaggaaag 445
           ||||||||||||||||||||| || |||||| || ||||||||||| |||  ||||  ||
Sbjct: 849 catttgagcttagaagaccacacaagcttctagatttattctcacagcttgccaggcgag 790

                                                          
Query: 446 ctgatccagaggaccctatagaaaaagcccttgttggtctcccaaag 492
           ||||  ||||||| || |||||||| || ||| ||||||| ||||||
Sbjct: 789 ctgacgcagaggatccaatagaaaaggctcttcttggtcttccaaag 743
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>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
             complete sequence
          Length = 179644

 Score =  155 bits (78), Expect = 2e-34
 Identities = 120/134 (89%)
 Strand = Plus / Minus

                                                                         
Query: 308   aggaggaggaagttttaagaggccaggaattggaaaatgcagtgtcagattctgactata 367
             ||||||||||| | || ||||| |||||||| ||||||||||| ||||||| ||||||| 
Sbjct: 92771 aggaggaggaactgttgagaggtcaggaattagaaaatgcagtatcagattatgactatg 92712

                                                                         
Query: 368   caagagcaatacaactcgcatttgagcttagaagaccacgcaggcttcttgagttattct 427
             ||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| 
Sbjct: 92711 caaaagcaatacaacttgcatttgagcttagaagaccccacaggcttcttgagttattca 92652

                           
Query: 428   cacaactttgcagg 441
             |||| |||||||||
Sbjct: 92651 cacagctttgcagg 92638



 Score =  135 bits (68), Expect = 2e-28
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                         
Query: 188   aggtttgggcactggctgttggcaagaaaactgaaattcttgctactggtggaactgatt 247
             ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| 
Sbjct: 93190 aggtttgggcactggctgttggcaagaaaactgaaatgcttgctactggcggaactgatg 93131

                                                                 
Query: 248   ctgatcttaacctttggtatgattgcacgttggaagataagcaggaggattt 299
             ||| ||||||||||||| |||| || ||  |||||||||| ||||| |||||
Sbjct: 93130 ctgttcttaacctttggcatgactgtaccatggaagataaacaggaagattt 93079



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 85/99 (85%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                         
Query: 16    tgttgctgatggctcatgcctga-gacatttgagggtcatacgtcaagtgttttgagagc 74
             |||||||||||| |||||| ||| |||||||||||| ||||| || ||||||||  ||||
Sbjct: 93919 tgttgctgatggttcatgcttgaagacatttgagggccatacatctagtgttttacgagc 93860

                                                    
Query: 75    ttcattcctttcacgtggaactcagtttgtttcttgtgg 113
              |||||||||||||  || || || ||||||||||||||
Sbjct: 93859 ctcattcctttcacacgggacccaatttgtttcttgtgg 93821



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                         
Query: 112   ggaagcgatggtctagtgaagctatggacgataaaaacgaatgagtgcattgctacatat 171
             ||||||||||| || || ||||||||||| || ||||| ||||| ||||||||||| |  
Sbjct: 93737 ggaagcgatggccttgttaagctatggaccatcaaaacaaatgaatgcattgctactttc 93678

                                 
Query: 172   gacaagcacgatgggaaggt 191
             || ||||| |||||||||||
Sbjct: 93677 gataagcatgatgggaaggt 93658



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 454   gaggaccctatagaaaaagcccttgttggtctcccaaag 492
             |||||||| ||||||||||||||| ||||||| ||||||
Sbjct: 92552 gaggacccaatagaaaaagcccttattggtcttccaaag 92514
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  155 bits (78), Expect = 2e-34
 Identities = 120/134 (89%)
 Strand = Plus / Minus

                                                                            
Query: 308      aggaggaggaagttttaagaggccaggaattggaaaatgcagtgtcagattctgactata 367
                ||||||||||| | || ||||| |||||||| ||||||||||| ||||||| ||||||| 
Sbjct: 29956019 aggaggaggaactgttgagaggtcaggaattagaaaatgcagtatcagattatgactatg 29955960

                                                                            
Query: 368      caagagcaatacaactcgcatttgagcttagaagaccacgcaggcttcttgagttattct 427
                ||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| 
Sbjct: 29955959 caaaagcaatacaacttgcatttgagcttagaagaccccacaggcttcttgagttattca 29955900

                              
Query: 428      cacaactttgcagg 441
                |||| |||||||||
Sbjct: 29955899 cacagctttgcagg 29955886



 Score =  135 bits (68), Expect = 2e-28
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                            
Query: 188      aggtttgggcactggctgttggcaagaaaactgaaattcttgctactggtggaactgatt 247
                ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| 
Sbjct: 29956438 aggtttgggcactggctgttggcaagaaaactgaaatgcttgctactggcggaactgatg 29956379

                                                                    
Query: 248      ctgatcttaacctttggtatgattgcacgttggaagataagcaggaggattt 299
                ||| ||||||||||||| |||| || ||  |||||||||| ||||| |||||
Sbjct: 29956378 ctgttcttaacctttggcatgactgtaccatggaagataaacaggaagattt 29956327



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 85/99 (85%), Gaps = 1/99 (1%)
 Strand = Plus / Minus

                                                                            
Query: 16       tgttgctgatggctcatgcctga-gacatttgagggtcatacgtcaagtgttttgagagc 74
                |||||||||||| |||||| ||| |||||||||||| ||||| || ||||||||  ||||
Sbjct: 29957167 tgttgctgatggttcatgcttgaagacatttgagggccatacatctagtgttttacgagc 29957108

                                                       
Query: 75       ttcattcctttcacgtggaactcagtttgtttcttgtgg 113
                 |||||||||||||  || || || ||||||||||||||
Sbjct: 29957107 ctcattcctttcacacgggacccaatttgtttcttgtgg 29957069



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                            
Query: 112      ggaagcgatggtctagtgaagctatggacgataaaaacgaatgagtgcattgctacatat 171
                ||||||||||| || || ||||||||||| || ||||| ||||| ||||||||||| |  
Sbjct: 29956985 ggaagcgatggccttgttaagctatggaccatcaaaacaaatgaatgcattgctactttc 29956926

                                    
Query: 172      gacaagcacgatgggaaggt 191
                || ||||| |||||||||||
Sbjct: 29956925 gataagcatgatgggaaggt 29956906



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 454      gaggaccctatagaaaaagcccttgttggtctcccaaag 492
                |||||||| ||||||||||||||| ||||||| ||||||
Sbjct: 29955800 gaggacccaatagaaaaagcccttattggtcttccaaag 29955762
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>ref|NM_121681.2| Arabidopsis thaliana TOZ (TORMOZEMBRYO DEFECTIVE); nucleotide binding
            AT5G16750 (TOZ) mRNA, complete cds
          Length = 2902

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                        
Query: 154  gagtgcattgctacatatgacaagcacgatgggaaggtttgggcactggctgttggcaag 213
            ||||||||||| ||||||||| ||||||| |  ||||| |||||  | |||||||| |||
Sbjct: 1922 gagtgcattgccacatatgaccagcacgaggacaaggtatgggctttagctgttggaaag 1981

                                       
Query: 214  aaaactgaaattcttgctactggtgga 240
            || || |||||  |||| |||||||||
Sbjct: 1982 aagacagaaatgattgcaactggtgga 2008
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>gb|AY117219.1| Arabidopsis thaliana putative WD40-repeat protein (At5g16750) mRNA,
            complete cds
          Length = 2101

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                        
Query: 154  gagtgcattgctacatatgacaagcacgatgggaaggtttgggcactggctgttggcaag 213
            ||||||||||| ||||||||| ||||||| |  ||||| |||||  | |||||||| |||
Sbjct: 1285 gagtgcattgccacatatgaccagcacgaggacaaggtatgggctttagctgttggaaag 1344

                                       
Query: 214  aaaactgaaattcttgctactggtgga 240
            || || |||||  |||| |||||||||
Sbjct: 1345 aagacagaaatgattgcaactggtgga 1371
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>gb|AY056281.1| Arabidopsis thaliana putative WD40-repeat protein (At5g16750) mRNA,
            complete cds
          Length = 2334

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                        
Query: 154  gagtgcattgctacatatgacaagcacgatgggaaggtttgggcactggctgttggcaag 213
            ||||||||||| ||||||||| ||||||| |  ||||| |||||  | |||||||| |||
Sbjct: 1338 gagtgcattgccacatatgaccagcacgaggacaaggtatgggctttagctgttggaaag 1397

                                       
Query: 214  aaaactgaaattcttgctactggtgga 240
            || || |||||  |||| |||||||||
Sbjct: 1398 aagacagaaatgattgcaactggtgga 1424
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>gb|AY120781.1| Arabidopsis thaliana WD40-repeat protein (At5g16750) mRNA, partial
            cds
          Length = 2545

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 72/87 (82%)
 Strand = Plus / Plus

                                                                        
Query: 154  gagtgcattgctacatatgacaagcacgatgggaaggtttgggcactggctgttggcaag 213
            ||||||||||| ||||||||| ||||||| |  ||||| |||||  | |||||||| |||
Sbjct: 1922 gagtgcattgccacatatgaccagcacgaggacaaggtatgggctttagctgttggaaag 1981

                                       
Query: 214  aaaactgaaattcttgctactggtgga 240
            || || |||||  |||| |||||||||
Sbjct: 1982 aagacagaaatgattgcaactggtgga 2008
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>emb|AL772337.17| Human DNA sequence from clone XXyac-21GA2 on chromosome 9 Contains a
             pseudogene similar to part of E74-like factor 2 (ets
             domain transcription factor) (EU32, NERF, NERF-2,
             NERF-1A,NERF-1B) (ELF2), a cathepsin L (MEP, CATL) (CTSL)
             pseudogene, a pseudogene similar to part of a
             fructose-1,6-bisphosphatase protein, two novel genes, a
             novel gene (FLJ35866) and a CpG island, complete sequence
          Length = 95932

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 11    gggcatgttgctgatggctcatgcctg 37
             ||||||||||||| |||||||||||||
Sbjct: 34601 gggcatgttgctggtggctcatgcctg 34575
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>gb|AC123624.13| Mus musculus chromosome 16, clone RP23-133E12, complete sequence
          Length = 214202

 Score = 44.1 bits (22), Expect = 0.43
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 350    tgtcagattctgactatacaagagca 375
              |||||||||||| |||||||||||||
Sbjct: 112293 tgtcagattctgtctatacaagagca 112318
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>emb|AL034395.6|HS243L18 Human DNA sequence from clone RP1-243L18 on chromosome 1p36.11-36.23
             Contains the 5' end of a novel gene (KIAA1026) and a CpG
             island, complete sequence
          Length = 110654

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 425   tctcacaactttgcaggaaag 445
             |||||||||||||||||||||
Sbjct: 16602 tctcacaactttgcaggaaag 16622
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>emb|AL391147.1|ATF5E19 Arabidopsis thaliana DNA chromosome 5, BAC clone F5E19 (ESSA project)
          Length = 77976

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 154   gagtgcattgctacatatgacaagcacga 182
             ||||||||||| ||||||||| |||||||
Sbjct: 39884 gagtgcattgccacatatgaccagcacga 39856
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>gb|AC121149.12| Mus musculus chromosome 3, clone RP24-383A4, complete sequence
          Length = 172369

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 306  gaaggaggaggaagttttaa 325
            ||||||||||||||||||||
Sbjct: 6070 gaaggaggaggaagttttaa 6089
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>ref|XM_723741.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY07854)
           partial mRNA
          Length = 150

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tggcaagaaaactgaaattc 226
           ||||||||||||||||||||
Sbjct: 62  tggcaagaaaactgaaattc 81
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>ref|XM_674436.1| Plasmodium berghei strain ANKA Pb-fam-2 protein (PB402916.00.0)
            partial mRNA
          Length = 7009

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  tggcaagaaaactgaaattc 226
            ||||||||||||||||||||
Sbjct: 4002 tggcaagaaaactgaaattc 3983
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>gb|AC148304.3| Medicago truncatula clone mth2-21b19, complete sequence
          Length = 110520

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 279   ggaagataagcaggaggatt 298
             ||||||||||||||||||||
Sbjct: 62328 ggaagataagcaggaggatt 62309
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>gb|AC155807.3| Mus musculus BAC clone RP24-303N21 from chromosome 8, complete sequence
          Length = 167996

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 305   agaaggaggaggaagtttta 324
             ||||||||||||||||||||
Sbjct: 93130 agaaggaggaggaagtttta 93149
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>emb|AJ400871.1|SJA400871 Scomber japonicus mRNA for endoplasmic reticulum lumenal L-amino
           acid oxidase (lao gene)
          Length = 2025

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 212 agaaaactgaaattcttgct 231
           ||||||||||||||||||||
Sbjct: 1   agaaaactgaaattcttgct 20
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>gb|AC087378.6| Homo sapiens chromosome 11, clone RP11-375L11, complete sequence
          Length = 166379

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   cccttgttggtctcccaaag 492
             ||||||||||||||||||||
Sbjct: 89499 cccttgttggtctcccaaag 89518
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>gb|AC106763.2| Homo sapiens chromosome 5 clone RP11-21C10, complete sequence
          Length = 165902

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    ccttaagaaggaggaggaag 319
              ||||||||||||||||||||
Sbjct: 121330 ccttaagaaggaggaggaag 121311
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>gb|AC009379.7| Drosophila melanogaster 3L BAC RP98-48M6 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 175963

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 306   gaaggaggaggaagttttaagaggccag 333
             |||||||||||||||| | |||||||||
Sbjct: 14026 gaaggaggaggaagttgtgagaggccag 13999
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>gb|AC009378.7| Drosophila melanogaster 3L BAC RP98-9E8 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 180387

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 306   gaaggaggaggaagttttaagaggccag 333
             |||||||||||||||| | |||||||||
Sbjct: 96263 gaaggaggaggaagttgtgagaggccag 96290
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>gb|AC104947.3| Homo sapiens chromosome 11, clone RP11-1029L14, complete sequence
          Length = 186823

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 473   cccttgttggtctcccaaag 492
             ||||||||||||||||||||
Sbjct: 32428 cccttgttggtctcccaaag 32409
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>gb|AC011433.5| Homo sapiens chromosome 5 clone P1_988H11, complete sequence
          Length = 75454

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 300   ccttaagaaggaggaggaag 319
             ||||||||||||||||||||
Sbjct: 26525 ccttaagaaggaggaggaag 26544
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>gb|AC090423.11| Homo sapiens Xp BAC RP11-86G5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 104901

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 214    aaaactgaaattcttgctac 233
              ||||||||||||||||||||
Sbjct: 100054 aaaactgaaattcttgctac 100035
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>gb|AC093827.3| Homo sapiens BAC clone RP11-397E7 from 4, complete sequence
          Length = 192263

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    gtggaactcagtttgtttct 108
             ||||||||||||||||||||
Sbjct: 29133 gtggaactcagtttgtttct 29114
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>gb|AC164078.4| Mus musculus chromosome 3, clone RP23-123C15, complete sequence
          Length = 188095

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 306    gaaggaggaggaagttttaa 325
              ||||||||||||||||||||
Sbjct: 161541 gaaggaggaggaagttttaa 161522
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>gb|AC093608.3| Homo sapiens BAC clone RP11-700C8 from 4, complete sequence
          Length = 162015

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 352  tcagattctgactatacaag 371
            ||||||||||||||||||||
Sbjct: 7870 tcagattctgactatacaag 7851
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>gb|AC147620.5| Mus musculus BAC clone RP24-285H21 from chromosome 13, complete
             sequence
          Length = 172051

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   gaagataagcaggaggattt 299
             ||||||||||||||||||||
Sbjct: 80438 gaagataagcaggaggattt 80457
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>gb|AC158611.7| Mus musculus 10 BAC RP23-29D19 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 214923

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 451    ccagaggaccctatagaaaa 470
              ||||||||||||||||||||
Sbjct: 116895 ccagaggaccctatagaaaa 116876
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>gb|AF151801.1|AF151801 Homo sapiens CGI-43 protein mRNA, complete cds
          Length = 2457

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 89  gtggaactcagtttgtttct 108
           ||||||||||||||||||||
Sbjct: 61  gtggaactcagtttgtttct 42
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>gb|AE003518.3| Drosophila melanogaster chromosome 3L, section 67 of 83 of the complete
              sequence
          Length = 279088

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 306    gaaggaggaggaagttttaagaggccag 333
              |||||||||||||||| | |||||||||
Sbjct: 275743 gaaggaggaggaagttgtgagaggccag 275770
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>emb|AL929199.11| Mouse DNA sequence from clone RP23-458A10 on chromosome 2, complete
             sequence
          Length = 95855

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   aagaaggaggaggaagtttt 323
             ||||||||||||||||||||
Sbjct: 52488 aagaaggaggaggaagtttt 52469
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>emb|AJ403344.1|MMU403344 M.musculus DNA for desmin-binding fragment DesB47
          Length = 331

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tggcaagaaaactgaaattc 226
           ||||||||||||||||||||
Sbjct: 115 tggcaagaaaactgaaattc 134
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>emb|AJ403309.1|MMU403309 M.musculus DNA for desmin-binding fragment DesB12
          Length = 407

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tggcaagaaaactgaaattc 226
           ||||||||||||||||||||
Sbjct: 69  tggcaagaaaactgaaattc 88
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>emb|AJ403143.1|MMU403143 M.musculus DNA for vimentin-binding fragment VimC8
          Length = 304

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tggcaagaaaactgaaattc 226
           ||||||||||||||||||||
Sbjct: 188 tggcaagaaaactgaaattc 207
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>emb|AL732459.5| Mouse DNA sequence from clone RP23-115J4 on chromosome X, complete
              sequence
          Length = 201897

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 211    aagaaaactgaaattcttgc 230
              ||||||||||||||||||||
Sbjct: 148079 aagaaaactgaaattcttgc 148098
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>gb|M32554.1|MUSGSAT9D Mouse gamma-satellite DNA, clone 9D
          Length = 231

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 207 tggcaagaaaactgaaattc 226
           ||||||||||||||||||||
Sbjct: 63  tggcaagaaaactgaaattc 82


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,344,547
Number of Sequences: 3902068
Number of extensions: 5344547
Number of successful extensions: 135310
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135178
Number of HSP's gapped (non-prelim): 129
length of query: 492
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 470
effective length of database: 17,147,199,772
effective search space: 8059183892840
effective search space used: 8059183892840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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